RNA–Protein interactions for RNA: ENST00000564247.1

CMTM3-208, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 2

Gene CMTM3, Length 1,127 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-208ENST00000564247 CFAP70Q5T0N1 1121 aa23.99■■□□□ 1.43
CMTM3-208ENST00000564247 BRINP3Q76B58 766 aa23.99■■□□□ 1.43
CMTM3-208ENST00000564247 STK26Q9P289 416 aa23.99■■□□□ 1.43
CMTM3-208ENST00000564247 COL16A1Q07092 1604 aaPredicted RBP23.98■■□□□ 1.43
CMTM3-208ENST00000564247 ROCK2O75116 1388 aaKnown RBP23.95■■□□□ 1.42
CMTM3-208ENST00000564247 SIRT1Q96EB6 747 aa23.95■■□□□ 1.42
CMTM3-208ENST00000564247 RALGAPBQ86X10 1494 aa23.94■■□□□ 1.42
CMTM3-208ENST00000564247 CARD11Q9BXL7 1154 aa23.94■■□□□ 1.42
CMTM3-208ENST00000564247 CDC42BPGQ6DT37 1551 aa23.94■■□□□ 1.42
CMTM3-208ENST00000564247 C1orf167Q5SNV9 1468 aa23.94■■□□□ 1.42
CMTM3-208ENST00000564247 KIAA1210Q9ULL0 1709 aa23.93■■□□□ 1.42
CMTM3-208ENST00000564247 NHSL1Q5SYE7 1610 aa23.93■■□□□ 1.42
CMTM3-208ENST00000564247 TRPM1Q7Z4N2 1603 aa23.93■■□□□ 1.42
CMTM3-208ENST00000564247 NBPF1Q3BBV0 1214 aa23.93■■□□□ 1.42
CMTM3-208ENST00000564247 WAPLQ7Z5K2 1190 aa23.93■■□□□ 1.42
CMTM3-208ENST00000564247 JCADQ9P266 1359 aa23.92■■□□□ 1.42
CMTM3-208ENST00000564247 ADGRB1O14514 1584 aa23.91■■□□□ 1.42
CMTM3-208ENST00000564247 PLEKHH1Q9ULM0 1364 aa23.91■■□□□ 1.42
CMTM3-208ENST00000564247 ILDR2Q71H61 639 aa23.89■■□□□ 1.41
CMTM3-208ENST00000564247 DLC1Q96QB1 1528 aa23.89■■□□□ 1.41
CMTM3-208ENST00000564247 GPRASP1Q5JY77 1395 aa23.87■■□□□ 1.41
CMTM3-208ENST00000564247 SHPRHQ149N8 1683 aa23.86■■□□□ 1.41
CMTM3-208ENST00000564247 EIF4G2P78344 907 aaKnown RBP eCLIP23.86■■□□□ 1.41
CMTM3-208ENST00000564247 PHF23Q9BUL5 403 aaPredicted RBP23.86■■□□□ 1.41
CMTM3-208ENST00000564247 ORAI2Q96SN7 254 aa23.84■■□□□ 1.41
CMTM3-208ENST00000564247 PRAM1Q96QH2 718 aa23.83■■□□□ 1.41
CMTM3-208ENST00000564247 FMN2Q9NZ56 1722 aa23.83■■□□□ 1.41
CMTM3-208ENST00000564247 SPATA31A6Q5VVP1 1343 aa23.82■■□□□ 1.4
CMTM3-208ENST00000564247 DDX17Q92841 729 aaKnown RBP23.8■■□□□ 1.4
CMTM3-208ENST00000564247 LRRC59Q96AG4 307 aaKnown RBP23.8■■□□□ 1.4
CMTM3-208ENST00000564247 TRAK1Q9UPV9 953 aa23.8■■□□□ 1.4
CMTM3-208ENST00000564247 POGKQ9P215 609 aa23.79■■□□□ 1.4
CMTM3-208ENST00000564247 USP47Q96K76 1375 aa23.78■■□□□ 1.4
CMTM3-208ENST00000564247 HSPA5P11021 654 aaKnown RBP23.78■■□□□ 1.4
CMTM3-208ENST00000564247 ESCO1Q5FWF5 840 aa23.78■■□□□ 1.4
CMTM3-208ENST00000564247 SOS2Q07890 1332 aaPredicted RBP23.77■■□□□ 1.4
CMTM3-208ENST00000564247 ADGRB2O60241 1585 aa23.77■■□□□ 1.4
CMTM3-208ENST00000564247 EIF3AQ14152 1382 aaKnown RBP23.77■■□□□ 1.4
CMTM3-208ENST00000564247 SAFB2Q14151 953 aaKnown RBP eCLIP23.76■■□□□ 1.39
CMTM3-208ENST00000564247 NUTM2FA1L443 756 aa23.75■■□□□ 1.39
CMTM3-208ENST00000564247 RGS17Q9UGC6 210 aaPredicted RBP23.75■■□□□ 1.39
CMTM3-208ENST00000564247 ARHGEF28Q8N1W1 1705 aaKnown RBP23.75■■□□□ 1.39
CMTM3-208ENST00000564247 LRP6O75581 1613 aa23.74■■□□□ 1.39
CMTM3-208ENST00000564247 RGPD8O14715 1765 aaPredicted RBP23.73■■□□□ 1.39
CMTM3-208ENST00000564247 ST20-MTHFSA0A0A6YYL1 179 aa23.73■■□□□ 1.39
CMTM3-208ENST00000564247 NPHP3Q7Z494 1330 aa23.73■■□□□ 1.39
CMTM3-208ENST00000564247 KIF1AQ12756 1690 aa23.73■■□□□ 1.39
CMTM3-208ENST00000564247 ZNF316A6NFI3 1004 aaPredicted RBP23.72■■□□□ 1.39
CMTM3-208ENST00000564247 HIRIP3Q9BW71 556 aaPredicted RBP23.72■■□□□ 1.39
CMTM3-208ENST00000564247 PNPLA6Q8IY17 1366 aa23.72■■□□□ 1.39
CMTM3-208ENST00000564247 SLC24A1O60721 1099 aa23.7■■□□□ 1.38
CMTM3-208ENST00000564247 PXDNQ92626 1479 aa23.69■■□□□ 1.38
CMTM3-208ENST00000564247 FOXO3O43524 673 aa23.69■■□□□ 1.38
CMTM3-208ENST00000564247 ANKARQ7Z5J8 1434 aa23.68■■□□□ 1.38
CMTM3-208ENST00000564247 USP32Q8NFA0 1604 aa23.68■■□□□ 1.38
CMTM3-208ENST00000564247 MINK1Q8N4C8 1332 aaPredicted RBP23.67■■□□□ 1.38
CMTM3-208ENST00000564247 CENPJQ9HC77 1338 aaPredicted RBP23.67■■□□□ 1.38
CMTM3-208ENST00000564247 SOCS7O14512 581 aa23.67■■□□□ 1.38
CMTM3-208ENST00000564247 MEX3CQ5U5Q3 659 aaKnown RBP23.67■■□□□ 1.38
CMTM3-208ENST00000564247 NUTM2BA6NNL0 878 aaPredicted RBP23.66■■□□□ 1.38
CMTM3-208ENST00000564247 NUTM2EB1AL46 878 aaPredicted RBP23.66■■□□□ 1.38
CMTM3-208ENST00000564247 NUTM2AQ8IVF1 878 aaPredicted RBP23.66■■□□□ 1.38
CMTM3-208ENST00000564247 PHF8Q9UPP1 1060 aa23.65■■□□□ 1.38
CMTM3-208ENST00000564247 COL22A1Q8NFW1 1626 aaPredicted RBP23.64■■□□□ 1.38
CMTM3-208ENST00000564247 WASLO00401 505 aaPredicted RBP23.64■■□□□ 1.37
CMTM3-208ENST00000564247 TULP4Q9NRJ4 1543 aa23.63■■□□□ 1.37
CMTM3-208ENST00000564247 XPCQ01831 940 aaPredicted RBP23.62■■□□□ 1.37
CMTM3-208ENST00000564247 POTEAQ6S8J7 498 aa23.62■■□□□ 1.37
CMTM3-208ENST00000564247 TMF1P82094 1093 aa23.6■■□□□ 1.37
CMTM3-208ENST00000564247 KRT28Q7Z3Y7 464 aa23.59■■□□□ 1.37
CMTM3-208ENST00000564247 TESK2Q96S53 571 aa23.59■■□□□ 1.37
CMTM3-208ENST00000564247 PRR36Q9H6K5 1346 aa23.59■■□□□ 1.37
CMTM3-208ENST00000564247 ZNF772Q68DY9 489 aaPredicted RBP23.58■■□□□ 1.37
CMTM3-208ENST00000564247 SPATA31A3Q5VYP0 1347 aa23.58■■□□□ 1.36
CMTM3-208ENST00000564247 CDCA8Q53HL2 280 aa23.57■■□□□ 1.36
CMTM3-208ENST00000564247 ITSN1Q15811 1721 aa23.56■■□□□ 1.36
CMTM3-208ENST00000564247 PSME1Q06323 249 aa23.56■■□□□ 1.36
CMTM3-208ENST00000564247 PMFBP1Q8TBY8 1022 aa23.56■■□□□ 1.36
CMTM3-208ENST00000564247 SBNO2Q9Y2G9 1366 aa23.55■■□□□ 1.36
CMTM3-208ENST00000564247 ATP7BP35670 1465 aa23.55■■□□□ 1.36
CMTM3-208ENST00000564247 QRICH2Q9H0J4 1663 aa23.54■■□□□ 1.36
CMTM3-208ENST00000564247 CDK19Q9BWU1 502 aa23.54■■□□□ 1.36
CMTM3-208ENST00000564247 SBNO1A3KN83 1393 aa23.53■■□□□ 1.36
CMTM3-208ENST00000564247 TNS3Q68CZ2 1445 aa23.53■■□□□ 1.36
CMTM3-208ENST00000564247 ADAMTS2O95450 1211 aa23.53■■□□□ 1.36
CMTM3-208ENST00000564247 AFF2P51816 1311 aa23.53■■□□□ 1.36
CMTM3-208ENST00000564247 EVC2Q86UK5 1308 aa23.53■■□□□ 1.36
CMTM3-208ENST00000564247 NUDT16Q96DE0 195 aaKnown RBP23.52■■□□□ 1.36
CMTM3-208ENST00000564247 C8orf37Q96NL8 207 aa23.52■■□□□ 1.36
CMTM3-208ENST00000564247 MARF1Q9Y4F3 1742 aaKnown RBP23.51■■□□□ 1.35
CMTM3-208ENST00000564247 POLR3GLQ9BT43 218 aa23.51■■□□□ 1.35
CMTM3-208ENST00000564247 TRPM3Q9HCF6 1732 aaPredicted RBP23.5■■□□□ 1.35
CMTM3-208ENST00000564247 C11orf95C9JLR9 678 aaPredicted RBP23.5■■□□□ 1.35
CMTM3-208ENST00000564247 TOPAZ1Q8N9V7 1692 aa23.5■■□□□ 1.35
CMTM3-208ENST00000564247 NGLY1Q96IV0 654 aa23.49■■□□□ 1.35
CMTM3-208ENST00000564247 NGDNQ8NEJ9 315 aaKnown RBP23.47■■□□□ 1.35
CMTM3-208ENST00000564247 CCDC61Q9Y6R9 512 aa23.47■■□□□ 1.35
CMTM3-208ENST00000564247 WASHC2AQ641Q2 1341 aa23.47■■□□□ 1.35
CMTM3-208ENST00000564247 ARHGEF10O15013 1369 aa23.47■■□□□ 1.35
CMTM3-208ENST00000564247 CCDC7Q96M83 1385 aa23.47■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms