RNA–Protein interactions for RNA: ENST00000564255.5

CHD9-209, Transcript of chromodomain helicase DNA binding protein 9, human

TSL 5

Gene CHD9, Length 2,896 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD9-209	ENST00000564255	LAPTM4B	Q86VI4	370 aa		4.65	□□□□□ -1.66
CHD9-209	ENST00000564255	FAM98C	Q17RN3	349 aa	Known RBP	4.65	□□□□□ -1.67
CHD9-209	ENST00000564255	SLF2	Q8IX21	1173 aa		4.65	□□□□□ -1.67
CHD9-209	ENST00000564255	SRPK2	P78362	688 aa	Known RBP	4.64	□□□□□ -1.67
CHD9-209	ENST00000564255	GRIPAP1	Q4V328	841 aa		4.64	□□□□□ -1.67
CHD9-209	ENST00000564255	PDE4C	Q08493	712 aa		4.64	□□□□□ -1.67
CHD9-209	ENST00000564255	HDGFL1	Q5TGJ6	251 aa		4.64	□□□□□ -1.67
CHD9-209	ENST00000564255	HELB	Q8NG08	1087 aa	Predicted RBP	4.64	□□□□□ -1.67
CHD9-209	ENST00000564255	LRRN4	Q8WUT4	740 aa		4.64	□□□□□ -1.67
CHD9-209	ENST00000564255	ALG2	Q9H553	416 aa		4.64	□□□□□ -1.67
CHD9-209	ENST00000564255	VPS9D1	Q9Y2B5	631 aa		4.64	□□□□□ -1.67
CHD9-209	ENST00000564255	BHMG1	C9JSJ3	638 aa	Predicted RBP	4.63	□□□□□ -1.67
CHD9-209	ENST00000564255	PBX2	P40425	430 aa		4.63	□□□□□ -1.67
CHD9-209	ENST00000564255	CFAP70	Q5T0N1	1121 aa		4.63	□□□□□ -1.67
CHD9-209	ENST00000564255	CFH	P08603	1231 aa		4.63	□□□□□ -1.67
CHD9-209	ENST00000564255	SEPT9	Q9UHD8	586 aa	Predicted RBP	4.63	□□□□□ -1.67
CHD9-209	ENST00000564255	ATP6V1A	P38606	617 aa		4.63	□□□□□ -1.67
CHD9-209	ENST00000564255	SLC4A3	P48751	1232 aa		4.63	□□□□□ -1.67
CHD9-209	ENST00000564255	HDGF	P51858	240 aa	Known RBP	4.63	□□□□□ -1.67
CHD9-209	ENST00000564255	FUT2	Q10981	343 aa		4.63	□□□□□ -1.67
CHD9-209	ENST00000564255	PBXIP1	Q96AQ6	731 aa		4.63	□□□□□ -1.67
CHD9-209	ENST00000564255	CCDC9	Q9Y3X0	531 aa	Known RBP	4.63	□□□□□ -1.67
CHD9-209	ENST00000564255	ACIN1	Q9UKV3	1341 aa	Known RBP	4.62	□□□□□ -1.67
CHD9-209	ENST00000564255	SAMD7	Q7Z3H4	446 aa		4.62	□□□□□ -1.67
CHD9-209	ENST00000564255	VAC14	Q08AM6	782 aa		4.62	□□□□□ -1.67
CHD9-209	ENST00000564255	EPS8L1	Q8TE68	723 aa		4.62	□□□□□ -1.67
CHD9-209	ENST00000564255	ERBB3	P21860	1342 aa		4.61	□□□□□ -1.67
CHD9-209	ENST00000564255	C6orf229	H3BNL8	230 aa		4.61	□□□□□ -1.67
CHD9-209	ENST00000564255	SOX11	P35716	441 aa		4.61	□□□□□ -1.67
CHD9-209	ENST00000564255	VARS2	Q5ST30	1063 aa	Known RBP	4.61	□□□□□ -1.67
CHD9-209	ENST00000564255	PRR7	Q8TB68	274 aa		4.61	□□□□□ -1.67
CHD9-209	ENST00000564255	ACTN4	O43707	911 aa	Known RBP	4.61	□□□□□ -1.67
CHD9-209	ENST00000564255	KMT5B	Q4FZB7	885 aa		4.61	□□□□□ -1.67
CHD9-209	ENST00000564255	MORN1	Q5T089	497 aa		4.61	□□□□□ -1.67
CHD9-209	ENST00000564255	DESI1	Q6ICB0	168 aa		4.61	□□□□□ -1.67
CHD9-209	ENST00000564255	ZNF687	Q8N1G0	1237 aa		4.61	□□□□□ -1.67
CHD9-209	ENST00000564255	PPP1R12C	Q9BZL4	782 aa		4.61	□□□□□ -1.67
CHD9-209	ENST00000564255	TK2	O00142	265 aa		4.6	□□□□□ -1.67
CHD9-209	ENST00000564255	RETREG3	Q86VR2	466 aa		4.6	□□□□□ -1.67
CHD9-209	ENST00000564255	UST	Q9Y2C2	406 aa		4.6	□□□□□ -1.67
CHD9-209	ENST00000564255	NR6A1	Q15406	480 aa		4.6	□□□□□ -1.67
CHD9-209	ENST00000564255	NPM2	Q86SE8	214 aa	Known RBP	4.6	□□□□□ -1.67
CHD9-209	ENST00000564255	SYMPK	Q92797	1274 aa	Known RBP	4.6	□□□□□ -1.67
CHD9-209	ENST00000564255	UCN2	Q96RP3	112 aa		4.59	□□□□□ -1.67
CHD9-209	ENST00000564255	AXIN2	Q9Y2T1	843 aa		4.59	□□□□□ -1.67
CHD9-209	ENST00000564255		Q3C1V9	767 aa		4.59	□□□□□ -1.67
CHD9-209	ENST00000564255	LYPD8	Q6UX82	237 aa		4.59	□□□□□ -1.67
CHD9-209	ENST00000564255	MARVELD3	Q96A59	401 aa		4.59	□□□□□ -1.67
CHD9-209	ENST00000564255	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	4.59	□□□□□ -1.68
CHD9-209	ENST00000564255	PALM3	A6NDB9	673 aa	Predicted RBP	4.59	□□□□□ -1.68
CHD9-209	ENST00000564255	PER1	O15534	1290 aa	Predicted RBP	4.59	□□□□□ -1.68
CHD9-209	ENST00000564255	AEBP1	Q8IUX7	1158 aa		4.59	□□□□□ -1.68
CHD9-209	ENST00000564255	TSC1	Q92574	1164 aa		4.59	□□□□□ -1.68
CHD9-209	ENST00000564255	FAM163A	Q96GL9	167 aa	Predicted RBP	4.59	□□□□□ -1.68
CHD9-209	ENST00000564255	ZFR	Q96KR1	1074 aa	Known RBP	4.59	□□□□□ -1.68
CHD9-209	ENST00000564255	NBPF3	Q9H094	633 aa		4.59	□□□□□ -1.68
CHD9-209	ENST00000564255	PATL2	C9JE40	543 aa	Known RBP	4.58	□□□□□ -1.68
CHD9-209	ENST00000564255	ST18	O60284	1047 aa		4.58	□□□□□ -1.68
CHD9-209	ENST00000564255	RANGAP1	P46060	587 aa	Predicted RBP	4.58	□□□□□ -1.68
CHD9-209	ENST00000564255	KCNA1	Q09470	495 aa		4.58	□□□□□ -1.68
CHD9-209	ENST00000564255	SLC27A5	Q9Y2P5	690 aa		4.58	□□□□□ -1.68
CHD9-209	ENST00000564255	SALL2	Q9Y467	1007 aa	Predicted RBP	4.58	□□□□□ -1.68
CHD9-209	ENST00000564255	ATG7	O95352	703 aa		4.57	□□□□□ -1.68
CHD9-209	ENST00000564255	NR1H3	Q13133	447 aa		4.57	□□□□□ -1.68
CHD9-209	ENST00000564255	PNMA1	Q8ND90	353 aa		4.57	□□□□□ -1.68
CHD9-209	ENST00000564255	PRR14	Q9BWN1	585 aa		4.57	□□□□□ -1.68
CHD9-209	ENST00000564255	TFIP11	Q9UBB9	837 aa	Known RBP	4.57	□□□□□ -1.68
CHD9-209	ENST00000564255	BRD1	O95696	1058 aa		4.56	□□□□□ -1.68
CHD9-209	ENST00000564255	F12	P00748	615 aa	Predicted RBP	4.56	□□□□□ -1.68
CHD9-209	ENST00000564255	CSB-PGBD3	P0DP91	1061 aa		4.56	□□□□□ -1.68
CHD9-209	ENST00000564255	RFX1	P22670	979 aa		4.56	□□□□□ -1.68
CHD9-209	ENST00000564255	EMP3	P54852	163 aa		4.56	□□□□□ -1.68
CHD9-209	ENST00000564255	SEMA3F	Q13275	785 aa		4.56	□□□□□ -1.68
CHD9-209	ENST00000564255	BRICD5	Q6PL45	260 aa		4.56	□□□□□ -1.68
CHD9-209	ENST00000564255	ZC3H4	Q9UPT8	1303 aa	Known RBP	4.56	□□□□□ -1.68
CHD9-209	ENST00000564255	HR	O43593	1189 aa		4.56	□□□□□ -1.68
CHD9-209	ENST00000564255	LMOD1	P29536	600 aa	Predicted RBP	4.56	□□□□□ -1.68
CHD9-209	ENST00000564255	LRCH3	Q96II8	777 aa		4.56	□□□□□ -1.68
CHD9-209	ENST00000564255	MAFB	Q9Y5Q3	323 aa	Predicted RBP	4.56	□□□□□ -1.68
CHD9-209	ENST00000564255	FAM205C	A6NFA0	338 aa		4.55	□□□□□ -1.68
CHD9-209	ENST00000564255	RGS22	Q8NE09	1264 aa		4.55	□□□□□ -1.68
CHD9-209	ENST00000564255	THAP11	Q96EK4	314 aa		4.55	□□□□□ -1.68
CHD9-209	ENST00000564255	TMEM88B	A6NKF7	163 aa		4.55	□□□□□ -1.68
CHD9-209	ENST00000564255	ATP9B	O43861	1147 aa		4.55	□□□□□ -1.68
CHD9-209	ENST00000564255	EIF4G2	P78344	907 aa	Known RBP eCLIP	4.55	□□□□□ -1.68
CHD9-209	ENST00000564255	PUS10	Q3MIT2	529 aa	Known RBP	4.55	□□□□□ -1.68
CHD9-209	ENST00000564255	BLOC1S3	Q6QNY0	202 aa		4.55	□□□□□ -1.68
CHD9-209	ENST00000564255	RNF19B	Q6ZMZ0	732 aa		4.55	□□□□□ -1.68
CHD9-209	ENST00000564255	MRPL50	Q8N5N7	158 aa	Known RBP	4.55	□□□□□ -1.68
CHD9-209	ENST00000564255	GZF1	Q9H116	711 aa	Predicted RBP	4.55	□□□□□ -1.68
CHD9-209	ENST00000564255	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	4.55	□□□□□ -1.68
CHD9-209	ENST00000564255	POTEB3	A0JP26	581 aa		4.55	□□□□□ -1.68
CHD9-209	ENST00000564255	RNF40	O75150	1001 aa		4.55	□□□□□ -1.68
CHD9-209	ENST00000564255	JUND	P17535	347 aa		4.55	□□□□□ -1.68
CHD9-209	ENST00000564255	ELOA	Q14241	798 aa	Known RBP	4.55	□□□□□ -1.68
CHD9-209	ENST00000564255	POTEB	Q6S5H4	581 aa		4.55	□□□□□ -1.68
CHD9-209	ENST00000564255	TBC1D9	Q6ZT07	1266 aa		4.55	□□□□□ -1.68
CHD9-209	ENST00000564255	USB1	Q9BQ65	265 aa	Known RBP	4.55	□□□□□ -1.68
CHD9-209	ENST00000564255	ADGRD1	Q6QNK2	874 aa		4.54	□□□□□ -1.68
CHD9-209	ENST00000564255	NFATC2IP	Q8NCF5	419 aa		4.54	□□□□□ -1.68

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