RNA–Protein interactions for RNA: ENST00000563854.1

NME3-205, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 5

Gene NME3, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-205ENST00000563854 TECPR2O15040 1411 aa25.99■■□□□ 1.75
NME3-205ENST00000563854 YTHDC2Q9H6S0 1430 aaKnown RBP25.98■■□□□ 1.75
NME3-205ENST00000563854 LRRC59Q96AG4 307 aaKnown RBP25.98■■□□□ 1.75
NME3-205ENST00000563854 PLEKHH1Q9ULM0 1364 aa25.97■■□□□ 1.75
NME3-205ENST00000563854 ABCC11Q96J66 1382 aa25.96■■□□□ 1.75
NME3-205ENST00000563854 LAMC1P11047 1609 aa25.96■■□□□ 1.75
NME3-205ENST00000563854 CFAP70Q5T0N1 1121 aa25.96■■□□□ 1.75
NME3-205ENST00000563854 NRXN1Q9ULB1 1477 aa25.96■■□□□ 1.75
NME3-205ENST00000563854 NUTM2FA1L443 756 aa25.95■■□□□ 1.74
NME3-205ENST00000563854 C14orf93Q9H972 538 aaKnown RBP25.94■■□□□ 1.74
NME3-205ENST00000563854 ESCO1Q5FWF5 840 aa25.93■■□□□ 1.74
NME3-205ENST00000563854 PNPLA6Q8IY17 1366 aa25.93■■□□□ 1.74
NME3-205ENST00000563854 DHX57Q6P158 1386 aaKnown RBP25.92■■□□□ 1.74
NME3-205ENST00000563854 HRCP23327 699 aa25.91■■□□□ 1.74
NME3-205ENST00000563854 KDM2AQ9Y2K7 1162 aa25.91■■□□□ 1.74
NME3-205ENST00000563854 ZNF772Q68DY9 489 aaPredicted RBP25.88■■□□□ 1.73
NME3-205ENST00000563854 DCAF11Q8TEB1 546 aa25.88■■□□□ 1.73
NME3-205ENST00000563854 SOS2Q07890 1332 aaPredicted RBP25.88■■□□□ 1.73
NME3-205ENST00000563854 SAFB2Q14151 953 aaKnown RBP eCLIP25.87■■□□□ 1.73
NME3-205ENST00000563854 FMN2Q9NZ56 1722 aa25.86■■□□□ 1.73
NME3-205ENST00000563854 XPCQ01831 940 aaPredicted RBP25.85■■□□□ 1.73
NME3-205ENST00000563854 C8orf37Q96NL8 207 aa25.85■■□□□ 1.73
NME3-205ENST00000563854 NPHP3Q7Z494 1330 aa25.85■■□□□ 1.73
NME3-205ENST00000563854 PRAM1Q96QH2 718 aa25.84■■□□□ 1.73
NME3-205ENST00000563854 AFF2P51816 1311 aa25.84■■□□□ 1.73
NME3-205ENST00000563854 FOXO3O43524 673 aa25.83■■□□□ 1.73
NME3-205ENST00000563854 ADAMTS2O95450 1211 aa25.83■■□□□ 1.73
NME3-205ENST00000563854 POGKQ9P215 609 aa25.82■■□□□ 1.72
NME3-205ENST00000563854 SIRT1Q96EB6 747 aa25.81■■□□□ 1.72
NME3-205ENST00000563854 PXDNQ92626 1479 aa25.8■■□□□ 1.72
NME3-205ENST00000563854 ADGRB1O14514 1584 aa25.8■■□□□ 1.72
NME3-205ENST00000563854 TRAK1Q9UPV9 953 aa25.79■■□□□ 1.72
NME3-205ENST00000563854 DLC1Q96QB1 1528 aa25.78■■□□□ 1.72
NME3-205ENST00000563854 KIF1AQ12756 1690 aa25.77■■□□□ 1.72
NME3-205ENST00000563854 NGLY1Q96IV0 654 aa25.76■■□□□ 1.71
NME3-205ENST00000563854 COL22A1Q8NFW1 1626 aaPredicted RBP25.75■■□□□ 1.71
NME3-205ENST00000563854 RXRBP28702 533 aa25.75■■□□□ 1.71
NME3-205ENST00000563854 RGPD8O14715 1765 aaPredicted RBP25.74■■□□□ 1.71
NME3-205ENST00000563854 HIRIP3Q9BW71 556 aaPredicted RBP25.73■■□□□ 1.71
NME3-205ENST00000563854 STAC3Q96MF2 364 aa25.72■■□□□ 1.71
NME3-205ENST00000563854 MINK1Q8N4C8 1332 aaPredicted RBP25.71■■□□□ 1.71
NME3-205ENST00000563854 PHF8Q9UPP1 1060 aa25.71■■□□□ 1.71
NME3-205ENST00000563854 ADGRB2O60241 1585 aa25.7■■□□□ 1.71
NME3-205ENST00000563854 KRT28Q7Z3Y7 464 aa25.69■■□□□ 1.7
NME3-205ENST00000563854 QTRT2Q9H974 415 aaKnown RBP25.69■■□□□ 1.7
NME3-205ENST00000563854 USP32Q8NFA0 1604 aa25.66■■□□□ 1.7
NME3-205ENST00000563854 PLEKHG5O94827 1062 aa25.66■■□□□ 1.7
NME3-205ENST00000563854 USP21Q9UK80 565 aa25.66■■□□□ 1.7
NME3-205ENST00000563854 SPATA31A3Q5VYP0 1347 aa25.65■■□□□ 1.7
NME3-205ENST00000563854 ANKARQ7Z5J8 1434 aa25.65■■□□□ 1.7
NME3-205ENST00000563854 PMFBP1Q8TBY8 1022 aa25.65■■□□□ 1.7
NME3-205ENST00000563854 ARHGEF28Q8N1W1 1705 aaKnown RBP25.65■■□□□ 1.7
NME3-205ENST00000563854 RBM6P78332 1123 aaKnown RBP25.63■■□□□ 1.69
NME3-205ENST00000563854 PSME1Q06323 249 aa25.63■■□□□ 1.69
NME3-205ENST00000563854 LMOD2Q6P5Q4 547 aa25.63■■□□□ 1.69
NME3-205ENST00000563854 CDK12Q9NYV4 1490 aaPredicted RBP25.63■■□□□ 1.69
NME3-205ENST00000563854 TNS3Q68CZ2 1445 aa25.63■■□□□ 1.69
NME3-205ENST00000563854 MARF1Q9Y4F3 1742 aaKnown RBP25.62■■□□□ 1.69
NME3-205ENST00000563854 EIF3AQ14152 1382 aaKnown RBP25.61■■□□□ 1.69
NME3-205ENST00000563854 HAP1P54257 671 aaPredicted RBP25.61■■□□□ 1.69
NME3-205ENST00000563854 TULP4Q9NRJ4 1543 aa25.61■■□□□ 1.69
NME3-205ENST00000563854 RGS12O14924 1447 aa25.61■■□□□ 1.69
NME3-205ENST00000563854 WASLO00401 505 aaPredicted RBP25.59■■□□□ 1.69
NME3-205ENST00000563854 PRR36Q9H6K5 1346 aa25.59■■□□□ 1.69
NME3-205ENST00000563854 FNBP4Q8N3X1 1017 aaPredicted RBP25.58■■□□□ 1.69
NME3-205ENST00000563854 TRPC5Q9UL62 973 aaPredicted RBP25.58■■□□□ 1.69
NME3-205ENST00000563854 KIAA1210Q9ULL0 1709 aa25.57■■□□□ 1.68
NME3-205ENST00000563854 CABLES1Q8TDN4 633 aa25.56■■□□□ 1.68
NME3-205ENST00000563854 SBNO1A3KN83 1393 aa25.56■■□□□ 1.68
NME3-205ENST00000563854 ATRNO75882 1429 aa25.54■■□□□ 1.68
NME3-205ENST00000563854 NBPF1Q3BBV0 1214 aa25.54■■□□□ 1.68
NME3-205ENST00000563854 GPRASP1Q5JY77 1395 aa25.54■■□□□ 1.68
NME3-205ENST00000563854 UPF1Q92900 1129 aaKnown RBP eCLIP25.53■■□□□ 1.68
NME3-205ENST00000563854 SIN3AQ96ST3 1273 aa25.53■■□□□ 1.68
NME3-205ENST00000563854 ARHGEF10O15013 1369 aa25.53■■□□□ 1.68
NME3-205ENST00000563854 NEUROD1Q13562 356 aa25.52■■□□□ 1.68
NME3-205ENST00000563854 NGDNQ8NEJ9 315 aaKnown RBP25.52■■□□□ 1.68
NME3-205ENST00000563854 BCL9LQ86UU0 1499 aa25.52■■□□□ 1.68
NME3-205ENST00000563854 ABCA3Q99758 1704 aa25.51■■□□□ 1.67
NME3-205ENST00000563854 ATP7BP35670 1465 aa25.5■■□□□ 1.67
NME3-205ENST00000563854 ITSN1Q15811 1721 aa25.5■■□□□ 1.67
NME3-205ENST00000563854 L3MBTL2Q969R5 705 aa25.5■■□□□ 1.67
NME3-205ENST00000563854 TRPM3Q9HCF6 1732 aaPredicted RBP25.5■■□□□ 1.67
NME3-205ENST00000563854 NUDT16Q96DE0 195 aaKnown RBP25.48■■□□□ 1.67
NME3-205ENST00000563854 CDK19Q9BWU1 502 aa25.48■■□□□ 1.67
NME3-205ENST00000563854 PAK3O75914 559 aaPredicted RBP25.47■■□□□ 1.67
NME3-205ENST00000563854 SLIT2O94813 1529 aa25.46■■□□□ 1.67
NME3-205ENST00000563854 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.46■■□□□ 1.67
NME3-205ENST00000563854 UNC5CLQ8IV45 518 aa25.45■■□□□ 1.66
NME3-205ENST00000563854 ALS2Q96Q42 1657 aa25.45■■□□□ 1.66
NME3-205ENST00000563854 PLCH1Q4KWH8 1693 aa25.44■■□□□ 1.66
NME3-205ENST00000563854 GJD4Q96KN9 370 aaPredicted RBP25.43■■□□□ 1.66
NME3-205ENST00000563854 CENPJQ9HC77 1338 aaPredicted RBP25.42■■□□□ 1.66
NME3-205ENST00000563854 TOPAZ1Q8N9V7 1692 aa25.41■■□□□ 1.66
NME3-205ENST00000563854 QRICH2Q9H0J4 1663 aa25.41■■□□□ 1.66
NME3-205ENST00000563854 SRPK2P78362 688 aaKnown RBP25.4■■□□□ 1.66
NME3-205ENST00000563854 CCDC9Q9Y3X0 531 aaKnown RBP25.4■■□□□ 1.66
NME3-205ENST00000563854 ATAD2Q6PL18 1390 aa25.4■■□□□ 1.66
NME3-205ENST00000563854 TRPM1Q7Z4N2 1603 aa25.4■■□□□ 1.66
NME3-205ENST00000563854 RALGAPBQ86X10 1494 aa25.4■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms