RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 MARF1Q9Y4F3 1742 aaKnown RBP11.19□□□□□ -0.62
VPS4A-203ENST00000564399 XPCQ01831 940 aaPredicted RBP11.19□□□□□ -0.62
VPS4A-203ENST00000564399 SF3B2Q13435 895 aaKnown RBP11.19□□□□□ -0.62
VPS4A-203ENST00000564399 COL22A1Q8NFW1 1626 aaPredicted RBP11.19□□□□□ -0.62
VPS4A-203ENST00000564399 VGFO15240 615 aaPredicted RBP11.18□□□□□ -0.62
VPS4A-203ENST00000564399 FOXO3O43524 673 aa11.18□□□□□ -0.62
VPS4A-203ENST00000564399 EP400Q96L91 3159 aa11.18□□□□□ -0.62
VPS4A-203ENST00000564399 MYOM2P54296 1465 aa11.18□□□□□ -0.62
VPS4A-203ENST00000564399 CLTCL1P53675 1640 aa11.17□□□□□ -0.62
VPS4A-203ENST00000564399 DEFB132Q7Z7B7 95 aa11.17□□□□□ -0.62
VPS4A-203ENST00000564399 BLMP54132 1417 aaPredicted RBP11.17□□□□□ -0.62
VPS4A-203ENST00000564399 HFM1A2PYH4 1435 aa11.16□□□□□ -0.62
VPS4A-203ENST00000564399 BRWD3Q6RI45 1802 aa11.15□□□□□ -0.62
VPS4A-203ENST00000564399 NUTM2FA1L443 756 aa11.15□□□□□ -0.62
VPS4A-203ENST00000564399 UNC5CLQ8IV45 518 aa11.15□□□□□ -0.62
VPS4A-203ENST00000564399 LRPPRCP42704 1394 aaKnown RBP11.15□□□□□ -0.63
VPS4A-203ENST00000564399 PXDNQ92626 1479 aa11.14□□□□□ -0.63
VPS4A-203ENST00000564399 HAP1P54257 671 aaPredicted RBP11.14□□□□□ -0.63
VPS4A-203ENST00000564399 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.14□□□□□ -0.63
VPS4A-203ENST00000564399 RALGAPBQ86X10 1494 aa11.13□□□□□ -0.63
VPS4A-203ENST00000564399 SEPT12Q8IYM1 358 aa11.13□□□□□ -0.63
VPS4A-203ENST00000564399 CCDC9Q9Y3X0 531 aaKnown RBP11.13□□□□□ -0.63
VPS4A-203ENST00000564399 GLI3P10071 1580 aa11.12□□□□□ -0.63
VPS4A-203ENST00000564399 PLEKHG5O94827 1062 aa11.12□□□□□ -0.63
VPS4A-203ENST00000564399 CDC42BPGQ6DT37 1551 aa11.11□□□□□ -0.63
VPS4A-203ENST00000564399 RPGRIP1LQ68CZ1 1315 aa11.11□□□□□ -0.63
VPS4A-203ENST00000564399 PSDA5PKW4 1024 aaPredicted RBP11.11□□□□□ -0.63
VPS4A-203ENST00000564399 STK26Q9P289 416 aa11.11□□□□□ -0.63
VPS4A-203ENST00000564399 NAIPQ13075 1403 aa11.1□□□□□ -0.63
VPS4A-203ENST00000564399 PRAG1Q86YV5 1406 aa11.1□□□□□ -0.63
VPS4A-203ENST00000564399 SLIT2O94813 1529 aa11.1□□□□□ -0.63
VPS4A-203ENST00000564399 LRP5O75197 1615 aa11.1□□□□□ -0.63
VPS4A-203ENST00000564399 A0A0G2JS52 829 aa11.1□□□□□ -0.63
VPS4A-203ENST00000564399 MYT1Q01538 1121 aa11.1□□□□□ -0.63
VPS4A-203ENST00000564399 KRT27Q7Z3Y8 459 aa11.1□□□□□ -0.63
VPS4A-203ENST00000564399 PPLO60437 1756 aa11.1□□□□□ -0.63
VPS4A-203ENST00000564399 SPATA31A3Q5VYP0 1347 aa11.09□□□□□ -0.63
VPS4A-203ENST00000564399 BAG6P46379 1132 aa11.09□□□□□ -0.63
VPS4A-203ENST00000564399 KRT28Q7Z3Y7 464 aa11.09□□□□□ -0.63
VPS4A-203ENST00000564399 WAPLQ7Z5K2 1190 aa11.09□□□□□ -0.63
VPS4A-203ENST00000564399 PPARGC1BQ86YN6 1023 aaKnown RBP11.09□□□□□ -0.63
VPS4A-203ENST00000564399 VPS72Q15906 364 aa11.08□□□□□ -0.64
VPS4A-203ENST00000564399 LMOD2Q6P5Q4 547 aa11.08□□□□□ -0.64
VPS4A-203ENST00000564399 USP32Q8NFA0 1604 aa11.08□□□□□ -0.64
VPS4A-203ENST00000564399 HRCP23327 699 aa11.07□□□□□ -0.64
VPS4A-203ENST00000564399 CABLES1Q8TDN4 633 aa11.07□□□□□ -0.64
VPS4A-203ENST00000564399 CCDC144AA2RUR9 1427 aa11.07□□□□□ -0.64
VPS4A-203ENST00000564399 PSME1Q06323 249 aa11.06□□□□□ -0.64
VPS4A-203ENST00000564399 KIF1AQ12756 1690 aa11.05□□□□□ -0.64
VPS4A-203ENST00000564399 ONECUT3O60422 494 aaPredicted RBP11.05□□□□□ -0.64
VPS4A-203ENST00000564399 TMEM132EQ6IEE7 984 aa11.05□□□□□ -0.64
VPS4A-203ENST00000564399 SLC4A1APQ9BWU0 796 aaKnown RBP11.05□□□□□ -0.64
VPS4A-203ENST00000564399 NWD2Q9ULI1 1742 aa11.05□□□□□ -0.64
VPS4A-203ENST00000564399 RGPD8O14715 1765 aaPredicted RBP11.05□□□□□ -0.64
VPS4A-203ENST00000564399 ADGRF5Q8IZF2 1346 aa11.05□□□□□ -0.64
VPS4A-203ENST00000564399 PLCH1Q4KWH8 1693 aa11.04□□□□□ -0.64
VPS4A-203ENST00000564399 PLEKHH1Q9ULM0 1364 aa11.04□□□□□ -0.64
VPS4A-203ENST00000564399 FMN2Q9NZ56 1722 aa11.04□□□□□ -0.64
VPS4A-203ENST00000564399 TNS3Q68CZ2 1445 aa11.04□□□□□ -0.64
VPS4A-203ENST00000564399 EN1Q05925 392 aaPredicted RBP11.04□□□□□ -0.64
VPS4A-203ENST00000564399 RGL3Q3MIN7 710 aa11.04□□□□□ -0.64
VPS4A-203ENST00000564399 PHF8Q9UPP1 1060 aa11.04□□□□□ -0.64
VPS4A-203ENST00000564399 R3HDM1Q15032 1099 aaKnown RBP11.03□□□□□ -0.64
VPS4A-203ENST00000564399 FAM98CQ17RN3 349 aaKnown RBP11.03□□□□□ -0.64
VPS4A-203ENST00000564399 ABCC11Q96J66 1382 aa11.03□□□□□ -0.64
VPS4A-203ENST00000564399 TECPR2O15040 1411 aa11.02□□□□□ -0.64
VPS4A-203ENST00000564399 RRBP1Q9P2E9 1410 aaKnown RBP11.02□□□□□ -0.64
VPS4A-203ENST00000564399 FAM83GA6ND36 823 aa11.02□□□□□ -0.65
VPS4A-203ENST00000564399 FAM182BQ5T319 152 aa11.01□□□□□ -0.65
VPS4A-203ENST00000564399 ARHGEF10O15013 1369 aa11.01□□□□□ -0.65
VPS4A-203ENST00000564399 KNDC1Q76NI1 1749 aa11.01□□□□□ -0.65
VPS4A-203ENST00000564399 BTG4Q9NY30 223 aa11□□□□□ -0.65
VPS4A-203ENST00000564399 RGPD1P0DJD0 1748 aa11□□□□□ -0.65
VPS4A-203ENST00000564399 IFT172Q9UG01 1749 aa11□□□□□ -0.65
VPS4A-203ENST00000564399 SBNO1A3KN83 1393 aa11□□□□□ -0.65
VPS4A-203ENST00000564399 ANKRD30BQ9BXX2 1392 aa11□□□□□ -0.65
VPS4A-203ENST00000564399 ABCA3Q99758 1704 aa10.99□□□□□ -0.65
VPS4A-203ENST00000564399 SAFB2Q14151 953 aaKnown RBP eCLIP10.99□□□□□ -0.65
VPS4A-203ENST00000564399 PMFBP1Q8TBY8 1022 aa10.99□□□□□ -0.65
VPS4A-203ENST00000564399 YTHDC2Q9H6S0 1430 aaKnown RBP10.99□□□□□ -0.65
VPS4A-203ENST00000564399 YY1P25490 414 aa10.97□□□□□ -0.65
VPS4A-203ENST00000564399 EZH2Q15910 746 aaKnown RBP10.97□□□□□ -0.65
VPS4A-203ENST00000564399 SIRT1Q96EB6 747 aa10.97□□□□□ -0.65
VPS4A-203ENST00000564399 NRXN1Q9ULB1 1477 aa10.97□□□□□ -0.65
VPS4A-203ENST00000564399 NRAPQ86VF7 1730 aa10.96□□□□□ -0.65
VPS4A-203ENST00000564399 COL14A1Q05707 1796 aaKnown RBP10.95□□□□□ -0.66
VPS4A-203ENST00000564399 PIK3C2GO75747 1445 aa10.95□□□□□ -0.66
VPS4A-203ENST00000564399 DHX57Q6P158 1386 aaKnown RBP10.95□□□□□ -0.66
VPS4A-203ENST00000564399 SPATA31A5Q5VU36 1347 aa10.95□□□□□ -0.66
VPS4A-203ENST00000564399 SPATA31A7Q8IWB4 1347 aa10.95□□□□□ -0.66
VPS4A-203ENST00000564399 TRIM37O94972 964 aa10.95□□□□□ -0.66
VPS4A-203ENST00000564399 PRAM1Q96QH2 718 aa10.95□□□□□ -0.66
VPS4A-203ENST00000564399 POGKQ9P215 609 aa10.95□□□□□ -0.66
VPS4A-203ENST00000564399 SPATA31E1Q6ZUB1 1445 aa10.94□□□□□ -0.66
VPS4A-203ENST00000564399 GPRASP1Q5JY77 1395 aa10.94□□□□□ -0.66
VPS4A-203ENST00000564399 C14orf93Q9H972 538 aaKnown RBP10.94□□□□□ -0.66
VPS4A-203ENST00000564399 TNS1Q9HBL0 1735 aaKnown RBP10.94□□□□□ -0.66
VPS4A-203ENST00000564399 DISP2A7MBM2 1401 aa10.93□□□□□ -0.66
VPS4A-203ENST00000564399 PAK3O75914 559 aaPredicted RBP10.93□□□□□ -0.66
VPS4A-203ENST00000564399 APBA3O96018 575 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms