RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 TECPR2O15040 1411 aa15.13■□□□□ 0.01
CLK3-205ENST00000561673 MEX3CQ5U5Q3 659 aaKnown RBP15.13■□□□□ 0.01
CLK3-205ENST00000561673 NUTM2AQ8IVF1 878 aaPredicted RBP15.13■□□□□ 0.01
CLK3-205ENST00000561673 NRXN1Q9ULB1 1477 aa15.12■□□□□ 0.01
CLK3-205ENST00000561673 PLEKHH1Q9ULM0 1364 aa15.11■□□□□ 0.01
CLK3-205ENST00000561673 YTHDC2Q9H6S0 1430 aaKnown RBP15.11■□□□□ 0.01
CLK3-205ENST00000561673 NHSL1Q5SYE7 1610 aa15.11■□□□□ 0.01
CLK3-205ENST00000561673 SHPRHQ149N8 1683 aa15.1■□□□□ 0.01
CLK3-205ENST00000561673 MYOM2P54296 1465 aa15.1■□□□□ 0.01
CLK3-205ENST00000561673 ESCO1Q5FWF5 840 aa15.1■□□□□ 0.01
CLK3-205ENST00000561673 SIRT1Q96EB6 747 aa15.1■□□□□ 0.01
CLK3-205ENST00000561673 KDM2AQ9Y2K7 1162 aa15.09■□□□□ 0.01
CLK3-205ENST00000561673 SOS2Q07890 1332 aaPredicted RBP15.09■□□□□ 0.01
CLK3-205ENST00000561673 DHX57Q6P158 1386 aaKnown RBP15.09■□□□□ 0.01
CLK3-205ENST00000561673 NUTM2FA1L443 756 aa15.08■□□□□ 0
CLK3-205ENST00000561673 DCAF11Q8TEB1 546 aa15.08■□□□□ 0
CLK3-205ENST00000561673 PNPLA6Q8IY17 1366 aa15.08■□□□□ 0
CLK3-205ENST00000561673 ZNF772Q68DY9 489 aaPredicted RBP15.07■□□□□ 0
CLK3-205ENST00000561673 CDC42BPGQ6DT37 1551 aa15.07■□□□□ 0
CLK3-205ENST00000561673 FOXO3O43524 673 aa15.05■□□□□ -0
CLK3-205ENST00000561673 PRAM1Q96QH2 718 aa15.05■□□□□ -0
CLK3-205ENST00000561673 LAMC1P11047 1609 aa15.05■□□□□ -0
CLK3-205ENST00000561673 KNDC1Q76NI1 1749 aa15.04■□□□□ -0
CLK3-205ENST00000561673 NPHP3Q7Z494 1330 aa15.04■□□□□ -0
CLK3-205ENST00000561673 SAFB2Q14151 953 aaKnown RBP eCLIP15.04■□□□□ -0
CLK3-205ENST00000561673 STAC3Q96MF2 364 aa15.04■□□□□ -0
CLK3-205ENST00000561673 AFF2P51816 1311 aa15.03■□□□□ -0
CLK3-205ENST00000561673 XPCQ01831 940 aaPredicted RBP15.03■□□□□ -0
CLK3-205ENST00000561673 C8orf37Q96NL8 207 aa15.03■□□□□ -0
CLK3-205ENST00000561673 ADAMTS2O95450 1211 aa15.02■□□□□ -0
CLK3-205ENST00000561673 PIAS4Q8N2W9 510 aaPredicted RBP15.02■□□□□ -0
CLK3-205ENST00000561673 POGKQ9P215 609 aa15.02■□□□□ -0
CLK3-205ENST00000561673 TRAK1Q9UPV9 953 aa15.02■□□□□ -0
CLK3-205ENST00000561673 ADGRB1O14514 1584 aa15□□□□□ -0.01
CLK3-205ENST00000561673 RXRBP28702 533 aa15□□□□□ -0.01
CLK3-205ENST00000561673 PXDNQ92626 1479 aa15□□□□□ -0.01
CLK3-205ENST00000561673 NGLY1Q96IV0 654 aa14.99□□□□□ -0.01
CLK3-205ENST00000561673 DLC1Q96QB1 1528 aa14.98□□□□□ -0.01
CLK3-205ENST00000561673 HIRIP3Q9BW71 556 aaPredicted RBP14.98□□□□□ -0.01
CLK3-205ENST00000561673 QTRT2Q9H974 415 aaKnown RBP14.98□□□□□ -0.01
CLK3-205ENST00000561673 PHF8Q9UPP1 1060 aa14.98□□□□□ -0.01
CLK3-205ENST00000561673 KRT28Q7Z3Y7 464 aa14.97□□□□□ -0.01
CLK3-205ENST00000561673 FMN2Q9NZ56 1722 aa14.97□□□□□ -0.01
CLK3-205ENST00000561673 SPATA31A3Q5VYP0 1347 aa14.95□□□□□ -0.02
CLK3-205ENST00000561673 MINK1Q8N4C8 1332 aaPredicted RBP14.95□□□□□ -0.02
CLK3-205ENST00000561673 FNBP4Q8N3X1 1017 aaPredicted RBP14.94□□□□□ -0.02
CLK3-205ENST00000561673 USP21Q9UK80 565 aa14.94□□□□□ -0.02
CLK3-205ENST00000561673 COL22A1Q8NFW1 1626 aaPredicted RBP14.93□□□□□ -0.02
CLK3-205ENST00000561673 RBM6P78332 1123 aaKnown RBP14.93□□□□□ -0.02
CLK3-205ENST00000561673 PSME1Q06323 249 aa14.93□□□□□ -0.02
CLK3-205ENST00000561673 PMFBP1Q8TBY8 1022 aa14.93□□□□□ -0.02
CLK3-205ENST00000561673 WASLO00401 505 aaPredicted RBP14.92□□□□□ -0.02
CLK3-205ENST00000561673 PPP4R3CPQ6ZMV5 832 aa14.92□□□□□ -0.02
CLK3-205ENST00000561673 ANKARQ7Z5J8 1434 aa14.92□□□□□ -0.02
CLK3-205ENST00000561673 KIF1AQ12756 1690 aa14.91□□□□□ -0.02
CLK3-205ENST00000561673 NBPF1Q3BBV0 1214 aa14.91□□□□□ -0.02
CLK3-205ENST00000561673 PRR36Q9H6K5 1346 aa14.91□□□□□ -0.02
CLK3-205ENST00000561673 ADGRB2O60241 1585 aa14.9□□□□□ -0.02
CLK3-205ENST00000561673 CDK12Q9NYV4 1490 aaPredicted RBP14.9□□□□□ -0.02
CLK3-205ENST00000561673 TRPC5Q9UL62 973 aaPredicted RBP14.9□□□□□ -0.02
CLK3-205ENST00000561673 RGPD8O14715 1765 aaPredicted RBP14.9□□□□□ -0.02
CLK3-205ENST00000561673 SBNO1A3KN83 1393 aa14.89□□□□□ -0.03
CLK3-205ENST00000561673 UPF1Q92900 1129 aaKnown RBP eCLIP14.89□□□□□ -0.03
CLK3-205ENST00000561673 SIN3AQ96ST3 1273 aa14.89□□□□□ -0.03
CLK3-205ENST00000561673 USP32Q8NFA0 1604 aa14.88□□□□□ -0.03
CLK3-205ENST00000561673 LMOD2Q6P5Q4 547 aa14.88□□□□□ -0.03
CLK3-205ENST00000561673 CABLES1Q8TDN4 633 aa14.88□□□□□ -0.03
CLK3-205ENST00000561673 L3MBTL2Q969R5 705 aa14.88□□□□□ -0.03
CLK3-205ENST00000561673 TNS3Q68CZ2 1445 aa14.88□□□□□ -0.03
CLK3-205ENST00000561673 BCL9LQ86UU0 1499 aa14.88□□□□□ -0.03
CLK3-205ENST00000561673 EIF3AQ14152 1382 aaKnown RBP14.87□□□□□ -0.03
CLK3-205ENST00000561673 PLEKHG5O94827 1062 aa14.87□□□□□ -0.03
CLK3-205ENST00000561673 RGS12O14924 1447 aa14.86□□□□□ -0.03
CLK3-205ENST00000561673 ATRNO75882 1429 aa14.86□□□□□ -0.03
CLK3-205ENST00000561673 NEUROD1Q13562 356 aa14.86□□□□□ -0.03
CLK3-205ENST00000561673 NUDT16Q96DE0 195 aaKnown RBP14.86□□□□□ -0.03
CLK3-205ENST00000561673 CDK19Q9BWU1 502 aa14.86□□□□□ -0.03
CLK3-205ENST00000561673 TULP4Q9NRJ4 1543 aa14.86□□□□□ -0.03
CLK3-205ENST00000561673 ARHGEF10O15013 1369 aa14.85□□□□□ -0.03
CLK3-205ENST00000561673 HAP1P54257 671 aaPredicted RBP14.85□□□□□ -0.03
CLK3-205ENST00000561673 NGDNQ8NEJ9 315 aaKnown RBP14.85□□□□□ -0.03
CLK3-205ENST00000561673 GPRASP1Q5JY77 1395 aa14.85□□□□□ -0.03
CLK3-205ENST00000561673 ARHGEF28Q8N1W1 1705 aaKnown RBP14.84□□□□□ -0.03
CLK3-205ENST00000561673 UNC5CLQ8IV45 518 aa14.84□□□□□ -0.03
CLK3-205ENST00000561673 GJD4Q96KN9 370 aaPredicted RBP14.83□□□□□ -0.04
CLK3-205ENST00000561673 KIAA1210Q9ULL0 1709 aa14.83□□□□□ -0.04
CLK3-205ENST00000561673 SLIT2O94813 1529 aa14.82□□□□□ -0.04
CLK3-205ENST00000561673 FAM83GA6ND36 823 aa14.81□□□□□ -0.04
CLK3-205ENST00000561673 PAK3O75914 559 aaPredicted RBP14.81□□□□□ -0.04
CLK3-205ENST00000561673 ATP7BP35670 1465 aa14.81□□□□□ -0.04
CLK3-205ENST00000561673 MARF1Q9Y4F3 1742 aaKnown RBP14.8□□□□□ -0.04
CLK3-205ENST00000561673 CCDC61Q9Y6R9 512 aa14.8□□□□□ -0.04
CLK3-205ENST00000561673 CENPJQ9HC77 1338 aaPredicted RBP14.8□□□□□ -0.04
CLK3-205ENST00000561673 EP400Q96L91 3159 aa14.8□□□□□ -0.04
CLK3-205ENST00000561673 TRPM3Q9HCF6 1732 aaPredicted RBP14.78□□□□□ -0.04
CLK3-205ENST00000561673 ACEP12821 1306 aa14.78□□□□□ -0.04
CLK3-205ENST00000561673 PLEKHG3A1L390 1219 aa14.78□□□□□ -0.04
CLK3-205ENST00000561673 NBPF8Q3BBV2 869 aa14.78□□□□□ -0.04
CLK3-205ENST00000561673 SRPK2P78362 688 aaKnown RBP14.77□□□□□ -0.05
CLK3-205ENST00000561673 VPS72Q15906 364 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 123.9 ms