RNA–Protein interactions for RNA: ENST00000560842.1

PSMA4-221, Transcript of proteasome subunit alpha 4, humanhuman

TSL 1 (best)

Gene PSMA4, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSMA4-221ENST00000560842 MSS51Q4VC12 460 aa11.08□□□□□ -0.64
PSMA4-221ENST00000560842 SULF1Q8IWU6 871 aa11.07□□□□□ -0.64
PSMA4-221ENST00000560842 TESPA1A2RU30 521 aaPredicted RBP11.05□□□□□ -0.64
PSMA4-221ENST00000560842 WNT7AO00755 349 aa11.05□□□□□ -0.64
PSMA4-221ENST00000560842 WIPF1O43516 503 aa11.05□□□□□ -0.64
PSMA4-221ENST00000560842 GPR37O15354 613 aa11.04□□□□□ -0.64
PSMA4-221ENST00000560842 SMPD1P17405 629 aa11.04□□□□□ -0.64
PSMA4-221ENST00000560842 SNIP1Q8TAD8 396 aaKnown RBP11.04□□□□□ -0.64
PSMA4-221ENST00000560842 NLRP7Q8WX94 980 aa11.04□□□□□ -0.64
PSMA4-221ENST00000560842 STK17AQ9UEE5 414 aa11.04□□□□□ -0.64
PSMA4-221ENST00000560842 SMYD5Q6GMV2 418 aa11.03□□□□□ -0.64
PSMA4-221ENST00000560842 RNF19BQ6ZMZ0 732 aa11.03□□□□□ -0.64
PSMA4-221ENST00000560842 GRIPAP1Q4V328 841 aa11.02□□□□□ -0.65
PSMA4-221ENST00000560842 PHOX2BQ99453 314 aa11.02□□□□□ -0.65
PSMA4-221ENST00000560842 ATP13A2Q9NQ11 1180 aa11.01□□□□□ -0.65
PSMA4-221ENST00000560842 MMP16P51512 607 aa11□□□□□ -0.65
PSMA4-221ENST00000560842 INSM1Q01101 510 aaPredicted RBP11□□□□□ -0.65
PSMA4-221ENST00000560842 TRIM32Q13049 653 aa11□□□□□ -0.65
PSMA4-221ENST00000560842 MRGPRX2Q96LB1 330 aa10.99□□□□□ -0.65
PSMA4-221ENST00000560842 SNRPBP14678 240 aaKnown RBP10.98□□□□□ -0.65
PSMA4-221ENST00000560842 Q3C1V9 767 aa10.98□□□□□ -0.65
PSMA4-221ENST00000560842 J3QL48 77 aa10.97□□□□□ -0.65
PSMA4-221ENST00000560842 TRIM47Q96LD4 638 aa10.97□□□□□ -0.65
PSMA4-221ENST00000560842 SENP2Q9HC62 589 aa10.97□□□□□ -0.65
PSMA4-221ENST00000560842 TERTO14746 1132 aaKnown RBP10.96□□□□□ -0.65
PSMA4-221ENST00000560842 LCE2CQ5TA81 110 aa10.95□□□□□ -0.66
PSMA4-221ENST00000560842 REPIN1Q9BWE0 567 aaKnown RBP10.94□□□□□ -0.66
PSMA4-221ENST00000560842 DXOO77932 396 aaKnown RBP10.93□□□□□ -0.66
PSMA4-221ENST00000560842 HPS1Q92902 700 aa10.93□□□□□ -0.66
PSMA4-221ENST00000560842 KIFC2Q96AC6 838 aa10.92□□□□□ -0.66
PSMA4-221ENST00000560842 BCANQ96GW7 911 aa10.92□□□□□ -0.66
PSMA4-221ENST00000560842 USB1Q9BQ65 265 aaKnown RBP10.92□□□□□ -0.66
PSMA4-221ENST00000560842 CD46P15529 392 aa10.91□□□□□ -0.66
PSMA4-221ENST00000560842 RC3H1Q5TC82 1133 aaKnown RBP10.89□□□□□ -0.67
PSMA4-221ENST00000560842 KDM4AO75164 1064 aa10.88□□□□□ -0.67
PSMA4-221ENST00000560842 WNT7BP56706 349 aa10.87□□□□□ -0.67
PSMA4-221ENST00000560842 SKOR1P84550 965 aa10.87□□□□□ -0.67
PSMA4-221ENST00000560842 CCDC24Q8N4L8 307 aa10.86□□□□□ -0.67
PSMA4-221ENST00000560842 GPIHBP1Q8IV16 184 aa10.85□□□□□ -0.67
PSMA4-221ENST00000560842 USP46P62068 366 aa10.84□□□□□ -0.67
PSMA4-221ENST00000560842 SLC16A10Q8TF71 515 aa10.82□□□□□ -0.68
PSMA4-221ENST00000560842 HLA-CQ95604 372 aa10.82□□□□□ -0.68
PSMA4-221ENST00000560842 ALDH1A1P00352 501 aa10.81□□□□□ -0.68
PSMA4-221ENST00000560842 NXF1Q9UBU9 619 aaKnown RBP10.8□□□□□ -0.68
PSMA4-221ENST00000560842 SIAH2O43255 324 aa10.79□□□□□ -0.68
PSMA4-221ENST00000560842 HOXA2O43364 376 aa10.79□□□□□ -0.68
PSMA4-221ENST00000560842 JUNDP17535 347 aa10.78□□□□□ -0.68
PSMA4-221ENST00000560842 MAP2K5Q13163 448 aa10.78□□□□□ -0.68
PSMA4-221ENST00000560842 FAM181BA6NEQ2 426 aa10.77□□□□□ -0.69
PSMA4-221ENST00000560842 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.76□□□□□ -0.69
PSMA4-221ENST00000560842 NPAS3Q8IXF0 933 aa10.76□□□□□ -0.69
PSMA4-221ENST00000560842 IRF6O14896 467 aa10.75□□□□□ -0.69
PSMA4-221ENST00000560842 MDM2Q00987 491 aaPredicted RBP10.75□□□□□ -0.69
PSMA4-221ENST00000560842 PTCRAQ6ISU1 281 aaPredicted RBP10.75□□□□□ -0.69
PSMA4-221ENST00000560842 TRIM46Q7Z4K8 759 aa10.75□□□□□ -0.69
PSMA4-221ENST00000560842 LORP23490 312 aaPredicted RBP10.74□□□□□ -0.69
PSMA4-221ENST00000560842 GMPRP36959 345 aa10.74□□□□□ -0.69
PSMA4-221ENST00000560842 GUCA2AQ02747 115 aa10.74□□□□□ -0.69
PSMA4-221ENST00000560842 SYMPKQ92797 1274 aaKnown RBP10.74□□□□□ -0.69
PSMA4-221ENST00000560842 CAPN5O15484 640 aaPredicted RBP10.73□□□□□ -0.69
PSMA4-221ENST00000560842 EHBP1Q8NDI1 1231 aa10.73□□□□□ -0.69
PSMA4-221ENST00000560842 IRF7Q92985 503 aa10.73□□□□□ -0.69
PSMA4-221ENST00000560842 NUDT12Q9BQG2 462 aa10.73□□□□□ -0.69
PSMA4-221ENST00000560842 BMP1P13497 986 aa10.72□□□□□ -0.69
PSMA4-221ENST00000560842 ZSCAN1Q8NBB4 408 aa10.72□□□□□ -0.69
PSMA4-221ENST00000560842 WASF2Q9Y6W5 498 aa10.72□□□□□ -0.69
PSMA4-221ENST00000560842 RETREG3Q86VR2 466 aa10.71□□□□□ -0.69
PSMA4-221ENST00000560842 MINK1Q8N4C8 1332 aaPredicted RBP10.7□□□□□ -0.7
PSMA4-221ENST00000560842 TULP1O00294 542 aaPredicted RBP10.7□□□□□ -0.7
PSMA4-221ENST00000560842 SH3BP2P78314 561 aa10.69□□□□□ -0.7
PSMA4-221ENST00000560842 H3BM21 787 aa10.68□□□□□ -0.7
PSMA4-221ENST00000560842 GPCPD1Q9NPB8 672 aa10.67□□□□□ -0.7
PSMA4-221ENST00000560842 FAM217BQ9NTX9 383 aaPredicted RBP10.67□□□□□ -0.7
PSMA4-221ENST00000560842 VEGFBP49765 207 aa10.66□□□□□ -0.7
PSMA4-221ENST00000560842 NUTM1Q86Y26 1132 aa10.66□□□□□ -0.7
PSMA4-221ENST00000560842 CLCN1P35523 988 aa10.65□□□□□ -0.7
PSMA4-221ENST00000560842 ZFP42Q96MM3 310 aa10.65□□□□□ -0.7
PSMA4-221ENST00000560842 ERBB4Q15303 1308 aa10.64□□□□□ -0.71
PSMA4-221ENST00000560842 CCNYL3P0C7X3 344 aa10.64□□□□□ -0.71
PSMA4-221ENST00000560842 FDX1P10109 184 aa10.63□□□□□ -0.71
PSMA4-221ENST00000560842 MS4A1P11836 297 aa10.63□□□□□ -0.71
PSMA4-221ENST00000560842 CCDC102AQ96A19 550 aa10.63□□□□□ -0.71
PSMA4-221ENST00000560842 EVA1BQ9NVM1 165 aa10.63□□□□□ -0.71
PSMA4-221ENST00000560842 PCDHGC3Q9UN70 934 aa10.63□□□□□ -0.71
PSMA4-221ENST00000560842 UNC93B1Q9H1C4 597 aa10.62□□□□□ -0.71
PSMA4-221ENST00000560842 C6orf229H3BNL8 230 aa10.61□□□□□ -0.71
PSMA4-221ENST00000560842 PTPRNQ16849 979 aa10.61□□□□□ -0.71
PSMA4-221ENST00000560842 MPNDQ8N594 471 aa10.61□□□□□ -0.71
PSMA4-221ENST00000560842 PLEKHG3A1L390 1219 aa10.6□□□□□ -0.71
PSMA4-221ENST00000560842 BAP1Q92560 729 aa10.6□□□□□ -0.71
PSMA4-221ENST00000560842 TLL2Q9Y6L7 1015 aa10.59□□□□□ -0.71
PSMA4-221ENST00000560842 VARSP26640 1264 aaKnown RBP10.58□□□□□ -0.72
PSMA4-221ENST00000560842 KCNH2Q12809 1159 aa10.58□□□□□ -0.72
PSMA4-221ENST00000560842 MRPL14Q6P1L8 145 aaKnown RBP10.58□□□□□ -0.72
PSMA4-221ENST00000560842 NNTQ13423 1086 aa10.57□□□□□ -0.72
PSMA4-221ENST00000560842 LINC01559Q495D7 138 aa10.57□□□□□ -0.72
PSMA4-221ENST00000560842 ZC3H15Q8WU90 426 aaKnown RBP10.57□□□□□ -0.72
PSMA4-221ENST00000560842 LOC100996750A0A140TA64 210 aa10.56□□□□□ -0.72
PSMA4-221ENST00000560842 KRI1Q8N9T8 703 aaKnown RBP10.56□□□□□ -0.72
PSMA4-221ENST00000560842 ZNF511Q8NB15 262 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms