RNA–Protein interactions for RNA: ENST00000561623.5

GTF3C1-202, Transcript of general transcription factor IIIC subunit 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene GTF3C1, Length 7,015 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-202ENST00000561623 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.34□□□□□ -0.43
GTF3C1-202ENST00000561623 CCDC73Q6ZRK6 1079 aa12.33□□□□□ -0.43
GTF3C1-202ENST00000561623 CCDC66A2RUB6 948 aa12.33□□□□□ -0.44
GTF3C1-202ENST00000561623 DIAPH1O60610 1272 aaKnown RBP12.33□□□□□ -0.44
GTF3C1-202ENST00000561623 AKAP17AQ02040 695 aaKnown RBP12.33□□□□□ -0.44
GTF3C1-202ENST00000561623 CCDC184Q52MB2 194 aa12.33□□□□□ -0.44
GTF3C1-202ENST00000561623 SMARCA2P51531 1590 aa12.33□□□□□ -0.44
GTF3C1-202ENST00000561623 BRD4O60885 1362 aaPredicted RBP12.33□□□□□ -0.44
GTF3C1-202ENST00000561623 IPO7O95373 1038 aaKnown RBP12.33□□□□□ -0.44
GTF3C1-202ENST00000561623 CPLX1O14810 134 aa12.33□□□□□ -0.44
GTF3C1-202ENST00000561623 RRP9O43818 475 aaKnown RBP12.33□□□□□ -0.44
GTF3C1-202ENST00000561623 BCAR3O75815 825 aa12.33□□□□□ -0.44
GTF3C1-202ENST00000561623 HSP90B2PQ58FF3 399 aa12.33□□□□□ -0.44
GTF3C1-202ENST00000561623 NGEFQ8N5V2 710 aa12.33□□□□□ -0.44
GTF3C1-202ENST00000561623 PDILTQ8N807 584 aa12.33□□□□□ -0.44
GTF3C1-202ENST00000561623 GRM1Q13255 1194 aa12.32□□□□□ -0.44
GTF3C1-202ENST00000561623 TRIM29Q14134 588 aa12.32□□□□□ -0.44
GTF3C1-202ENST00000561623 C9orf78Q9NZ63 289 aaPredicted RBP12.32□□□□□ -0.44
GTF3C1-202ENST00000561623 TOP2AP11388 1531 aaKnown RBP12.32□□□□□ -0.44
GTF3C1-202ENST00000561623 ESPNB1AK53 854 aa12.32□□□□□ -0.44
GTF3C1-202ENST00000561623 CALRP27797 417 aaKnown RBP12.32□□□□□ -0.44
GTF3C1-202ENST00000561623 MAPK8IP2Q13387 824 aaPredicted RBP12.31□□□□□ -0.44
GTF3C1-202ENST00000561623 RUFY1Q96T51 708 aa12.31□□□□□ -0.44
GTF3C1-202ENST00000561623 C1orf115Q9H7X2 142 aa12.31□□□□□ -0.44
GTF3C1-202ENST00000561623 WDR70Q9NW82 654 aa12.31□□□□□ -0.44
GTF3C1-202ENST00000561623 TTLL5Q6EMB2 1281 aa12.31□□□□□ -0.44
GTF3C1-202ENST00000561623 COG3Q96JB2 828 aa12.31□□□□□ -0.44
GTF3C1-202ENST00000561623 FKBP5Q13451 457 aaPredicted RBP12.31□□□□□ -0.44
GTF3C1-202ENST00000561623 MINK1Q8N4C8 1332 aaPredicted RBP12.31□□□□□ -0.44
GTF3C1-202ENST00000561623 EVC2Q86UK5 1308 aa12.31□□□□□ -0.44
GTF3C1-202ENST00000561623 NEK4P51957 841 aa12.31□□□□□ -0.44
GTF3C1-202ENST00000561623 RNF20Q5VTR2 975 aa12.31□□□□□ -0.44
GTF3C1-202ENST00000561623 MBD3O95983 291 aa12.31□□□□□ -0.44
GTF3C1-202ENST00000561623 SYNE3Q6ZMZ3 975 aa12.31□□□□□ -0.44
GTF3C1-202ENST00000561623 CHMP4CQ96CF2 233 aa12.31□□□□□ -0.44
GTF3C1-202ENST00000561623 HMGN5P82970 282 aaKnown RBP12.3□□□□□ -0.44
GTF3C1-202ENST00000561623 SKAP1Q86WV1 359 aa12.3□□□□□ -0.44
GTF3C1-202ENST00000561623 AK7Q96M32 723 aa12.3□□□□□ -0.44
GTF3C1-202ENST00000561623 FIBPO43427 364 aa12.3□□□□□ -0.44
GTF3C1-202ENST00000561623 HMOX1P09601 288 aa12.3□□□□□ -0.44
GTF3C1-202ENST00000561623 ROCK1Q13464 1354 aa12.3□□□□□ -0.44
GTF3C1-202ENST00000561623 C16orf71Q8IYS4 520 aaPredicted RBP12.3□□□□□ -0.44
GTF3C1-202ENST00000561623 CWC15Q9P013 229 aaKnown RBP12.3□□□□□ -0.44
GTF3C1-202ENST00000561623 PRDM10Q9NQV6 1147 aa12.3□□□□□ -0.44
GTF3C1-202ENST00000561623 TCEAL9Q9UHQ7 104 aa12.3□□□□□ -0.44
GTF3C1-202ENST00000561623 SKIDA1Q1XH10 827 aa12.29□□□□□ -0.44
GTF3C1-202ENST00000561623 ANKRD20A12PQ8NF67 263 aa12.29□□□□□ -0.44
GTF3C1-202ENST00000561623 ACBD3Q9H3P7 528 aa12.29□□□□□ -0.44
GTF3C1-202ENST00000561623 CPLX2Q6PUV4 134 aaKnown RBP12.29□□□□□ -0.44
GTF3C1-202ENST00000561623 SMC2O95347 1197 aa12.29□□□□□ -0.44
GTF3C1-202ENST00000561623 PSME1Q06323 249 aa12.29□□□□□ -0.44
GTF3C1-202ENST00000561623 KDM4AO75164 1064 aa12.29□□□□□ -0.44
GTF3C1-202ENST00000561623 APPP05067 770 aa12.29□□□□□ -0.44
GTF3C1-202ENST00000561623 MCM4P33991 863 aa12.29□□□□□ -0.44
GTF3C1-202ENST00000561623 UACAQ9BZF9 1416 aa12.28□□□□□ -0.44
GTF3C1-202ENST00000561623 LETM1O95202 739 aaPredicted RBP12.28□□□□□ -0.44
GTF3C1-202ENST00000561623 AAMPQ13685 434 aa12.28□□□□□ -0.44
GTF3C1-202ENST00000561623 HOOK1Q9UJC3 728 aaKnown RBP12.28□□□□□ -0.44
GTF3C1-202ENST00000561623 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.28□□□□□ -0.44
GTF3C1-202ENST00000561623 NAP1L1P55209 391 aaKnown RBP12.28□□□□□ -0.44
GTF3C1-202ENST00000561623 FMNL2Q96PY5 1086 aa12.28□□□□□ -0.44
GTF3C1-202ENST00000561623 SDF4Q9BRK5 362 aa12.28□□□□□ -0.44
GTF3C1-202ENST00000561623 H0YHG0 523 aa12.27□□□□□ -0.44
GTF3C1-202ENST00000561623 NAT10Q9H0A0 1025 aaKnown RBP12.27□□□□□ -0.44
GTF3C1-202ENST00000561623 SMG6Q86US8 1419 aaKnown RBP12.27□□□□□ -0.45
GTF3C1-202ENST00000561623 RABEP1Q15276 862 aa12.27□□□□□ -0.45
GTF3C1-202ENST00000561623 NFXL1Q6ZNB6 911 aa12.27□□□□□ -0.45
GTF3C1-202ENST00000561623 G3BP1Q13283 466 aaKnown RBP eCLIP12.26□□□□□ -0.459e-7■■■□□ 15
GTF3C1-202ENST00000561623 TCP11L2Q8N4U5 519 aa12.26□□□□□ -0.45
GTF3C1-202ENST00000561623 K7ELQ4 463 aaPredicted RBP12.26□□□□□ -0.45
GTF3C1-202ENST00000561623 GNAI1P63096 354 aa12.25□□□□□ -0.45
GTF3C1-202ENST00000561623 CEBPZQ03701 1054 aaKnown RBP12.25□□□□□ -0.45
GTF3C1-202ENST00000561623 PPP2R1AP30153 589 aa12.25□□□□□ -0.45
GTF3C1-202ENST00000561623 RSPH4AQ5TD94 716 aa12.25□□□□□ -0.45
GTF3C1-202ENST00000561623 CAGE1Q8TC20 777 aa12.25□□□□□ -0.45
GTF3C1-202ENST00000561623 ERICH4A6NGS2 130 aa12.25□□□□□ -0.45
GTF3C1-202ENST00000561623 OLFM4Q6UX06 510 aa12.25□□□□□ -0.45
GTF3C1-202ENST00000561623 TEFQ10587 303 aa12.25□□□□□ -0.45
GTF3C1-202ENST00000561623 FGD6Q6ZV73 1430 aa12.25□□□□□ -0.45
GTF3C1-202ENST00000561623 EXOSC9Q06265 439 aaKnown RBP12.25□□□□□ -0.45
GTF3C1-202ENST00000561623 NEXNQ0ZGT2 675 aa12.24□□□□□ -0.45
GTF3C1-202ENST00000561623 C1orf141Q5JVX7 400 aa12.24□□□□□ -0.45
GTF3C1-202ENST00000561623 NOB1Q9ULX3 412 aaKnown RBP12.24□□□□□ -0.45
GTF3C1-202ENST00000561623 LEKR1Q6ZMV7 388 aa12.24□□□□□ -0.45
GTF3C1-202ENST00000561623 CCDC112Q8NEF3 446 aa12.24□□□□□ -0.45
GTF3C1-202ENST00000561623 GGNBP2Q9H3C7 697 aa12.24□□□□□ -0.45
GTF3C1-202ENST00000561623 TSPYL4Q9UJ04 414 aa12.24□□□□□ -0.45
GTF3C1-202ENST00000561623 ZNF644Q9H582 1327 aaPredicted RBP12.24□□□□□ -0.45
GTF3C1-202ENST00000561623 KIF21BO75037 1637 aa12.24□□□□□ -0.45
GTF3C1-202ENST00000561623 ERC2O15083 957 aa12.24□□□□□ -0.45
GTF3C1-202ENST00000561623 JPH4Q96JJ6 628 aa12.24□□□□□ -0.45
GTF3C1-202ENST00000561623 TSR2Q969E8 191 aaKnown RBP12.23□□□□□ -0.45
GTF3C1-202ENST00000561623 TRDNQ13061 729 aa12.23□□□□□ -0.45
GTF3C1-202ENST00000561623 PNISRQ8TF01 805 aaKnown RBP12.23□□□□□ -0.45
GTF3C1-202ENST00000561623 STRN4Q9NRL3 753 aa12.23□□□□□ -0.45
GTF3C1-202ENST00000561623 PDE3AQ14432 1141 aa12.23□□□□□ -0.45
GTF3C1-202ENST00000561623 RBM33Q96EV2 1170 aaKnown RBP12.23□□□□□ -0.45
GTF3C1-202ENST00000561623 CBX1P83916 185 aa12.22□□□□□ -0.45
GTF3C1-202ENST00000561623 NOL10Q9BSC4 688 aaKnown RBP12.22□□□□□ -0.45
GTF3C1-202ENST00000561623 KINO60870 393 aaKnown RBP12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms