RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 C14orf93Q9H972 538 aaKnown RBP18.41■□□□□ 0.54
SNX1-209ENST00000559961 LRP6O75581 1613 aa18.41■□□□□ 0.54
SNX1-209ENST00000559961 SHPRHQ149N8 1683 aa18.41■□□□□ 0.54
SNX1-209ENST00000559961 PPLO60437 1756 aa18.4■□□□□ 0.54
SNX1-209ENST00000559961 NUTM2FA1L443 756 aa18.4■□□□□ 0.54
SNX1-209ENST00000559961 SIRT1Q96EB6 747 aa18.4■□□□□ 0.54
SNX1-209ENST00000559961 POGKQ9P215 609 aa18.4■□□□□ 0.54
SNX1-209ENST00000559961 SOS2Q07890 1332 aaPredicted RBP18.4■□□□□ 0.54
SNX1-209ENST00000559961 PNPLA6Q8IY17 1366 aa18.4■□□□□ 0.54
SNX1-209ENST00000559961 HRCP23327 699 aa18.39■□□□□ 0.53
SNX1-209ENST00000559961 QTRT2Q9H974 415 aaKnown RBP18.39■□□□□ 0.53
SNX1-209ENST00000559961 STAC3Q96MF2 364 aa18.38■□□□□ 0.53
SNX1-209ENST00000559961 PIK3C2GO75747 1445 aa18.38■□□□□ 0.53
SNX1-209ENST00000559961 NALCNQ8IZF0 1738 aa18.37■□□□□ 0.53
SNX1-209ENST00000559961 FOXO3O43524 673 aa18.37■□□□□ 0.53
SNX1-209ENST00000559961 CFAP70Q5T0N1 1121 aa18.37■□□□□ 0.53
SNX1-209ENST00000559961 YTHDC2Q9H6S0 1430 aaKnown RBP18.37■□□□□ 0.53
SNX1-209ENST00000559961 KDM2AQ9Y2K7 1162 aa18.36■□□□□ 0.53
SNX1-209ENST00000559961 TECPR2O15040 1411 aa18.35■□□□□ 0.53
SNX1-209ENST00000559961 RBM6P78332 1123 aaKnown RBP18.35■□□□□ 0.53
SNX1-209ENST00000559961 PSME1Q06323 249 aa18.35■□□□□ 0.53
SNX1-209ENST00000559961 NHSL1Q5SYE7 1610 aa18.34■□□□□ 0.53
SNX1-209ENST00000559961 HAP1P54257 671 aaPredicted RBP18.34■□□□□ 0.53
SNX1-209ENST00000559961 DCAF11Q8TEB1 546 aa18.34■□□□□ 0.53
SNX1-209ENST00000559961 USP21Q9UK80 565 aa18.34■□□□□ 0.53
SNX1-209ENST00000559961 SETD1AO15047 1707 aaKnown RBP18.33■□□□□ 0.52
SNX1-209ENST00000559961 SAFB2Q14151 953 aaKnown RBP eCLIP18.33■□□□□ 0.52
SNX1-209ENST00000559961 PRAM1Q96QH2 718 aa18.33■□□□□ 0.52
SNX1-209ENST00000559961 XPCQ01831 940 aaPredicted RBP18.32■□□□□ 0.52
SNX1-209ENST00000559961 CDC42BPGQ6DT37 1551 aa18.31■□□□□ 0.52
SNX1-209ENST00000559961 TRPC5Q9UL62 973 aaPredicted RBP18.31■□□□□ 0.52
SNX1-209ENST00000559961 PLEKHH1Q9ULM0 1364 aa18.3■□□□□ 0.52
SNX1-209ENST00000559961 KRT28Q7Z3Y7 464 aa18.3■□□□□ 0.52
SNX1-209ENST00000559961 PHF8Q9UPP1 1060 aa18.3■□□□□ 0.52
SNX1-209ENST00000559961 MYOM2P54296 1465 aa18.3■□□□□ 0.52
SNX1-209ENST00000559961 TRAK1Q9UPV9 953 aa18.29■□□□□ 0.52
SNX1-209ENST00000559961 LMOD2Q6P5Q4 547 aa18.28■□□□□ 0.52
SNX1-209ENST00000559961 CDK12Q9NYV4 1490 aaPredicted RBP18.27■□□□□ 0.52
SNX1-209ENST00000559961 FNBP4Q8N3X1 1017 aaPredicted RBP18.26■□□□□ 0.51
SNX1-209ENST00000559961 UPF1Q92900 1129 aaKnown RBP eCLIP18.26■□□□□ 0.51
SNX1-209ENST00000559961 NRXN1Q9ULB1 1477 aa18.26■□□□□ 0.51
SNX1-209ENST00000559961 EIF3AQ14152 1382 aaKnown RBP18.25■□□□□ 0.51
SNX1-209ENST00000559961 IFT172Q9UG01 1749 aa18.24■□□□□ 0.51
SNX1-209ENST00000559961 SPATA31A3Q5VYP0 1347 aa18.23■□□□□ 0.51
SNX1-209ENST00000559961 LAMC1P11047 1609 aa18.23■□□□□ 0.51
SNX1-209ENST00000559961 HIRIP3Q9BW71 556 aaPredicted RBP18.22■□□□□ 0.51
SNX1-209ENST00000559961 PXDNQ92626 1479 aa18.21■□□□□ 0.51
SNX1-209ENST00000559961 KNDC1Q76NI1 1749 aa18.21■□□□□ 0.51
SNX1-209ENST00000559961 PLEKHG5O94827 1062 aa18.21■□□□□ 0.51
SNX1-209ENST00000559961 PMFBP1Q8TBY8 1022 aa18.21■□□□□ 0.51
SNX1-209ENST00000559961 MINK1Q8N4C8 1332 aaPredicted RBP18.21■□□□□ 0.51
SNX1-209ENST00000559961 GPRASP1Q5JY77 1395 aa18.2■□□□□ 0.5
SNX1-209ENST00000559961 NGDNQ8NEJ9 315 aaKnown RBP18.19■□□□□ 0.5
SNX1-209ENST00000559961 ARHGEF10O15013 1369 aa18.18■□□□□ 0.5
SNX1-209ENST00000559961 WASLO00401 505 aaPredicted RBP18.18■□□□□ 0.5
SNX1-209ENST00000559961 UNC5CLQ8IV45 518 aa18.18■□□□□ 0.5
SNX1-209ENST00000559961 DLC1Q96QB1 1528 aa18.18■□□□□ 0.5
SNX1-209ENST00000559961 ATAD2Q6PL18 1390 aa18.17■□□□□ 0.5
SNX1-209ENST00000559961 ANKARQ7Z5J8 1434 aa18.17■□□□□ 0.5
SNX1-209ENST00000559961 CCDC9Q9Y3X0 531 aaKnown RBP18.17■□□□□ 0.5
SNX1-209ENST00000559961 KIF1AQ12756 1690 aa18.17■□□□□ 0.5
SNX1-209ENST00000559961 SBNO1A3KN83 1393 aa18.17■□□□□ 0.5
SNX1-209ENST00000559961 GJD4Q96KN9 370 aaPredicted RBP18.16■□□□□ 0.5
SNX1-209ENST00000559961 RGS12O14924 1447 aa18.15■□□□□ 0.5
SNX1-209ENST00000559961 TNS3Q68CZ2 1445 aa18.15■□□□□ 0.5
SNX1-209ENST00000559961 FMN2Q9NZ56 1722 aa18.15■□□□□ 0.5
SNX1-209ENST00000559961 PAK3O75914 559 aaPredicted RBP18.15■□□□□ 0.5
SNX1-209ENST00000559961 COL22A1Q8NFW1 1626 aaPredicted RBP18.15■□□□□ 0.5
SNX1-209ENST00000559961 ATRNO75882 1429 aa18.14■□□□□ 0.49
SNX1-209ENST00000559961 CABLES1Q8TDN4 633 aa18.13■□□□□ 0.49
SNX1-209ENST00000559961 CCDC125Q86Z20 511 aa18.11■□□□□ 0.49
SNX1-209ENST00000559961 ADGRB1O14514 1584 aa18.1■□□□□ 0.49
SNX1-209ENST00000559961 BCL9LQ86UU0 1499 aa18.1■□□□□ 0.49
SNX1-209ENST00000559961 NUDT16Q96DE0 195 aaKnown RBP18.1■□□□□ 0.49
SNX1-209ENST00000559961 A0A0G2JS52 829 aa18.09■□□□□ 0.49
SNX1-209ENST00000559961 MYT1Q01538 1121 aa18.09■□□□□ 0.49
SNX1-209ENST00000559961 CDK19Q9BWU1 502 aa18.09■□□□□ 0.49
SNX1-209ENST00000559961 SF3B2Q13435 895 aaKnown RBP18.07■□□□□ 0.48
SNX1-209ENST00000559961 VPS72Q15906 364 aa18.07■□□□□ 0.48
SNX1-209ENST00000559961 SRPK2P78362 688 aaKnown RBP18.06■□□□□ 0.48
SNX1-209ENST00000559961 CCDC61Q9Y6R9 512 aa18.06■□□□□ 0.48
SNX1-209ENST00000559961 TULP4Q9NRJ4 1543 aa18.06■□□□□ 0.48
SNX1-209ENST00000559961 ADGRB2O60241 1585 aa18.05■□□□□ 0.48
SNX1-209ENST00000559961 PRR36Q9H6K5 1346 aa18.05■□□□□ 0.48
SNX1-209ENST00000559961 SLIT2O94813 1529 aa18.04■□□□□ 0.48
SNX1-209ENST00000559961 FAM83GA6ND36 823 aa18.04■□□□□ 0.48
SNX1-209ENST00000559961 NEUROD1Q13562 356 aa18.03■□□□□ 0.48
SNX1-209ENST00000559961 SEPT12Q8IYM1 358 aa18.03■□□□□ 0.48
SNX1-209ENST00000559961 PRDM11Q9NQV5 511 aa18.03■□□□□ 0.48
SNX1-209ENST00000559961 BTG4Q9NY30 223 aa18.03■□□□□ 0.48
SNX1-209ENST00000559961 ZRANB1Q9UGI0 708 aa18.03■□□□□ 0.48
SNX1-209ENST00000559961 CENPJQ9HC77 1338 aaPredicted RBP18.02■□□□□ 0.48
SNX1-209ENST00000559961 NBPF1Q3BBV0 1214 aa18.02■□□□□ 0.48
SNX1-209ENST00000559961 RALGAPBQ86X10 1494 aa18.01■□□□□ 0.47
SNX1-209ENST00000559961 USP32Q8NFA0 1604 aa18.01■□□□□ 0.47
SNX1-209ENST00000559961 NBPF8Q3BBV2 869 aa18■□□□□ 0.47
SNX1-209ENST00000559961 L3MBTL2Q969R5 705 aa18■□□□□ 0.47
SNX1-209ENST00000559961 ACEP12821 1306 aa17.99■□□□□ 0.47
SNX1-209ENST00000559961 KRT27Q7Z3Y8 459 aa17.99■□□□□ 0.47
SNX1-209ENST00000559961 ABTB2Q8N961 1025 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms