RNA–Protein interactions for RNA: ENST00000557916.5

SMAD6-202, Transcript of SMAD family member 6, humanhuman

TSL 1 (best)

Gene SMAD6, Length 1,401 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD6-202ENST00000557916 SAFB2Q14151 953 aaKnown RBP eCLIP36.4■■■■□ 3.42
SMAD6-202ENST00000557916 CADPS2Q86UW7 1296 aa36.4■■■■□ 3.42
SMAD6-202ENST00000557916 RALGAPBQ86X10 1494 aa36.4■■■■□ 3.42
SMAD6-202ENST00000557916 DCCP43146 1447 aa36.38■■■■□ 3.41
SMAD6-202ENST00000557916 GPRASP1Q5JY77 1395 aa36.37■■■■□ 3.41
SMAD6-202ENST00000557916 PIP4K2BP78356 416 aa36.37■■■■□ 3.41
SMAD6-202ENST00000557916 SCAF1Q9H7N4 1312 aaKnown RBP36.35■■■■□ 3.41
SMAD6-202ENST00000557916 CARD11Q9BXL7 1154 aa36.34■■■■□ 3.41
SMAD6-202ENST00000557916 ARHGEF28Q8N1W1 1705 aaKnown RBP36.34■■■■□ 3.41
SMAD6-202ENST00000557916 SLAIN2Q9P270 581 aa36.34■■■■□ 3.41
SMAD6-202ENST00000557916 MINK1Q8N4C8 1332 aaPredicted RBP36.27■■■■□ 3.4
SMAD6-202ENST00000557916 ILDR1Q86SU0 546 aaPredicted RBP36.26■■■■□ 3.4
SMAD6-202ENST00000557916 CDC42BPGQ6DT37 1551 aa36.26■■■■□ 3.4
SMAD6-202ENST00000557916 CENPJQ9HC77 1338 aaPredicted RBP36.26■■■■□ 3.39
SMAD6-202ENST00000557916 HIRIP3Q9BW71 556 aaPredicted RBP36.25■■■■□ 3.39
SMAD6-202ENST00000557916 MST1RQ04912 1400 aa36.24■■■■□ 3.39
SMAD6-202ENST00000557916 EIF3AQ14152 1382 aaKnown RBP36.23■■■■□ 3.39
SMAD6-202ENST00000557916 ADGRB2O60241 1585 aa36.18■■■■□ 3.38
SMAD6-202ENST00000557916 NUTM2FA1L443 756 aa36.17■■■■□ 3.38
SMAD6-202ENST00000557916 C1orf167Q5SNV9 1468 aa36.17■■■■□ 3.38
SMAD6-202ENST00000557916 WASLO00401 505 aaPredicted RBP36.15■■■■□ 3.38
SMAD6-202ENST00000557916 ROBO1Q9Y6N7 1651 aa36.14■■■■□ 3.38
SMAD6-202ENST00000557916 FMN2Q9NZ56 1722 aa36.13■■■■□ 3.37
SMAD6-202ENST00000557916 BRINP3Q76B58 766 aa36.12■■■■□ 3.37
SMAD6-202ENST00000557916 QRICH2Q9H0J4 1663 aa36.12■■■■□ 3.37
SMAD6-202ENST00000557916 ORAI2Q96SN7 254 aa36.09■■■■□ 3.37
SMAD6-202ENST00000557916 CDK19Q9BWU1 502 aa36.08■■■■□ 3.37
SMAD6-202ENST00000557916 ESCO1Q5FWF5 840 aa36.07■■■■□ 3.36
SMAD6-202ENST00000557916 USP47Q96K76 1375 aa36.07■■■■□ 3.36
SMAD6-202ENST00000557916 HSPA1LP34931 641 aa36.06■■■■□ 3.36
SMAD6-202ENST00000557916 ST20-MTHFSA0A0A6YYL1 179 aa36.04■■■■□ 3.36
SMAD6-202ENST00000557916 ANKARQ7Z5J8 1434 aa36.03■■■■□ 3.36
SMAD6-202ENST00000557916 TULP4Q9NRJ4 1543 aa36.02■■■■□ 3.36
SMAD6-202ENST00000557916 SBNO2Q9Y2G9 1366 aa36.01■■■■□ 3.35
SMAD6-202ENST00000557916 EVC2Q86UK5 1308 aa36■■■■□ 3.35
SMAD6-202ENST00000557916 PRR36Q9H6K5 1346 aa36■■■■□ 3.35
SMAD6-202ENST00000557916 SRPK2P78362 688 aaKnown RBP35.99■■■■□ 3.35
SMAD6-202ENST00000557916 USP32Q8NFA0 1604 aa35.98■■■■□ 3.35
SMAD6-202ENST00000557916 NUDT16Q96DE0 195 aaKnown RBP35.97■■■■□ 3.35
SMAD6-202ENST00000557916 CABP2Q9NPB3 220 aa35.96■■■■□ 3.35
SMAD6-202ENST00000557916 RGPD8O14715 1765 aaPredicted RBP35.95■■■■□ 3.35
SMAD6-202ENST00000557916 PHF8Q9UPP1 1060 aa35.95■■■■□ 3.35
SMAD6-202ENST00000557916 DDX17Q92841 729 aaKnown RBP35.94■■■■□ 3.34
SMAD6-202ENST00000557916 TESK2Q96S53 571 aa35.94■■■■□ 3.34
SMAD6-202ENST00000557916 AHDC1Q5TGY3 1603 aaPredicted RBP35.94■■■■□ 3.34
SMAD6-202ENST00000557916 ATP7BP35670 1465 aa35.93■■■■□ 3.34
SMAD6-202ENST00000557916 PHLPP1O60346 1717 aa35.91■■■■□ 3.34
SMAD6-202ENST00000557916 FOXO3O43524 673 aa35.91■■■■□ 3.34
SMAD6-202ENST00000557916 SLC24A1O60721 1099 aa35.91■■■■□ 3.34
SMAD6-202ENST00000557916 EIF4G2P78344 907 aaKnown RBP eCLIP35.9■■■■□ 3.345e-6■■■■□ 19.7
SMAD6-202ENST00000557916 PMFBP1Q8TBY8 1022 aa35.9■■■■□ 3.34
SMAD6-202ENST00000557916 CCDC61Q9Y6R9 512 aa35.9■■■■□ 3.34
SMAD6-202ENST00000557916 NHSL1Q5SYE7 1610 aa35.89■■■■□ 3.34
SMAD6-202ENST00000557916 KIF1AQ12756 1690 aa35.88■■■■□ 3.33
SMAD6-202ENST00000557916 NPHP3Q7Z494 1330 aa35.88■■■■□ 3.33
SMAD6-202ENST00000557916 HSPA5P11021 654 aaKnown RBP35.84■■■■□ 3.33
SMAD6-202ENST00000557916 COL16A1Q07092 1604 aaPredicted RBP35.83■■■■□ 3.33
SMAD6-202ENST00000557916 ITSN1Q15811 1721 aa35.83■■■■□ 3.33
SMAD6-202ENST00000557916 SOS2Q07890 1332 aaPredicted RBP35.83■■■■□ 3.33
SMAD6-202ENST00000557916 TMF1P82094 1093 aa35.81■■■■□ 3.32
SMAD6-202ENST00000557916 XPCQ01831 940 aaPredicted RBP35.81■■■■□ 3.32
SMAD6-202ENST00000557916 NGDNQ8NEJ9 315 aaKnown RBP35.81■■■■□ 3.32
SMAD6-202ENST00000557916 TOPAZ1Q8N9V7 1692 aa35.8■■■■□ 3.32
SMAD6-202ENST00000557916 PPIP5K1Q6PFW1 1433 aa35.79■■■■□ 3.32
SMAD6-202ENST00000557916 ATAD2Q6PL18 1390 aa35.79■■■■□ 3.32
SMAD6-202ENST00000557916 PLEKHG3A1L390 1219 aa35.79■■■■□ 3.32
SMAD6-202ENST00000557916 PSME1Q06323 249 aa35.78■■■■□ 3.32
SMAD6-202ENST00000557916 KRT28Q7Z3Y7 464 aa35.78■■■■□ 3.32
SMAD6-202ENST00000557916 LRRC59Q96AG4 307 aaKnown RBP35.78■■■■□ 3.32
SMAD6-202ENST00000557916 PUS7Q96PZ0 661 aaKnown RBP35.77■■■■□ 3.32
SMAD6-202ENST00000557916 CABP1Q9NZU7 370 aa35.77■■■■□ 3.32
SMAD6-202ENST00000557916 PXDNQ92626 1479 aa35.76■■■■□ 3.32
SMAD6-202ENST00000557916 DISP3Q9P2K9 1392 aa35.76■■■■□ 3.31
SMAD6-202ENST00000557916 ACEP12821 1306 aa35.74■■■■□ 3.31
SMAD6-202ENST00000557916 JCADQ9P266 1359 aa35.73■■■■□ 3.31
SMAD6-202ENST00000557916 POLR3AO14802 1390 aaPredicted RBP35.72■■■■□ 3.31
SMAD6-202ENST00000557916 ZEB1P37275 1124 aaPredicted RBP35.7■■■■□ 3.31
SMAD6-202ENST00000557916 CDCA8Q53HL2 280 aa35.7■■■■□ 3.31
SMAD6-202ENST00000557916 TMC1Q8TDI8 760 aa35.67■■■■□ 3.3
SMAD6-202ENST00000557916 SPATA31A3Q5VYP0 1347 aa35.64■■■■□ 3.3
SMAD6-202ENST00000557916 SBNO1A3KN83 1393 aa35.64■■■■□ 3.3
SMAD6-202ENST00000557916 PNPLA6Q8IY17 1366 aa35.63■■■■□ 3.29
SMAD6-202ENST00000557916 SLC12A5Q9H2X9 1139 aa35.63■■■■□ 3.29
SMAD6-202ENST00000557916 SHPRHQ149N8 1683 aa35.61■■■■□ 3.29
SMAD6-202ENST00000557916 PAK3O75914 559 aaPredicted RBP35.6■■■■□ 3.29
SMAD6-202ENST00000557916 TNS3Q68CZ2 1445 aa35.6■■■■□ 3.29
SMAD6-202ENST00000557916 LMOD2Q6P5Q4 547 aa35.59■■■■□ 3.29
SMAD6-202ENST00000557916 ZNF692Q9BU19 519 aaPredicted RBP35.59■■■■□ 3.29
SMAD6-202ENST00000557916 NINLQ9Y2I6 1382 aa35.58■■■■□ 3.29
SMAD6-202ENST00000557916 SPATA31A6Q5VVP1 1343 aa35.58■■■■□ 3.29
SMAD6-202ENST00000557916 TRPM3Q9HCF6 1732 aaPredicted RBP35.57■■■■□ 3.29
SMAD6-202ENST00000557916 CPSF1Q10570 1443 aaKnown RBP35.56■■■■□ 3.28
SMAD6-202ENST00000557916 USP6P35125 1406 aa35.55■■■■□ 3.28
SMAD6-202ENST00000557916 POLR3GLQ9BT43 218 aa35.55■■■■□ 3.28
SMAD6-202ENST00000557916 HDGFL2Q7Z4V5 671 aaPredicted RBP35.54■■■■□ 3.28
SMAD6-202ENST00000557916 TERF2IPQ9NYB0 399 aa35.54■■■■□ 3.28
SMAD6-202ENST00000557916 ARHGEF10O15013 1369 aa35.53■■■■□ 3.28
SMAD6-202ENST00000557916 BRD4O60885 1362 aaPredicted RBP35.53■■■■□ 3.28
SMAD6-202ENST00000557916 KTN1Q86UP2 1357 aaKnown RBP35.53■■■■□ 3.28
SMAD6-202ENST00000557916 CD163L1Q9NR16 1453 aa35.52■■■■□ 3.28
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms