RNA–Protein interactions for RNA: ENST00000560615.5

TPM1-224, Transcript of tropomyosin 1, humanhuman

TSL 3

Gene TPM1, Length 570 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-224ENST00000560615 LRPPRCP42704 1394 aaKnown RBP27.4■■□□□ 1.98
TPM1-224ENST00000560615 NGLY1Q96IV0 654 aa27.4■■□□□ 1.98
TPM1-224ENST00000560615 ABCC11Q96J66 1382 aa27.38■■□□□ 1.97
TPM1-224ENST00000560615 QTRT2Q9H974 415 aaKnown RBP27.38■■□□□ 1.97
TPM1-224ENST00000560615 CDK12Q9NYV4 1490 aaPredicted RBP27.38■■□□□ 1.97
TPM1-224ENST00000560615 ADAMTS2O95450 1211 aa27.37■■□□□ 1.97
TPM1-224ENST00000560615 TECPR2O15040 1411 aa27.36■■□□□ 1.97
TPM1-224ENST00000560615 RBM6P78332 1123 aaKnown RBP27.36■■□□□ 1.97
TPM1-224ENST00000560615 WAPLQ7Z5K2 1190 aa27.35■■□□□ 1.97
TPM1-224ENST00000560615 CDC42BPGQ6DT37 1551 aa27.35■■□□□ 1.97
TPM1-224ENST00000560615 TMEM132EQ6IEE7 984 aa27.34■■□□□ 1.97
TPM1-224ENST00000560615 LAMC1P11047 1609 aa27.34■■□□□ 1.97
TPM1-224ENST00000560615 PIK3C2GO75747 1445 aa27.33■■□□□ 1.97
TPM1-224ENST00000560615 SIRT1Q96EB6 747 aa27.33■■□□□ 1.97
TPM1-224ENST00000560615 UPF1Q92900 1129 aaKnown RBP eCLIP27.32■■□□□ 1.96
TPM1-224ENST00000560615 FOXO3O43524 673 aa27.3■■□□□ 1.96
TPM1-224ENST00000560615 C14orf93Q9H972 538 aaKnown RBP27.3■■□□□ 1.96
TPM1-224ENST00000560615 DHX57Q6P158 1386 aaKnown RBP27.3■■□□□ 1.96
TPM1-224ENST00000560615 USP21Q9UK80 565 aa27.29■■□□□ 1.96
TPM1-224ENST00000560615 YTHDC2Q9H6S0 1430 aaKnown RBP27.29■■□□□ 1.96
TPM1-224ENST00000560615 NUTM2FA1L443 756 aa27.27■■□□□ 1.96
TPM1-224ENST00000560615 TRPC5Q9UL62 973 aaPredicted RBP27.27■■□□□ 1.96
TPM1-224ENST00000560615 RAB3GAP2Q9H2M9 1393 aa27.25■■□□□ 1.95
TPM1-224ENST00000560615 IFT172Q9UG01 1749 aa27.25■■□□□ 1.95
TPM1-224ENST00000560615 FNBP4Q8N3X1 1017 aaPredicted RBP27.24■■□□□ 1.95
TPM1-224ENST00000560615 MYOM2P54296 1465 aa27.23■■□□□ 1.95
TPM1-224ENST00000560615 PLEKHH1Q9ULM0 1364 aa27.22■■□□□ 1.95
TPM1-224ENST00000560615 CFAP70Q5T0N1 1121 aa27.22■■□□□ 1.95
TPM1-224ENST00000560615 KNDC1Q76NI1 1749 aa27.21■■□□□ 1.95
TPM1-224ENST00000560615 XPCQ01831 940 aaPredicted RBP27.21■■□□□ 1.95
TPM1-224ENST00000560615 PXDNQ92626 1479 aa27.19■■□□□ 1.94
TPM1-224ENST00000560615 PSME1Q06323 249 aa27.19■■□□□ 1.94
TPM1-224ENST00000560615 STAC3Q96MF2 364 aa27.19■■□□□ 1.94
TPM1-224ENST00000560615 POGKQ9P215 609 aa27.19■■□□□ 1.94
TPM1-224ENST00000560615 NRXN1Q9ULB1 1477 aa27.19■■□□□ 1.94
TPM1-224ENST00000560615 RGS12O14924 1447 aa27.18■■□□□ 1.94
TPM1-224ENST00000560615 COL22A1Q8NFW1 1626 aaPredicted RBP27.18■■□□□ 1.94
TPM1-224ENST00000560615 KRT28Q7Z3Y7 464 aa27.17■■□□□ 1.94
TPM1-224ENST00000560615 HRCP23327 699 aa27.16■■□□□ 1.94
TPM1-224ENST00000560615 PRAM1Q96QH2 718 aa27.16■■□□□ 1.94
TPM1-224ENST00000560615 PHF8Q9UPP1 1060 aa27.15■■□□□ 1.94
TPM1-224ENST00000560615 SPATA31A3Q5VYP0 1347 aa27.15■■□□□ 1.94
TPM1-224ENST00000560615 HAP1P54257 671 aaPredicted RBP27.14■■□□□ 1.94
TPM1-224ENST00000560615 ATAD2Q6PL18 1390 aa27.12■■□□□ 1.93
TPM1-224ENST00000560615 KIF1AQ12756 1690 aa27.12■■□□□ 1.93
TPM1-224ENST00000560615 SAFB2Q14151 953 aaKnown RBP eCLIP27.12■■□□□ 1.93
TPM1-224ENST00000560615 FMN2Q9NZ56 1722 aa27.11■■□□□ 1.93
TPM1-224ENST00000560615 ATRNO75882 1429 aa27.1■■□□□ 1.93
TPM1-224ENST00000560615 DCAF11Q8TEB1 546 aa27.1■■□□□ 1.93
TPM1-224ENST00000560615 KDM2AQ9Y2K7 1162 aa27.09■■□□□ 1.93
TPM1-224ENST00000560615 DLC1Q96QB1 1528 aa27.08■■□□□ 1.93
TPM1-224ENST00000560615 EIF3AQ14152 1382 aaKnown RBP27.07■■□□□ 1.92
TPM1-224ENST00000560615 GJD4Q96KN9 370 aaPredicted RBP27.06■■□□□ 1.92
TPM1-224ENST00000560615 TRAK1Q9UPV9 953 aa27.06■■□□□ 1.92
TPM1-224ENST00000560615 LMOD2Q6P5Q4 547 aa27.05■■□□□ 1.92
TPM1-224ENST00000560615 UNC5CLQ8IV45 518 aa27.05■■□□□ 1.92
TPM1-224ENST00000560615 ANKARQ7Z5J8 1434 aa27.05■■□□□ 1.92
TPM1-224ENST00000560615 SBNO1A3KN83 1393 aa27.04■■□□□ 1.92
TPM1-224ENST00000560615 ARHGEF10O15013 1369 aa27.04■■□□□ 1.92
TPM1-224ENST00000560615 TNS3Q68CZ2 1445 aa27.04■■□□□ 1.92
TPM1-224ENST00000560615 BCL9LQ86UU0 1499 aa27.04■■□□□ 1.92
TPM1-224ENST00000560615 CCDC125Q86Z20 511 aa27■■□□□ 1.91
TPM1-224ENST00000560615 PMFBP1Q8TBY8 1022 aa27■■□□□ 1.91
TPM1-224ENST00000560615 GPRASP1Q5JY77 1395 aa26.99■■□□□ 1.91
TPM1-224ENST00000560615 ADGRB1O14514 1584 aa26.97■■□□□ 1.91
TPM1-224ENST00000560615 MINK1Q8N4C8 1332 aaPredicted RBP26.97■■□□□ 1.91
TPM1-224ENST00000560615 HIRIP3Q9BW71 556 aaPredicted RBP26.97■■□□□ 1.91
TPM1-224ENST00000560615 SLIT2O94813 1529 aa26.96■■□□□ 1.91
TPM1-224ENST00000560615 WASLO00401 505 aaPredicted RBP26.96■■□□□ 1.91
TPM1-224ENST00000560615 MARF1Q9Y4F3 1742 aaKnown RBP26.96■■□□□ 1.91
TPM1-224ENST00000560615 PLEKHG5O94827 1062 aa26.95■■□□□ 1.9
TPM1-224ENST00000560615 ADGRB2O60241 1585 aa26.95■■□□□ 1.9
TPM1-224ENST00000560615 CABLES1Q8TDN4 633 aa26.94■■□□□ 1.9
TPM1-224ENST00000560615 USP32Q8NFA0 1604 aa26.92■■□□□ 1.9
TPM1-224ENST00000560615 NGDNQ8NEJ9 315 aaKnown RBP26.92■■□□□ 1.9
TPM1-224ENST00000560615 CCDC9Q9Y3X0 531 aaKnown RBP26.92■■□□□ 1.9
TPM1-224ENST00000560615 VPS72Q15906 364 aa26.91■■□□□ 1.9
TPM1-224ENST00000560615 RALGAPBQ86X10 1494 aa26.9■■□□□ 1.9
TPM1-224ENST00000560615 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.9■■□□□ 1.9
TPM1-224ENST00000560615 TULP4Q9NRJ4 1543 aa26.89■■□□□ 1.89
TPM1-224ENST00000560615 RGPD8O14715 1765 aaPredicted RBP26.88■■□□□ 1.89
TPM1-224ENST00000560615 ZRANB1Q9UGI0 708 aa26.86■■□□□ 1.89
TPM1-224ENST00000560615 PRR36Q9H6K5 1346 aa26.86■■□□□ 1.89
TPM1-224ENST00000560615 PAK3O75914 559 aaPredicted RBP26.85■■□□□ 1.89
TPM1-224ENST00000560615 FAM83GA6ND36 823 aa26.84■■□□□ 1.89
TPM1-224ENST00000560615 SF3B2Q13435 895 aaKnown RBP26.84■■□□□ 1.89
TPM1-224ENST00000560615 SEPT12Q8IYM1 358 aa26.84■■□□□ 1.89
TPM1-224ENST00000560615 NUDT16Q96DE0 195 aaKnown RBP26.82■■□□□ 1.88
TPM1-224ENST00000560615 ONECUT3O60422 494 aaPredicted RBP26.81■■□□□ 1.88
TPM1-224ENST00000560615 GLI3P10071 1580 aa26.8■■□□□ 1.88
TPM1-224ENST00000560615 A0A0G2JS52 829 aa26.8■■□□□ 1.88
TPM1-224ENST00000560615 MYT1Q01538 1121 aa26.8■■□□□ 1.88
TPM1-224ENST00000560615 CDK19Q9BWU1 502 aa26.79■■□□□ 1.88
TPM1-224ENST00000560615 BTG4Q9NY30 223 aa26.79■■□□□ 1.88
TPM1-224ENST00000560615 BLMP54132 1417 aaPredicted RBP26.79■■□□□ 1.88
TPM1-224ENST00000560615 NWD2Q9ULI1 1742 aa26.78■■□□□ 1.88
TPM1-224ENST00000560615 KRT27Q7Z3Y8 459 aa26.77■■□□□ 1.88
TPM1-224ENST00000560615 CCDC61Q9Y6R9 512 aa26.76■■□□□ 1.87
TPM1-224ENST00000560615 PRDM11Q9NQV5 511 aa26.75■■□□□ 1.87
TPM1-224ENST00000560615 PLCH1Q4KWH8 1693 aa26.73■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms