RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 NKTRP30414 1462 aaKnown RBP24.38■■□□□ 1.49
SNX1-208ENST00000559844 EIF3AQ14152 1382 aaKnown RBP24.36■■□□□ 1.49
SNX1-208ENST00000559844 PRAM1Q96QH2 718 aa24.34■■□□□ 1.49
SNX1-208ENST00000559844 FAM135BQ49AJ0 1406 aa24.34■■□□□ 1.49
SNX1-208ENST00000559844 QRICH2Q9H0J4 1663 aa24.34■■□□□ 1.49
SNX1-208ENST00000559844 WAPLQ7Z5K2 1190 aa24.34■■□□□ 1.49
SNX1-208ENST00000559844 POGKQ9P215 609 aa24.33■■□□□ 1.49
SNX1-208ENST00000559844 PLEKHH1Q9ULM0 1364 aa24.33■■□□□ 1.49
SNX1-208ENST00000559844 SAFB2Q14151 953 aaKnown RBP eCLIP24.33■■□□□ 1.48
SNX1-208ENST00000559844 SIRT1Q96EB6 747 aa24.31■■□□□ 1.48
SNX1-208ENST00000559844 CENPJQ9HC77 1338 aaPredicted RBP24.31■■□□□ 1.48
SNX1-208ENST00000559844 PROSER2Q86WR7 435 aaPredicted RBP24.31■■□□□ 1.48
SNX1-208ENST00000559844 RBM33Q96EV2 1170 aaKnown RBP24.31■■□□□ 1.48
SNX1-208ENST00000559844 LTBP4Q8N2S1 1624 aa24.3■■□□□ 1.48
SNX1-208ENST00000559844 XIRP1Q702N8 1843 aaKnown RBP24.3■■□□□ 1.48
SNX1-208ENST00000559844 TESK2Q96S53 571 aa24.28■■□□□ 1.48
SNX1-208ENST00000559844 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.28■■□□□ 1.48
SNX1-208ENST00000559844 LRRC7Q96NW7 1537 aa24.28■■□□□ 1.48
SNX1-208ENST00000559844 NALCNQ8IZF0 1738 aa24.27■■□□□ 1.48
SNX1-208ENST00000559844 TMF1P82094 1093 aa24.27■■□□□ 1.48
SNX1-208ENST00000559844 TMEM94Q12767 1356 aa24.26■■□□□ 1.47
SNX1-208ENST00000559844 KTN1Q86UP2 1357 aaKnown RBP24.26■■□□□ 1.47
SNX1-208ENST00000559844 MRS2Q9HD23 443 aa24.26■■□□□ 1.47
SNX1-208ENST00000559844 C14orf37Q86TY3 774 aa24.24■■□□□ 1.47
SNX1-208ENST00000559844 MINK1Q8N4C8 1332 aaPredicted RBP24.24■■□□□ 1.47
SNX1-208ENST00000559844 CCDC184Q52MB2 194 aa24.22■■□□□ 1.47
SNX1-208ENST00000559844 DISP3Q9P2K9 1392 aa24.21■■□□□ 1.47
SNX1-208ENST00000559844 ADGRL3Q9HAR2 1447 aa24.21■■□□□ 1.47
SNX1-208ENST00000559844 SBNO2Q9Y2G9 1366 aa24.2■■□□□ 1.46
SNX1-208ENST00000559844 ADGRB2O60241 1585 aa24.2■■□□□ 1.46
SNX1-208ENST00000559844 NCOA3Q9Y6Q9 1424 aa24.2■■□□□ 1.46
SNX1-208ENST00000559844 HNRNPUQ00839 825 aaKnown RBP eCLIP24.18■■□□□ 1.46
SNX1-208ENST00000559844 RALBP1Q15311 655 aa24.18■■□□□ 1.46
SNX1-208ENST00000559844 SLC24A1O60721 1099 aa24.17■■□□□ 1.46
SNX1-208ENST00000559844 CDCA8Q53HL2 280 aa24.17■■□□□ 1.46
SNX1-208ENST00000559844 CDC42BPGQ6DT37 1551 aa24.16■■□□□ 1.46
SNX1-208ENST00000559844 TULP4Q9NRJ4 1543 aa24.16■■□□□ 1.46
SNX1-208ENST00000559844 MSH6P52701 1360 aa24.15■■□□□ 1.46
SNX1-208ENST00000559844 C19orf44Q9H6X5 657 aa24.14■■□□□ 1.46
SNX1-208ENST00000559844 EVC2Q86UK5 1308 aa24.13■■□□□ 1.45
SNX1-208ENST00000559844 FAM9BQ8IZU0 186 aa24.12■■□□□ 1.45
SNX1-208ENST00000559844 FMN2Q9NZ56 1722 aa24.12■■□□□ 1.45
SNX1-208ENST00000559844 WASLO00401 505 aaPredicted RBP24.11■■□□□ 1.45
SNX1-208ENST00000559844 MYBBP1AQ9BQG0 1328 aaKnown RBP24.11■■□□□ 1.45
SNX1-208ENST00000559844 CDK19Q9BWU1 502 aa24.1■■□□□ 1.45
SNX1-208ENST00000559844 DCCP43146 1447 aa24.1■■□□□ 1.45
SNX1-208ENST00000559844 PER1O15534 1290 aaPredicted RBP24.09■■□□□ 1.45
SNX1-208ENST00000559844 ATF3P18847 181 aa24.09■■□□□ 1.45
SNX1-208ENST00000559844 SRPK2P78362 688 aaKnown RBP24.09■■□□□ 1.45
SNX1-208ENST00000559844 RGPD8O14715 1765 aaPredicted RBP24.09■■□□□ 1.45
SNX1-208ENST00000559844 BRD4O60885 1362 aaPredicted RBP24.08■■□□□ 1.45
SNX1-208ENST00000559844 NUTM2FA1L443 756 aa24.07■■□□□ 1.44
SNX1-208ENST00000559844 CABP2Q9NPB3 220 aa24.07■■□□□ 1.44
SNX1-208ENST00000559844 PARD3Q8TEW0 1356 aa24.06■■□□□ 1.44
SNX1-208ENST00000559844 CNGB1Q14028 1251 aaPredicted RBP24.06■■□□□ 1.44
SNX1-208ENST00000559844 CADPS2Q86UW7 1296 aa24.06■■□□□ 1.44
SNX1-208ENST00000559844 USP32Q8NFA0 1604 aa24.05■■□□□ 1.44
SNX1-208ENST00000559844 CERKQ8TCT0 537 aa24.05■■□□□ 1.44
SNX1-208ENST00000559844 PANK3Q9H999 370 aa24.05■■□□□ 1.44
SNX1-208ENST00000559844 TMC1Q8TDI8 760 aa24.05■■□□□ 1.44
SNX1-208ENST00000559844 SUPT16HQ9Y5B9 1047 aaKnown RBP24.04■■□□□ 1.44
SNX1-208ENST00000559844 IQSEC2Q5JU85 1478 aa24.04■■□□□ 1.44
SNX1-208ENST00000559844 ZBED9Q6R2W3 1325 aa24.03■■□□□ 1.44
SNX1-208ENST00000559844 ATP7BP35670 1465 aa24.02■■□□□ 1.44
SNX1-208ENST00000559844 ITSN1Q15811 1721 aa24.02■■□□□ 1.44
SNX1-208ENST00000559844 MST1RQ04912 1400 aa24.02■■□□□ 1.44
SNX1-208ENST00000559844 PRR36Q9H6K5 1346 aa24.01■■□□□ 1.43
SNX1-208ENST00000559844 ANKARQ7Z5J8 1434 aa24.01■■□□□ 1.43
SNX1-208ENST00000559844 TOPAZ1Q8N9V7 1692 aa24.01■■□□□ 1.43
SNX1-208ENST00000559844 NUDT16Q96DE0 195 aaKnown RBP24■■□□□ 1.43
SNX1-208ENST00000559844 NLRP13Q86W25 1043 aa24■■□□□ 1.43
SNX1-208ENST00000559844 ATAD2Q6PL18 1390 aa23.99■■□□□ 1.43
SNX1-208ENST00000559844 PNISRQ8TF01 805 aaKnown RBP23.99■■□□□ 1.43
SNX1-208ENST00000559844 C1orf167Q5SNV9 1468 aa23.98■■□□□ 1.43
SNX1-208ENST00000559844 NEFLP07196 543 aa23.98■■□□□ 1.43
SNX1-208ENST00000559844 PUS7Q96PZ0 661 aaKnown RBP23.98■■□□□ 1.43
SNX1-208ENST00000559844 MYOM1P52179 1685 aa23.97■■□□□ 1.43
SNX1-208ENST00000559844 SLAIN2Q9P270 581 aa23.96■■□□□ 1.43
SNX1-208ENST00000559844 CCDC61Q9Y6R9 512 aa23.96■■□□□ 1.43
SNX1-208ENST00000559844 PPIP5K1Q6PFW1 1433 aa23.95■■□□□ 1.42
SNX1-208ENST00000559844 ESCO1Q5FWF5 840 aa23.94■■□□□ 1.42
SNX1-208ENST00000559844 KNSTRNQ9Y448 316 aa23.94■■□□□ 1.42
SNX1-208ENST00000559844 TOM1O60784 492 aa23.93■■□□□ 1.42
SNX1-208ENST00000559844 ORAI2Q96SN7 254 aa23.93■■□□□ 1.42
SNX1-208ENST00000559844 UBAP1LF5GYI3 381 aa23.92■■□□□ 1.42
SNX1-208ENST00000559844 CC2D1BQ5T0F9 858 aaKnown RBP23.92■■□□□ 1.42
SNX1-208ENST00000559844 CABP1Q9NZU7 370 aa23.92■■□□□ 1.42
SNX1-208ENST00000559844 KIF1AQ12756 1690 aa23.91■■□□□ 1.42
SNX1-208ENST00000559844 SLC12A5Q9H2X9 1139 aa23.91■■□□□ 1.42
SNX1-208ENST00000559844 PMFBP1Q8TBY8 1022 aa23.9■■□□□ 1.42
SNX1-208ENST00000559844 NPC1L1Q9UHC9 1359 aa23.9■■□□□ 1.42
SNX1-208ENST00000559844 PHF8Q9UPP1 1060 aa23.89■■□□□ 1.42
SNX1-208ENST00000559844 ROBO1Q9Y6N7 1651 aa23.89■■□□□ 1.42
SNX1-208ENST00000559844 NINLQ9Y2I6 1382 aa23.89■■□□□ 1.42
SNX1-208ENST00000559844 FKBP8Q14318 412 aa23.89■■□□□ 1.41
SNX1-208ENST00000559844 BRINP3Q76B58 766 aa23.87■■□□□ 1.41
SNX1-208ENST00000559844 AKAP12Q02952 1782 aa23.87■■□□□ 1.41
SNX1-208ENST00000559844 PLEKHG3A1L390 1219 aa23.86■■□□□ 1.41
SNX1-208ENST00000559844 PIP4K2BP78356 416 aa23.86■■□□□ 1.41
SNX1-208ENST00000559844 INSRP06213 1382 aa23.86■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms