RNA–Protein interactions for RNA: ENST00000565173.1

CAPN3-213, Transcript of calpain 3, humanhuman

TSL 4

Gene CAPN3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-213ENST00000565173 WAPLQ7Z5K2 1190 aa12.81□□□□□ -0.36
CAPN3-213ENST00000565173 IFT172Q9UG01 1749 aa12.81□□□□□ -0.36
CAPN3-213ENST00000565173 LRPPRCP42704 1394 aaKnown RBP12.81□□□□□ -0.36
CAPN3-213ENST00000565173 ABCC11Q96J66 1382 aa12.81□□□□□ -0.36
CAPN3-213ENST00000565173 PIK3C2GO75747 1445 aa12.8□□□□□ -0.36
CAPN3-213ENST00000565173 CDK12Q9NYV4 1490 aaPredicted RBP12.8□□□□□ -0.36
CAPN3-213ENST00000565173 ADAMTS2O95450 1211 aa12.8□□□□□ -0.36
CAPN3-213ENST00000565173 QTRT2Q9H974 415 aaKnown RBP12.8□□□□□ -0.36
CAPN3-213ENST00000565173 STK26Q9P289 416 aa12.8□□□□□ -0.36
CAPN3-213ENST00000565173 CDC42BPGQ6DT37 1551 aa12.79□□□□□ -0.36
CAPN3-213ENST00000565173 PLEKHH1Q9ULM0 1364 aa12.79□□□□□ -0.36
CAPN3-213ENST00000565173 ESCO1Q5FWF5 840 aa12.78□□□□□ -0.36
CAPN3-213ENST00000565173 NGLY1Q96IV0 654 aa12.78□□□□□ -0.36
CAPN3-213ENST00000565173 FOXO3O43524 673 aa12.77□□□□□ -0.37
CAPN3-213ENST00000565173 RBM6P78332 1123 aaKnown RBP12.77□□□□□ -0.37
CAPN3-213ENST00000565173 FNBP4Q8N3X1 1017 aaPredicted RBP12.77□□□□□ -0.37
CAPN3-213ENST00000565173 C14orf93Q9H972 538 aaKnown RBP12.77□□□□□ -0.37
CAPN3-213ENST00000565173 NPHP3Q7Z494 1330 aa12.77□□□□□ -0.37
CAPN3-213ENST00000565173 ACIN1Q9UKV3 1341 aaKnown RBP12.77□□□□□ -0.37
CAPN3-213ENST00000565173 PXDNQ92626 1479 aa12.77□□□□□ -0.37
CAPN3-213ENST00000565173 SIRT1Q96EB6 747 aa12.76□□□□□ -0.37
CAPN3-213ENST00000565173 YTHDC2Q9H6S0 1430 aaKnown RBP12.76□□□□□ -0.37
CAPN3-213ENST00000565173 NRXN1Q9ULB1 1477 aa12.76□□□□□ -0.37
CAPN3-213ENST00000565173 COL22A1Q8NFW1 1626 aaPredicted RBP12.76□□□□□ -0.37
CAPN3-213ENST00000565173 NUTM2FA1L443 756 aa12.75□□□□□ -0.37
CAPN3-213ENST00000565173 RGS12O14924 1447 aa12.75□□□□□ -0.37
CAPN3-213ENST00000565173 XPCQ01831 940 aaPredicted RBP12.75□□□□□ -0.37
CAPN3-213ENST00000565173 KNDC1Q76NI1 1749 aa12.75□□□□□ -0.37
CAPN3-213ENST00000565173 MYOM2P54296 1465 aa12.74□□□□□ -0.37
CAPN3-213ENST00000565173 RAB3GAP2Q9H2M9 1393 aa12.74□□□□□ -0.37
CAPN3-213ENST00000565173 CFAP70Q5T0N1 1121 aa12.74□□□□□ -0.37
CAPN3-213ENST00000565173 USP21Q9UK80 565 aa12.74□□□□□ -0.37
CAPN3-213ENST00000565173 EP400Q96L91 3159 aa12.74□□□□□ -0.37
CAPN3-213ENST00000565173 SRCAPQ6ZRS2 3230 aa12.73□□□□□ -0.37
CAPN3-213ENST00000565173 FMN2Q9NZ56 1722 aa12.71□□□□□ -0.37
CAPN3-213ENST00000565173 TRPC5Q9UL62 973 aaPredicted RBP12.71□□□□□ -0.37
CAPN3-213ENST00000565173 BCL9LQ86UU0 1499 aa12.71□□□□□ -0.38
CAPN3-213ENST00000565173 ATRNO75882 1429 aa12.71□□□□□ -0.38
CAPN3-213ENST00000565173 DHX57Q6P158 1386 aaKnown RBP12.7□□□□□ -0.38
CAPN3-213ENST00000565173 SPATA31A3Q5VYP0 1347 aa12.7□□□□□ -0.38
CAPN3-213ENST00000565173 KRT28Q7Z3Y7 464 aa12.69□□□□□ -0.38
CAPN3-213ENST00000565173 PRAM1Q96QH2 718 aa12.69□□□□□ -0.38
CAPN3-213ENST00000565173 RGPD8O14715 1765 aaPredicted RBP12.67□□□□□ -0.38
CAPN3-213ENST00000565173 SAFB2Q14151 953 aaKnown RBP eCLIP12.67□□□□□ -0.38
CAPN3-213ENST00000565173 PHF8Q9UPP1 1060 aa12.67□□□□□ -0.38
CAPN3-213ENST00000565173 ADGRB1O14514 1584 aa12.67□□□□□ -0.38
CAPN3-213ENST00000565173 MARF1Q9Y4F3 1742 aaKnown RBP12.67□□□□□ -0.38
CAPN3-213ENST00000565173 DLC1Q96QB1 1528 aa12.67□□□□□ -0.38
CAPN3-213ENST00000565173 KIF1AQ12756 1690 aa12.67□□□□□ -0.38
CAPN3-213ENST00000565173 HRCP23327 699 aa12.66□□□□□ -0.38
CAPN3-213ENST00000565173 GJD4Q96KN9 370 aaPredicted RBP12.65□□□□□ -0.38
CAPN3-213ENST00000565173 SLIT2O94813 1529 aa12.65□□□□□ -0.38
CAPN3-213ENST00000565173 PSME1Q06323 249 aa12.64□□□□□ -0.39
CAPN3-213ENST00000565173 UNC5CLQ8IV45 518 aa12.64□□□□□ -0.39
CAPN3-213ENST00000565173 DCAF11Q8TEB1 546 aa12.64□□□□□ -0.39
CAPN3-213ENST00000565173 POGKQ9P215 609 aa12.64□□□□□ -0.39
CAPN3-213ENST00000565173 TRAK1Q9UPV9 953 aa12.64□□□□□ -0.39
CAPN3-213ENST00000565173 SBNO1A3KN83 1393 aa12.64□□□□□ -0.39
CAPN3-213ENST00000565173 ATAD2Q6PL18 1390 aa12.64□□□□□ -0.39
CAPN3-213ENST00000565173 TNS3Q68CZ2 1445 aa12.63□□□□□ -0.39
CAPN3-213ENST00000565173 USP32Q8NFA0 1604 aa12.63□□□□□ -0.39
CAPN3-213ENST00000565173 CABLES1Q8TDN4 633 aa12.63□□□□□ -0.39
CAPN3-213ENST00000565173 KDM2AQ9Y2K7 1162 aa12.63□□□□□ -0.39
CAPN3-213ENST00000565173 ADGRB2O60241 1585 aa12.62□□□□□ -0.39
CAPN3-213ENST00000565173 PMFBP1Q8TBY8 1022 aa12.62□□□□□ -0.39
CAPN3-213ENST00000565173 STAC3Q96MF2 364 aa12.62□□□□□ -0.39
CAPN3-213ENST00000565173 HIRIP3Q9BW71 556 aaPredicted RBP12.62□□□□□ -0.39
CAPN3-213ENST00000565173 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.62□□□□□ -0.39
CAPN3-213ENST00000565173 ANKARQ7Z5J8 1434 aa12.62□□□□□ -0.39
CAPN3-213ENST00000565173 PRR36Q9H6K5 1346 aa12.61□□□□□ -0.39
CAPN3-213ENST00000565173 GLI3P10071 1580 aa12.6□□□□□ -0.39
CAPN3-213ENST00000565173 RALGAPBQ86X10 1494 aa12.6□□□□□ -0.39
CAPN3-213ENST00000565173 MINK1Q8N4C8 1332 aaPredicted RBP12.6□□□□□ -0.39
CAPN3-213ENST00000565173 ARHGEF10O15013 1369 aa12.59□□□□□ -0.39
CAPN3-213ENST00000565173 WASLO00401 505 aaPredicted RBP12.59□□□□□ -0.39
CAPN3-213ENST00000565173 FAM83GA6ND36 823 aa12.58□□□□□ -0.4
CAPN3-213ENST00000565173 ONECUT3O60422 494 aaPredicted RBP12.58□□□□□ -0.4
CAPN3-213ENST00000565173 VPS72Q15906 364 aa12.58□□□□□ -0.4
CAPN3-213ENST00000565173 LMOD2Q6P5Q4 547 aa12.58□□□□□ -0.4
CAPN3-213ENST00000565173 CCDC125Q86Z20 511 aa12.58□□□□□ -0.4
CAPN3-213ENST00000565173 ABCA3Q99758 1704 aa12.57□□□□□ -0.4
CAPN3-213ENST00000565173 TRPM3Q9HCF6 1732 aaPredicted RBP12.57□□□□□ -0.4
CAPN3-213ENST00000565173 PLEKHG5O94827 1062 aa12.57□□□□□ -0.4
CAPN3-213ENST00000565173 HAP1P54257 671 aaPredicted RBP12.57□□□□□ -0.4
CAPN3-213ENST00000565173 TULP4Q9NRJ4 1543 aa12.56□□□□□ -0.4
CAPN3-213ENST00000565173 ALS2Q96Q42 1657 aa12.55□□□□□ -0.4
CAPN3-213ENST00000565173 SEPT12Q8IYM1 358 aa12.55□□□□□ -0.4
CAPN3-213ENST00000565173 EIF3AQ14152 1382 aaKnown RBP12.55□□□□□ -0.4
CAPN3-213ENST00000565173 GPRASP1Q5JY77 1395 aa12.55□□□□□ -0.4
CAPN3-213ENST00000565173 PLCH1Q4KWH8 1693 aa12.54□□□□□ -0.4
CAPN3-213ENST00000565173 NWD2Q9ULI1 1742 aa12.54□□□□□ -0.4
CAPN3-213ENST00000565173 ARHGEF28Q8N1W1 1705 aaKnown RBP12.54□□□□□ -0.4
CAPN3-213ENST00000565173 BRWD3Q6RI45 1802 aa12.53□□□□□ -0.4
CAPN3-213ENST00000565173 NGDNQ8NEJ9 315 aaKnown RBP12.53□□□□□ -0.4
CAPN3-213ENST00000565173 NUDT16Q96DE0 195 aaKnown RBP12.53□□□□□ -0.4
CAPN3-213ENST00000565173 ATP7BP35670 1465 aa12.53□□□□□ -0.4
CAPN3-213ENST00000565173 NBPF1Q3BBV0 1214 aa12.52□□□□□ -0.41
CAPN3-213ENST00000565173 CDK19Q9BWU1 502 aa12.52□□□□□ -0.41
CAPN3-213ENST00000565173 BTG4Q9NY30 223 aa12.52□□□□□ -0.41
CAPN3-213ENST00000565173 BLMP54132 1417 aaPredicted RBP12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms