RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 FNBP4Q8N3X1 1017 aaPredicted RBP16.1■□□□□ 0.17
SF3B3-204ENST00000563739 ABCA3Q99758 1704 aa16.06■□□□□ 0.16
SF3B3-204ENST00000563739 IFT172Q9UG01 1749 aa16.06■□□□□ 0.16
SF3B3-204ENST00000563739 NGLY1Q96IV0 654 aa16.06■□□□□ 0.16
SF3B3-204ENST00000563739 USP21Q9UK80 565 aa16.06■□□□□ 0.16
SF3B3-204ENST00000563739 KNDC1Q76NI1 1749 aa16.05■□□□□ 0.16
SF3B3-204ENST00000563739 FMN2Q9NZ56 1722 aa16.05■□□□□ 0.16
SF3B3-204ENST00000563739 SLIT2O94813 1529 aa16.04■□□□□ 0.16
SF3B3-204ENST00000563739 TRPC5Q9UL62 973 aaPredicted RBP16.04■□□□□ 0.16
SF3B3-204ENST00000563739 LRP5O75197 1615 aa16.04■□□□□ 0.16
SF3B3-204ENST00000563739 HFM1A2PYH4 1435 aa16.03■□□□□ 0.16
SF3B3-204ENST00000563739 NAIPQ13075 1403 aa16.03■□□□□ 0.16
SF3B3-204ENST00000563739 ZNF326Q5BKZ1 582 aaKnown RBP16.03■□□□□ 0.16
SF3B3-204ENST00000563739 USP32Q8NFA0 1604 aa16.03■□□□□ 0.16
SF3B3-204ENST00000563739 PLCH1Q4KWH8 1693 aa16.02■□□□□ 0.16
SF3B3-204ENST00000563739 RALGAPBQ86X10 1494 aa16.02■□□□□ 0.15
SF3B3-204ENST00000563739 TECPR2O15040 1411 aa16.01■□□□□ 0.15
SF3B3-204ENST00000563739 RGPD8O14715 1765 aaPredicted RBP15.99■□□□□ 0.15
SF3B3-204ENST00000563739 ITGAEP38570 1179 aa15.98■□□□□ 0.15
SF3B3-204ENST00000563739 KIF1AQ12756 1690 aa15.98■□□□□ 0.15
SF3B3-204ENST00000563739 NRAPQ86VF7 1730 aa15.97■□□□□ 0.15
SF3B3-204ENST00000563739 PLEKHH1Q9ULM0 1364 aa15.97■□□□□ 0.15
SF3B3-204ENST00000563739 NWD2Q9ULI1 1742 aa15.97■□□□□ 0.15
SF3B3-204ENST00000563739 XPCQ01831 940 aaPredicted RBP15.96■□□□□ 0.15
SF3B3-204ENST00000563739 BLMP54132 1417 aaPredicted RBP15.95■□□□□ 0.14
SF3B3-204ENST00000563739 RRBP1Q9P2E9 1410 aaKnown RBP15.95■□□□□ 0.14
SF3B3-204ENST00000563739 GJD4Q96KN9 370 aaPredicted RBP15.95■□□□□ 0.14
SF3B3-204ENST00000563739 ZRANB1Q9UGI0 708 aa15.95■□□□□ 0.14
SF3B3-204ENST00000563739 NPHP3Q7Z494 1330 aa15.94■□□□□ 0.14
SF3B3-204ENST00000563739 SPATA31E1Q6ZUB1 1445 aa15.93■□□□□ 0.14
SF3B3-204ENST00000563739 CRYBG1Q9Y4K1 1723 aa15.92■□□□□ 0.14
SF3B3-204ENST00000563739 DEFB132Q7Z7B7 95 aa15.92■□□□□ 0.14
SF3B3-204ENST00000563739 ADGRF5Q8IZF2 1346 aa15.92■□□□□ 0.14
SF3B3-204ENST00000563739 TRPM3Q9HCF6 1732 aaPredicted RBP15.91■□□□□ 0.14
SF3B3-204ENST00000563739 FOXO3O43524 673 aa15.91■□□□□ 0.14
SF3B3-204ENST00000563739 SPATA31A3Q5VYP0 1347 aa15.91■□□□□ 0.14
SF3B3-204ENST00000563739 LRPPRCP42704 1394 aaKnown RBP15.9■□□□□ 0.14
SF3B3-204ENST00000563739 VGFO15240 615 aaPredicted RBP15.9■□□□□ 0.14
SF3B3-204ENST00000563739 ESCO1Q5FWF5 840 aa15.9■□□□□ 0.14
SF3B3-204ENST00000563739 CCDC125Q86Z20 511 aa15.9■□□□□ 0.14
SF3B3-204ENST00000563739 TNS1Q9HBL0 1735 aaKnown RBP15.9■□□□□ 0.14
SF3B3-204ENST00000563739 RPGRIP1LQ68CZ1 1315 aa15.9■□□□□ 0.14
SF3B3-204ENST00000563739 PIK3C2GO75747 1445 aa15.89■□□□□ 0.13
SF3B3-204ENST00000563739 WAPLQ7Z5K2 1190 aa15.89■□□□□ 0.13
SF3B3-204ENST00000563739 PPARGC1BQ86YN6 1023 aaKnown RBP15.89■□□□□ 0.13
SF3B3-204ENST00000563739 TNS3Q68CZ2 1445 aa15.88■□□□□ 0.13
SF3B3-204ENST00000563739 UNC5CLQ8IV45 518 aa15.88■□□□□ 0.13
SF3B3-204ENST00000563739 CCDC144AA2RUR9 1427 aa15.87■□□□□ 0.13
SF3B3-204ENST00000563739 ALS2Q96Q42 1657 aa15.87■□□□□ 0.13
SF3B3-204ENST00000563739 ABCC11Q96J66 1382 aa15.87■□□□□ 0.13
SF3B3-204ENST00000563739 NRXN1Q9ULB1 1477 aa15.86■□□□□ 0.13
SF3B3-204ENST00000563739 NUTM2FA1L443 756 aa15.86■□□□□ 0.13
SF3B3-204ENST00000563739 THSD7AQ9UPZ6 1657 aa15.86■□□□□ 0.13
SF3B3-204ENST00000563739 YTHDC2Q9H6S0 1430 aaKnown RBP15.85■□□□□ 0.13
SF3B3-204ENST00000563739 ONECUT3O60422 494 aaPredicted RBP15.84■□□□□ 0.13
SF3B3-204ENST00000563739 IFFO2Q5TF58 517 aa15.84■□□□□ 0.13
SF3B3-204ENST00000563739 RGPD1P0DJD0 1748 aa15.84■□□□□ 0.13
SF3B3-204ENST00000563739 ADGRB2O60241 1585 aa15.83■□□□□ 0.13
SF3B3-204ENST00000563739 SEPT12Q8IYM1 358 aa15.83■□□□□ 0.12
SF3B3-204ENST00000563739 VPS72Q15906 364 aa15.82■□□□□ 0.12
SF3B3-204ENST00000563739 FOXD1Q16676 465 aa15.82■□□□□ 0.12
SF3B3-204ENST00000563739 TMEM132EQ6IEE7 984 aa15.81■□□□□ 0.12
SF3B3-204ENST00000563739 CABLES1Q8TDN4 633 aa15.81■□□□□ 0.12
SF3B3-204ENST00000563739 STK26Q9P289 416 aa15.8■□□□□ 0.12
SF3B3-204ENST00000563739 COL14A1Q05707 1796 aaKnown RBP15.8■□□□□ 0.12
SF3B3-204ENST00000563739 SBNO1A3KN83 1393 aa15.79■□□□□ 0.12
SF3B3-204ENST00000563739 KRT28Q7Z3Y7 464 aa15.79■□□□□ 0.12
SF3B3-204ENST00000563739 ADGRB1O14514 1584 aa15.78■□□□□ 0.12
SF3B3-204ENST00000563739 DISP2A7MBM2 1401 aa15.77■□□□□ 0.12
SF3B3-204ENST00000563739 ANKRD30BQ9BXX2 1392 aa15.77■□□□□ 0.12
SF3B3-204ENST00000563739 RREB1Q92766 1687 aa15.77■□□□□ 0.12
SF3B3-204ENST00000563739 PSDA5PKW4 1024 aaPredicted RBP15.77■□□□□ 0.12
SF3B3-204ENST00000563739 HRCP23327 699 aa15.77■□□□□ 0.12
SF3B3-204ENST00000563739 SLC4A1APQ9BWU0 796 aaKnown RBP15.77■□□□□ 0.12
SF3B3-204ENST00000563739 DLC1Q96QB1 1528 aa15.77■□□□□ 0.11
SF3B3-204ENST00000563739 FAM83GA6ND36 823 aa15.75■□□□□ 0.11
SF3B3-204ENST00000563739 KRT27Q7Z3Y8 459 aa15.75■□□□□ 0.11
SF3B3-204ENST00000563739 PHF8Q9UPP1 1060 aa15.75■□□□□ 0.11
SF3B3-204ENST00000563739 PHRF1Q9P1Y6 1649 aaKnown RBP15.75■□□□□ 0.11
SF3B3-204ENST00000563739 NUP188Q5SRE5 1749 aa15.74■□□□□ 0.11
SF3B3-204ENST00000563739 SIRT1Q96EB6 747 aa15.73■□□□□ 0.11
SF3B3-204ENST00000563739 ANKARQ7Z5J8 1434 aa15.73■□□□□ 0.11
SF3B3-204ENST00000563739 RGL3Q3MIN7 710 aa15.72■□□□□ 0.11
SF3B3-204ENST00000563739 ARHGEF10O15013 1369 aa15.72■□□□□ 0.11
SF3B3-204ENST00000563739 PRR36Q9H6K5 1346 aa15.71■□□□□ 0.11
SF3B3-204ENST00000563739 FAM182BQ5T319 152 aa15.71■□□□□ 0.11
SF3B3-204ENST00000563739 C14orf93Q9H972 538 aaKnown RBP15.7■□□□□ 0.1
SF3B3-204ENST00000563739 TULP4Q9NRJ4 1543 aa15.69■□□□□ 0.1
SF3B3-204ENST00000563739 PLEKHG5O94827 1062 aa15.69■□□□□ 0.1
SF3B3-204ENST00000563739 FAM98CQ17RN3 349 aaKnown RBP15.69■□□□□ 0.1
SF3B3-204ENST00000563739 EN1Q05925 392 aaPredicted RBP15.68■□□□□ 0.1
SF3B3-204ENST00000563739 CFAP70Q5T0N1 1121 aa15.68■□□□□ 0.1
SF3B3-204ENST00000563739 SPATA31A5Q5VU36 1347 aa15.68■□□□□ 0.1
SF3B3-204ENST00000563739 SPATA31A7Q8IWB4 1347 aa15.68■□□□□ 0.1
SF3B3-204ENST00000563739 TOPAZ1Q8N9V7 1692 aa15.67■□□□□ 0.1
SF3B3-204ENST00000563739 ARHGEF28Q8N1W1 1705 aaKnown RBP15.67■□□□□ 0.1
SF3B3-204ENST00000563739 BAG6P46379 1132 aa15.66■□□□□ 0.1
SF3B3-204ENST00000563739 SF3B2Q13435 895 aaKnown RBP15.66■□□□□ 0.1
SF3B3-204ENST00000563739 PMFBP1Q8TBY8 1022 aa15.66■□□□□ 0.1
SF3B3-204ENST00000563739 PRAM1Q96QH2 718 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms