RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 SLAIN2Q9P270 581 aa24■■□□□ 1.43
CLK3-207ENST00000562389 NBPF1Q3BBV0 1214 aa23.99■■□□□ 1.43
CLK3-207ENST00000562389 TRAK1Q9UPV9 953 aa23.99■■□□□ 1.43
CLK3-207ENST00000562389 MST1RQ04912 1400 aa23.99■■□□□ 1.43
CLK3-207ENST00000562389 CCER1Q8TC90 406 aaPredicted RBP23.98■■□□□ 1.43
CLK3-207ENST00000562389 PRAM1Q96QH2 718 aa23.97■■□□□ 1.43
CLK3-207ENST00000562389 NBPF8Q3BBV2 869 aa23.96■■□□□ 1.43
CLK3-207ENST00000562389 ADGRB2O60241 1585 aa23.95■■□□□ 1.43
CLK3-207ENST00000562389 POGKQ9P215 609 aa23.94■■□□□ 1.42
CLK3-207ENST00000562389 TIMELESSQ9UNS1 1208 aa23.94■■□□□ 1.42
CLK3-207ENST00000562389 FMN2Q9NZ56 1722 aa23.93■■□□□ 1.42
CLK3-207ENST00000562389 ROCK2O75116 1388 aaKnown RBP23.93■■□□□ 1.42
CLK3-207ENST00000562389 RALGAPBQ86X10 1494 aa23.93■■□□□ 1.42
CLK3-207ENST00000562389 C1orf167Q5SNV9 1468 aa23.92■■□□□ 1.42
CLK3-207ENST00000562389 GPRASP1Q5JY77 1395 aa23.91■■□□□ 1.42
CLK3-207ENST00000562389 HSPA1LP34931 641 aa23.91■■□□□ 1.42
CLK3-207ENST00000562389 SAFB2Q14151 953 aaKnown RBP eCLIP23.9■■□□□ 1.42
CLK3-207ENST00000562389 AHDC1Q5TGY3 1603 aaPredicted RBP23.88■■□□□ 1.41
CLK3-207ENST00000562389 PHLPP1O60346 1717 aa23.87■■□□□ 1.41
CLK3-207ENST00000562389 BRINP3Q76B58 766 aa23.87■■□□□ 1.41
CLK3-207ENST00000562389 NHSL1Q5SYE7 1610 aa23.86■■□□□ 1.41
CLK3-207ENST00000562389 QRICH2Q9H0J4 1663 aa23.85■■□□□ 1.41
CLK3-207ENST00000562389 MINK1Q8N4C8 1332 aaPredicted RBP23.84■■□□□ 1.41
CLK3-207ENST00000562389 COL16A1Q07092 1604 aaPredicted RBP23.83■■□□□ 1.41
CLK3-207ENST00000562389 CENPJQ9HC77 1338 aaPredicted RBP23.83■■□□□ 1.4
CLK3-207ENST00000562389 EIF3AQ14152 1382 aaKnown RBP23.82■■□□□ 1.4
CLK3-207ENST00000562389 RGPD8O14715 1765 aaPredicted RBP23.82■■□□□ 1.4
CLK3-207ENST00000562389 USP32Q8NFA0 1604 aa23.81■■□□□ 1.4
CLK3-207ENST00000562389 HIRIP3Q9BW71 556 aaPredicted RBP23.81■■□□□ 1.4
CLK3-207ENST00000562389 TULP4Q9NRJ4 1543 aa23.8■■□□□ 1.4
CLK3-207ENST00000562389 ANKARQ7Z5J8 1434 aa23.8■■□□□ 1.4
CLK3-207ENST00000562389 CARD11Q9BXL7 1154 aa23.8■■□□□ 1.4
CLK3-207ENST00000562389 KIF1AQ12756 1690 aa23.79■■□□□ 1.4
CLK3-207ENST00000562389 ORAI2Q96SN7 254 aa23.79■■□□□ 1.4
CLK3-207ENST00000562389 NUTM2FA1L443 756 aa23.78■■□□□ 1.4
CLK3-207ENST00000562389 WASLO00401 505 aaPredicted RBP23.78■■□□□ 1.4
CLK3-207ENST00000562389 ESCO1Q5FWF5 840 aa23.76■■□□□ 1.39
CLK3-207ENST00000562389 ITSN1Q15811 1721 aa23.75■■□□□ 1.39
CLK3-207ENST00000562389 ATP7BP35670 1465 aa23.73■■□□□ 1.39
CLK3-207ENST00000562389 TOPAZ1Q8N9V7 1692 aa23.71■■□□□ 1.39
CLK3-207ENST00000562389 SBNO2Q9Y2G9 1366 aa23.71■■□□□ 1.39
CLK3-207ENST00000562389 PRR36Q9H6K5 1346 aa23.71■■□□□ 1.39
CLK3-207ENST00000562389 SHPRHQ149N8 1683 aa23.7■■□□□ 1.39
CLK3-207ENST00000562389 NPHP3Q7Z494 1330 aa23.7■■□□□ 1.38
CLK3-207ENST00000562389 DDX17Q92841 729 aaKnown RBP23.7■■□□□ 1.38
CLK3-207ENST00000562389 CDK19Q9BWU1 502 aa23.7■■□□□ 1.38
CLK3-207ENST00000562389 JCADQ9P266 1359 aa23.69■■□□□ 1.38
CLK3-207ENST00000562389 SOS2Q07890 1332 aaPredicted RBP23.69■■□□□ 1.38
CLK3-207ENST00000562389 PXDNQ92626 1479 aa23.68■■□□□ 1.38
CLK3-207ENST00000562389 PHF8Q9UPP1 1060 aa23.68■■□□□ 1.38
CLK3-207ENST00000562389 NUDT16Q96DE0 195 aaKnown RBP23.66■■□□□ 1.38
CLK3-207ENST00000562389 EVC2Q86UK5 1308 aa23.65■■□□□ 1.38
CLK3-207ENST00000562389 FOXO3O43524 673 aa23.65■■□□□ 1.38
CLK3-207ENST00000562389 LRRC59Q96AG4 307 aaKnown RBP23.64■■□□□ 1.37
CLK3-207ENST00000562389 MED1Q15648 1581 aaPredicted RBP23.64■■□□□ 1.37
CLK3-207ENST00000562389 USP47Q96K76 1375 aa23.64■■□□□ 1.37
CLK3-207ENST00000562389 SRPK2P78362 688 aaKnown RBP23.63■■□□□ 1.37
CLK3-207ENST00000562389 PMFBP1Q8TBY8 1022 aa23.61■■□□□ 1.37
CLK3-207ENST00000562389 CCDC61Q9Y6R9 512 aa23.61■■□□□ 1.37
CLK3-207ENST00000562389 CABP2Q9NPB3 220 aa23.6■■□□□ 1.37
CLK3-207ENST00000562389 PNPLA6Q8IY17 1366 aa23.6■■□□□ 1.37
CLK3-207ENST00000562389 ST20-MTHFSA0A0A6YYL1 179 aa23.59■■□□□ 1.37
CLK3-207ENST00000562389 TRPM3Q9HCF6 1732 aaPredicted RBP23.59■■□□□ 1.37
CLK3-207ENST00000562389 COL22A1Q8NFW1 1626 aaPredicted RBP23.59■■□□□ 1.37
CLK3-207ENST00000562389 SPATA31A6Q5VVP1 1343 aa23.59■■□□□ 1.37
CLK3-207ENST00000562389 XPCQ01831 940 aaPredicted RBP23.58■■□□□ 1.37
CLK3-207ENST00000562389 PPIP5K1Q6PFW1 1433 aa23.58■■□□□ 1.36
CLK3-207ENST00000562389 POLR3AO14802 1390 aaPredicted RBP23.57■■□□□ 1.36
CLK3-207ENST00000562389 KRT28Q7Z3Y7 464 aa23.57■■□□□ 1.36
CLK3-207ENST00000562389 TESK2Q96S53 571 aa23.57■■□□□ 1.36
CLK3-207ENST00000562389 SBNO1A3KN83 1393 aa23.56■■□□□ 1.36
CLK3-207ENST00000562389 PLEKHG3A1L390 1219 aa23.56■■□□□ 1.36
CLK3-207ENST00000562389 PSME1Q06323 249 aa23.56■■□□□ 1.36
CLK3-207ENST00000562389 ATAD2Q6PL18 1390 aa23.55■■□□□ 1.36
CLK3-207ENST00000562389 SLC24A1O60721 1099 aa23.55■■□□□ 1.36
CLK3-207ENST00000562389 NGDNQ8NEJ9 315 aaKnown RBP23.55■■□□□ 1.36
CLK3-207ENST00000562389 TNS3Q68CZ2 1445 aa23.55■■□□□ 1.36
CLK3-207ENST00000562389 SPATA31A3Q5VYP0 1347 aa23.54■■□□□ 1.36
CLK3-207ENST00000562389 LRP6O75581 1613 aa23.53■■□□□ 1.36
CLK3-207ENST00000562389 ALS2Q96Q42 1657 aa23.53■■□□□ 1.36
CLK3-207ENST00000562389 ACEP12821 1306 aa23.52■■□□□ 1.36
CLK3-207ENST00000562389 PUS7Q96PZ0 661 aaKnown RBP23.51■■□□□ 1.35
CLK3-207ENST00000562389 AKAP12Q02952 1782 aa23.5■■□□□ 1.35
CLK3-207ENST00000562389 CABP1Q9NZU7 370 aa23.49■■□□□ 1.35
CLK3-207ENST00000562389 ARHGEF10O15013 1369 aa23.48■■□□□ 1.35
CLK3-207ENST00000562389 EIF4G2P78344 907 aaKnown RBP eCLIP23.46■■□□□ 1.35
CLK3-207ENST00000562389 TMF1P82094 1093 aa23.46■■□□□ 1.35
CLK3-207ENST00000562389 DISP3Q9P2K9 1392 aa23.46■■□□□ 1.35
CLK3-207ENST00000562389 ABCA3Q99758 1704 aa23.45■■□□□ 1.34
CLK3-207ENST00000562389 BRD4O60885 1362 aaPredicted RBP23.45■■□□□ 1.34
CLK3-207ENST00000562389 USP6P35125 1406 aa23.44■■□□□ 1.34
CLK3-207ENST00000562389 NUTM2BA6NNL0 878 aaPredicted RBP23.44■■□□□ 1.34
CLK3-207ENST00000562389 NUTM2EB1AL46 878 aaPredicted RBP23.44■■□□□ 1.34
CLK3-207ENST00000562389 NUTM2AQ8IVF1 878 aaPredicted RBP23.44■■□□□ 1.34
CLK3-207ENST00000562389 CPSF1Q10570 1443 aaKnown RBP23.43■■□□□ 1.34
CLK3-207ENST00000562389 MON2Q7Z3U7 1717 aa23.43■■□□□ 1.34
CLK3-207ENST00000562389 MARF1Q9Y4F3 1742 aaKnown RBP23.43■■□□□ 1.34
CLK3-207ENST00000562389 CRYBG1Q9Y4K1 1723 aa23.42■■□□□ 1.34
CLK3-207ENST00000562389 NINLQ9Y2I6 1382 aa23.42■■□□□ 1.34
CLK3-207ENST00000562389 NRKQ7Z2Y5 1582 aa23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms