RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 TUSC1Q2TAM9 212 aa8.5□□□□□ -1.05
VPS13C-207ENST00000558919 MSS51Q4VC12 460 aa8.5□□□□□ -1.05
VPS13C-207ENST00000558919 RIC3Q7Z5B4 369 aa8.5□□□□□ -1.05
VPS13C-207ENST00000558919 SLC6A16Q9GZN6 736 aa8.5□□□□□ -1.05
VPS13C-207ENST00000558919 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.5□□□□□ -1.05
VPS13C-207ENST00000558919 PCDHGC3Q9UN70 934 aa8.5□□□□□ -1.05
VPS13C-207ENST00000558919 USB1Q9BQ65 265 aaKnown RBP8.49□□□□□ -1.05
VPS13C-207ENST00000558919 RGS20O76081 388 aa8.48□□□□□ -1.05
VPS13C-207ENST00000558919 S1PR4O95977 384 aa8.48□□□□□ -1.05
VPS13C-207ENST00000558919 SH3D19Q5HYK7 790 aa8.48□□□□□ -1.05
VPS13C-207ENST00000558919 FAM160A2Q8N612 972 aaPredicted RBP8.48□□□□□ -1.05
VPS13C-207ENST00000558919 SPDYE5A6NIY4 337 aa8.47□□□□□ -1.05
VPS13C-207ENST00000558919 CLK2P49760 499 aaKnown RBP8.47□□□□□ -1.05
VPS13C-207ENST00000558919 SKIV2LQ15477 1246 aaKnown RBP8.47□□□□□ -1.05
VPS13C-207ENST00000558919 PRPF38BQ5VTL8 546 aaKnown RBP8.47□□□□□ -1.05
VPS13C-207ENST00000558919 RETREG3Q86VR2 466 aa8.47□□□□□ -1.05
VPS13C-207ENST00000558919 C6orf229H3BNL8 230 aa8.46□□□□□ -1.06
VPS13C-207ENST00000558919 MTMR2Q13614 643 aa8.46□□□□□ -1.06
VPS13C-207ENST00000558919 SYMPKQ92797 1274 aaKnown RBP8.46□□□□□ -1.06
VPS13C-207ENST00000558919 LIMD1Q9UGP4 676 aa8.46□□□□□ -1.06
VPS13C-207ENST00000558919 PCDHB15Q9Y5E8 787 aa8.46□□□□□ -1.06
VPS13C-207ENST00000558919 RNF223E7ERA6 249 aa8.45□□□□□ -1.06
VPS13C-207ENST00000558919 ANKLE1Q8NAG6 615 aa8.45□□□□□ -1.06
VPS13C-207ENST00000558919 IL27Q8NEV9 243 aa8.45□□□□□ -1.06
VPS13C-207ENST00000558919 ZBTB3Q9H5J0 574 aa8.45□□□□□ -1.06
VPS13C-207ENST00000558919 GOPCQ9HD26 462 aa8.45□□□□□ -1.06
VPS13C-207ENST00000558919 MMP16P51512 607 aa8.44□□□□□ -1.06
VPS13C-207ENST00000558919 POLR3EQ9NVU0 708 aa8.44□□□□□ -1.06
VPS13C-207ENST00000558919 HRCP23327 699 aa8.43□□□□□ -1.06
VPS13C-207ENST00000558919 PRDM9Q9NQV7 894 aa8.43□□□□□ -1.06
VPS13C-207ENST00000558919 PPEF1O14829 653 aaPredicted RBP8.42□□□□□ -1.06
VPS13C-207ENST00000558919 LILRB3O75022 631 aa8.42□□□□□ -1.06
VPS13C-207ENST00000558919 DXOO77932 396 aaKnown RBP8.42□□□□□ -1.06
VPS13C-207ENST00000558919 CSPP1Q1MSJ5 1256 aa8.42□□□□□ -1.06
VPS13C-207ENST00000558919 JUNDP17535 347 aa8.41□□□□□ -1.06
VPS13C-207ENST00000558919 DESI1Q6ICB0 168 aa8.41□□□□□ -1.06
VPS13C-207ENST00000558919 PRR7Q8TB68 274 aa8.41□□□□□ -1.06
VPS13C-207ENST00000558919 QPCTQ16769 361 aa8.4□□□□□ -1.06
VPS13C-207ENST00000558919 CABLES1Q8TDN4 633 aa8.4□□□□□ -1.06
VPS13C-207ENST00000558919 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.4□□□□□ -1.06
VPS13C-207ENST00000558919 NUTM2BA6NNL0 878 aaPredicted RBP8.39□□□□□ -1.07
VPS13C-207ENST00000558919 NUTM2EB1AL46 878 aaPredicted RBP8.39□□□□□ -1.07
VPS13C-207ENST00000558919 NUTM2DQ5VT03 806 aaPredicted RBP8.39□□□□□ -1.07
VPS13C-207ENST00000558919 NUTM2AQ8IVF1 878 aaPredicted RBP8.39□□□□□ -1.07
VPS13C-207ENST00000558919 PROCA1Q8NCQ7 364 aaPredicted RBP8.39□□□□□ -1.07
VPS13C-207ENST00000558919 FCF1Q9Y324 198 aaKnown RBP8.39□□□□□ -1.07
VPS13C-207ENST00000558919 V9GY48 417 aaPredicted RBP8.39□□□□□ -1.07
VPS13C-207ENST00000558919 PCMTD1Q96MG8 357 aaPredicted RBP8.38□□□□□ -1.07
VPS13C-207ENST00000558919 IRX2Q9BZI1 471 aaPredicted RBP8.38□□□□□ -1.07
VPS13C-207ENST00000558919 CFAP99D6REC4 459 aa8.37□□□□□ -1.07
VPS13C-207ENST00000558919 PPP2R2DQ66LE6 453 aa8.37□□□□□ -1.07
VPS13C-207ENST00000558919 PRKD2Q9BZL6 878 aa8.37□□□□□ -1.07
VPS13C-207ENST00000558919 ATP1B4Q9UN42 357 aaPredicted RBP8.37□□□□□ -1.07
VPS13C-207ENST00000558919 PTPRNQ16849 979 aa8.36□□□□□ -1.07
VPS13C-207ENST00000558919 RTL5Q5HYW3 569 aaPredicted RBP8.36□□□□□ -1.07
VPS13C-207ENST00000558919 PLA2G2CQ5R387 149 aa8.36□□□□□ -1.07
VPS13C-207ENST00000558919 SLC19A1P41440 591 aa8.35□□□□□ -1.07
VPS13C-207ENST00000558919 EMID1Q96A84 441 aaPredicted RBP8.35□□□□□ -1.07
VPS13C-207ENST00000558919 NUDT12Q9BQG2 462 aa8.35□□□□□ -1.07
VPS13C-207ENST00000558919 RPIAP49247 311 aa8.34□□□□□ -1.07
VPS13C-207ENST00000558919 LYPD8Q6UX82 237 aa8.34□□□□□ -1.07
VPS13C-207ENST00000558919 LIAT1Q6ZQX7 453 aa8.34□□□□□ -1.07
VPS13C-207ENST00000558919 HELBQ8NG08 1087 aaPredicted RBP8.34□□□□□ -1.07
VPS13C-207ENST00000558919 ZBTB24O43167 697 aaPredicted RBP8.33□□□□□ -1.08
VPS13C-207ENST00000558919 CCNYL3P0C7X3 344 aa8.33□□□□□ -1.08
VPS13C-207ENST00000558919 FBXO31Q5XUX0 539 aaPredicted RBP8.33□□□□□ -1.08
VPS13C-207ENST00000558919 CCDC24Q8N4L8 307 aa8.33□□□□□ -1.08
VPS13C-207ENST00000558919 SPRYD7Q5W111 196 aa8.32□□□□□ -1.08
VPS13C-207ENST00000558919 EVA1BQ9NVM1 165 aa8.32□□□□□ -1.08
VPS13C-207ENST00000558919 TSC1Q92574 1164 aa8.31□□□□□ -1.08
VPS13C-207ENST00000558919 CD2BP2O95400 341 aaKnown RBP8.3□□□□□ -1.08
VPS13C-207ENST00000558919 RFC5P40937 340 aa8.3□□□□□ -1.08
VPS13C-207ENST00000558919 KCNH2Q12809 1159 aa8.3□□□□□ -1.08
VPS13C-207ENST00000558919 ZNF598Q86UK7 904 aaKnown RBP8.3□□□□□ -1.08
VPS13C-207ENST00000558919 PER1O15534 1290 aaPredicted RBP8.28□□□□□ -1.08
VPS13C-207ENST00000558919 F12P00748 615 aaPredicted RBP8.28□□□□□ -1.08
VPS13C-207ENST00000558919 CTDSPL2Q05D32 466 aa8.28□□□□□ -1.08
VPS13C-207ENST00000558919 TMEM259Q4ZIN3 620 aa8.28□□□□□ -1.08
VPS13C-207ENST00000558919 PTCRAQ6ISU1 281 aaPredicted RBP8.28□□□□□ -1.08
VPS13C-207ENST00000558919 TRIM32Q13049 653 aa8.27□□□□□ -1.09
VPS13C-207ENST00000558919 ZNF697Q5TEC3 545 aa8.27□□□□□ -1.09
VPS13C-207ENST00000558919 AP1G2O75843 785 aa8.26□□□□□ -1.09
VPS13C-207ENST00000558919 CTHP32929 405 aa8.26□□□□□ -1.09
VPS13C-207ENST00000558919 UNC93B1Q9H1C4 597 aa8.26□□□□□ -1.09
VPS13C-207ENST00000558919 TMEM132AQ24JP5 1023 aa8.25□□□□□ -1.09
VPS13C-207ENST00000558919 WNT7BP56706 349 aa8.24□□□□□ -1.09
VPS13C-207ENST00000558919 MAP10Q9P2G4 905 aa8.24□□□□□ -1.09
VPS13C-207ENST00000558919 USP17L8P0C7I0 530 aa8.23□□□□□ -1.09
VPS13C-207ENST00000558919 BANK1Q8NDB2 785 aa8.23□□□□□ -1.09
VPS13C-207ENST00000558919 GDF9O60383 454 aa8.22□□□□□ -1.09
VPS13C-207ENST00000558919 PRR20EP86478 221 aa8.22□□□□□ -1.09
VPS13C-207ENST00000558919 PRR20CP86479 221 aa8.22□□□□□ -1.09
VPS13C-207ENST00000558919 PRR20DP86480 221 aa8.22□□□□□ -1.09
VPS13C-207ENST00000558919 PRR20BP86481 221 aa8.22□□□□□ -1.09
VPS13C-207ENST00000558919 PRR20AP86496 221 aa8.22□□□□□ -1.09
VPS13C-207ENST00000558919 ARMC2Q8NEN0 867 aa8.22□□□□□ -1.09
VPS13C-207ENST00000558919 LRRN4Q8WUT4 740 aa8.22□□□□□ -1.09
VPS13C-207ENST00000558919 LAPTM4AQ15012 233 aa8.21□□□□□ -1.1
VPS13C-207ENST00000558919 TRIM67Q6ZTA4 783 aa8.21□□□□□ -1.1
VPS13C-207ENST00000558919 WNT7AO00755 349 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms