RNA–Protein interactions for RNA: ENST00000558989.1

SPG11-214, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 1,816 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-214ENST00000558989 CADPS2Q86UW7 1296 aa14.01□□□□□ -0.17
SPG11-214ENST00000558989 PODXL2Q9NZ53 605 aa14.01□□□□□ -0.17
SPG11-214ENST00000558989 MYOM2P54296 1465 aa14□□□□□ -0.17
SPG11-214ENST00000558989 DISP3Q9P2K9 1392 aa14□□□□□ -0.17
SPG11-214ENST00000558989 NCOA3Q9Y6Q9 1424 aa14□□□□□ -0.17
SPG11-214ENST00000558989 SAFB2Q14151 953 aaKnown RBP eCLIP13.99□□□□□ -0.17
SPG11-214ENST00000558989 FAM135BQ49AJ0 1406 aa13.99□□□□□ -0.17
SPG11-214ENST00000558989 C14orf93Q9H972 538 aaKnown RBP13.99□□□□□ -0.17
SPG11-214ENST00000558989 DHX57Q6P158 1386 aaKnown RBP13.99□□□□□ -0.17
SPG11-214ENST00000558989 LAMC1P11047 1609 aa13.98□□□□□ -0.17
SPG11-214ENST00000558989 ADGRL3Q9HAR2 1447 aa13.98□□□□□ -0.17
SPG11-214ENST00000558989 PLEKHH1Q9ULM0 1364 aa13.98□□□□□ -0.17
SPG11-214ENST00000558989 NUTM2FA1L443 756 aa13.98□□□□□ -0.17
SPG11-214ENST00000558989 PTCH1Q13635 1447 aa13.98□□□□□ -0.17
SPG11-214ENST00000558989 YTHDC2Q9H6S0 1430 aaKnown RBP13.98□□□□□ -0.17
SPG11-214ENST00000558989 NRXN1Q9ULB1 1477 aa13.97□□□□□ -0.17
SPG11-214ENST00000558989 KNDC1Q76NI1 1749 aa13.97□□□□□ -0.17
SPG11-214ENST00000558989 LRPPRCP42704 1394 aaKnown RBP13.97□□□□□ -0.17
SPG11-214ENST00000558989 DDX17Q92841 729 aaKnown RBP13.96□□□□□ -0.17
SPG11-214ENST00000558989 MST1RQ04912 1400 aa13.95□□□□□ -0.18
SPG11-214ENST00000558989 TRAK1Q9UPV9 953 aa13.95□□□□□ -0.18
SPG11-214ENST00000558989 BRINP3Q76B58 766 aa13.94□□□□□ -0.18
SPG11-214ENST00000558989 PCGF6Q9BYE7 350 aa13.94□□□□□ -0.18
SPG11-214ENST00000558989 RGPD8O14715 1765 aaPredicted RBP13.94□□□□□ -0.18
SPG11-214ENST00000558989 MED1Q15648 1581 aaPredicted RBP13.94□□□□□ -0.18
SPG11-214ENST00000558989 DCCP43146 1447 aa13.93□□□□□ -0.18
SPG11-214ENST00000558989 ABCC11Q96J66 1382 aa13.93□□□□□ -0.18
SPG11-214ENST00000558989 PRAM1Q96QH2 718 aa13.92□□□□□ -0.18
SPG11-214ENST00000558989 POGKQ9P215 609 aa13.92□□□□□ -0.18
SPG11-214ENST00000558989 CNKSR2Q8WXI2 1034 aa13.92□□□□□ -0.18
SPG11-214ENST00000558989 L3MBTL2Q969R5 705 aa13.92□□□□□ -0.18
SPG11-214ENST00000558989 ORAI2Q96SN7 254 aa13.92□□□□□ -0.18
SPG11-214ENST00000558989 TECPR2O15040 1411 aa13.91□□□□□ -0.18
SPG11-214ENST00000558989 C1orf167Q5SNV9 1468 aa13.91□□□□□ -0.18
SPG11-214ENST00000558989 ADGRB1O14514 1584 aa13.91□□□□□ -0.18
SPG11-214ENST00000558989 COL16A1Q07092 1604 aaPredicted RBP13.91□□□□□ -0.18
SPG11-214ENST00000558989 HIRIP3Q9BW71 556 aaPredicted RBP13.9□□□□□ -0.18
SPG11-214ENST00000558989 PRAG1Q86YV5 1406 aa13.9□□□□□ -0.18
SPG11-214ENST00000558989 MINK1Q8N4C8 1332 aaPredicted RBP13.89□□□□□ -0.19
SPG11-214ENST00000558989 NBPF1Q3BBV0 1214 aa13.89□□□□□ -0.19
SPG11-214ENST00000558989 ESCO1Q5FWF5 840 aa13.89□□□□□ -0.19
SPG11-214ENST00000558989 ARHGEF28Q8N1W1 1705 aaKnown RBP13.89□□□□□ -0.19
SPG11-214ENST00000558989 NHSL1Q5SYE7 1610 aa13.88□□□□□ -0.19
SPG11-214ENST00000558989 CDC42BPGQ6DT37 1551 aa13.88□□□□□ -0.19
SPG11-214ENST00000558989 FMN2Q9NZ56 1722 aa13.88□□□□□ -0.19
SPG11-214ENST00000558989 AHDC1Q5TGY3 1603 aaPredicted RBP13.88□□□□□ -0.19
SPG11-214ENST00000558989 XPCQ01831 940 aaPredicted RBP13.87□□□□□ -0.19
SPG11-214ENST00000558989 PELP1Q8IZL8 1130 aaKnown RBP13.87□□□□□ -0.19
SPG11-214ENST00000558989 STAC3Q96MF2 364 aa13.87□□□□□ -0.19
SPG11-214ENST00000558989 NUTM2BA6NNL0 878 aaPredicted RBP13.86□□□□□ -0.19
SPG11-214ENST00000558989 NUTM2EB1AL46 878 aaPredicted RBP13.86□□□□□ -0.19
SPG11-214ENST00000558989 ILDR2Q71H61 639 aa13.86□□□□□ -0.19
SPG11-214ENST00000558989 NUTM2AQ8IVF1 878 aaPredicted RBP13.86□□□□□ -0.19
SPG11-214ENST00000558989 KIAA1210Q9ULL0 1709 aa13.86□□□□□ -0.19
SPG11-214ENST00000558989 ATXN8OSP0DMR3 200 aa13.85□□□□□ -0.19
SPG11-214ENST00000558989 JCADQ9P266 1359 aa13.85□□□□□ -0.19
SPG11-214ENST00000558989 DLC1Q96QB1 1528 aa13.85□□□□□ -0.19
SPG11-214ENST00000558989 MSH5O43196 834 aa13.83□□□□□ -0.2
SPG11-214ENST00000558989 FOXO3O43524 673 aa13.83□□□□□ -0.2
SPG11-214ENST00000558989 PLEKHG5O94827 1062 aa13.83□□□□□ -0.2
SPG11-214ENST00000558989 SIRT1Q96EB6 747 aa13.83□□□□□ -0.2
SPG11-214ENST00000558989 TONSLQ96HA7 1378 aa13.83□□□□□ -0.2
SPG11-214ENST00000558989 SHPRHQ149N8 1683 aa13.83□□□□□ -0.2
SPG11-214ENST00000558989 TRPM1Q7Z4N2 1603 aa13.82□□□□□ -0.2
SPG11-214ENST00000558989 MEX3CQ5U5Q3 659 aaKnown RBP13.82□□□□□ -0.2
SPG11-214ENST00000558989 PMFBP1Q8TBY8 1022 aa13.81□□□□□ -0.2
SPG11-214ENST00000558989 NBPF8Q3BBV2 869 aa13.8□□□□□ -0.2
SPG11-214ENST00000558989 LRRC59Q96AG4 307 aaKnown RBP13.8□□□□□ -0.2
SPG11-214ENST00000558989 USP32Q8NFA0 1604 aa13.8□□□□□ -0.2
SPG11-214ENST00000558989 LRP6O75581 1613 aa13.8□□□□□ -0.2
SPG11-214ENST00000558989 QRICH2Q9H0J4 1663 aa13.79□□□□□ -0.2
SPG11-214ENST00000558989 ROCK2O75116 1388 aaKnown RBP13.79□□□□□ -0.2
SPG11-214ENST00000558989 KIF1AQ12756 1690 aa13.78□□□□□ -0.2
SPG11-214ENST00000558989 PHF8Q9UPP1 1060 aa13.78□□□□□ -0.2
SPG11-214ENST00000558989 ADGRB2O60241 1585 aa13.78□□□□□ -0.2
SPG11-214ENST00000558989 NPHP3Q7Z494 1330 aa13.77□□□□□ -0.2
SPG11-214ENST00000558989 WASLO00401 505 aaPredicted RBP13.77□□□□□ -0.21
SPG11-214ENST00000558989 LMOD2Q6P5Q4 547 aa13.77□□□□□ -0.21
SPG11-214ENST00000558989 SOS2Q07890 1332 aaPredicted RBP13.77□□□□□ -0.21
SPG11-214ENST00000558989 PNPLA6Q8IY17 1366 aa13.77□□□□□ -0.21
SPG11-214ENST00000558989 ADAMTS2O95450 1211 aa13.76□□□□□ -0.21
SPG11-214ENST00000558989 RGS17Q9UGC6 210 aaPredicted RBP13.76□□□□□ -0.21
SPG11-214ENST00000558989 SPATA31A6Q5VVP1 1343 aa13.76□□□□□ -0.21
SPG11-214ENST00000558989 PRR36Q9H6K5 1346 aa13.76□□□□□ -0.21
SPG11-214ENST00000558989 PXDNQ92626 1479 aa13.76□□□□□ -0.21
SPG11-214ENST00000558989 KRT28Q7Z3Y7 464 aa13.76□□□□□ -0.21
SPG11-214ENST00000558989 CDK19Q9BWU1 502 aa13.76□□□□□ -0.21
SPG11-214ENST00000558989 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.76□□□□□ -0.21
SPG11-214ENST00000558989 CENPJQ9HC77 1338 aaPredicted RBP13.75□□□□□ -0.21
SPG11-214ENST00000558989 TULP4Q9NRJ4 1543 aa13.74□□□□□ -0.21
SPG11-214ENST00000558989 PSME1Q06323 249 aa13.74□□□□□ -0.21
SPG11-214ENST00000558989 ITSN1Q15811 1721 aa13.74□□□□□ -0.21
SPG11-214ENST00000558989 MYT1Q01538 1121 aa13.74□□□□□ -0.21
SPG11-214ENST00000558989 CCER1Q8TC90 406 aaPredicted RBP13.74□□□□□ -0.21
SPG11-214ENST00000558989 C8orf37Q96NL8 207 aa13.74□□□□□ -0.21
SPG11-214ENST00000558989 SRPK2P78362 688 aaKnown RBP13.73□□□□□ -0.21
SPG11-214ENST00000558989 KLHL34Q8N239 644 aa13.73□□□□□ -0.21
SPG11-214ENST00000558989 NUDT16Q96DE0 195 aaKnown RBP13.73□□□□□ -0.21
SPG11-214ENST00000558989 CARD11Q9BXL7 1154 aa13.73□□□□□ -0.21
SPG11-214ENST00000558989 CABP2Q9NPB3 220 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms