RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 PXDNQ92626 1479 aa12.55□□□□□ -0.4
CCDC88C-214ENST00000557507 RGPD8O14715 1765 aaPredicted RBP12.55□□□□□ -0.4
CCDC88C-214ENST00000557507 KNDC1Q76NI1 1749 aa12.54□□□□□ -0.4
CCDC88C-214ENST00000557507 ORAI2Q96SN7 254 aa12.54□□□□□ -0.4
CCDC88C-214ENST00000557507 USP21Q9UK80 565 aa12.53□□□□□ -0.4
CCDC88C-214ENST00000557507 ABCA3Q99758 1704 aa12.53□□□□□ -0.4
CCDC88C-214ENST00000557507 FMN2Q9NZ56 1722 aa12.53□□□□□ -0.4
CCDC88C-214ENST00000557507 GLI3P10071 1580 aa12.52□□□□□ -0.4
CCDC88C-214ENST00000557507 PLCH1Q4KWH8 1693 aa12.51□□□□□ -0.41
CCDC88C-214ENST00000557507 FNBP4Q8N3X1 1017 aaPredicted RBP12.51□□□□□ -0.41
CCDC88C-214ENST00000557507 TRPC5Q9UL62 973 aaPredicted RBP12.51□□□□□ -0.41
CCDC88C-214ENST00000557507 HFM1A2PYH4 1435 aa12.51□□□□□ -0.41
CCDC88C-214ENST00000557507 BCL9LQ86UU0 1499 aa12.51□□□□□ -0.41
CCDC88C-214ENST00000557507 KIF1AQ12756 1690 aa12.51□□□□□ -0.41
CCDC88C-214ENST00000557507 NAIPQ13075 1403 aa12.5□□□□□ -0.41
CCDC88C-214ENST00000557507 USP32Q8NFA0 1604 aa12.5□□□□□ -0.41
CCDC88C-214ENST00000557507 NWD2Q9ULI1 1742 aa12.48□□□□□ -0.41
CCDC88C-214ENST00000557507 PPARGC1BQ86YN6 1023 aaKnown RBP12.47□□□□□ -0.41
CCDC88C-214ENST00000557507 NPHP3Q7Z494 1330 aa12.46□□□□□ -0.41
CCDC88C-214ENST00000557507 XPCQ01831 940 aaPredicted RBP12.46□□□□□ -0.41
CCDC88C-214ENST00000557507 LRP5O75197 1615 aa12.46□□□□□ -0.41
CCDC88C-214ENST00000557507 RALGAPBQ86X10 1494 aa12.46□□□□□ -0.42
CCDC88C-214ENST00000557507 RRBP1Q9P2E9 1410 aaKnown RBP12.45□□□□□ -0.42
CCDC88C-214ENST00000557507 VGFO15240 615 aaPredicted RBP12.45□□□□□ -0.42
CCDC88C-214ENST00000557507 ZRANB1Q9UGI0 708 aa12.45□□□□□ -0.42
CCDC88C-214ENST00000557507 SLIT2O94813 1529 aa12.45□□□□□ -0.42
CCDC88C-214ENST00000557507 TECPR2O15040 1411 aa12.45□□□□□ -0.42
CCDC88C-214ENST00000557507 ESCO1Q5FWF5 840 aa12.44□□□□□ -0.42
CCDC88C-214ENST00000557507 NRAPQ86VF7 1730 aa12.44□□□□□ -0.42
CCDC88C-214ENST00000557507 RPGRIP1LQ68CZ1 1315 aa12.42□□□□□ -0.42
CCDC88C-214ENST00000557507 FOXO3O43524 673 aa12.42□□□□□ -0.42
CCDC88C-214ENST00000557507 GJD4Q96KN9 370 aaPredicted RBP12.42□□□□□ -0.42
CCDC88C-214ENST00000557507 PLEKHH1Q9ULM0 1364 aa12.42□□□□□ -0.42
CCDC88C-214ENST00000557507 NUTM2FA1L443 756 aa12.41□□□□□ -0.42
CCDC88C-214ENST00000557507 BLMP54132 1417 aaPredicted RBP12.41□□□□□ -0.42
CCDC88C-214ENST00000557507 ADGRF5Q8IZF2 1346 aa12.4□□□□□ -0.42
CCDC88C-214ENST00000557507 CCDC125Q86Z20 511 aa12.4□□□□□ -0.42
CCDC88C-214ENST00000557507 LRPPRCP42704 1394 aaKnown RBP12.4□□□□□ -0.42
CCDC88C-214ENST00000557507 TRPM3Q9HCF6 1732 aaPredicted RBP12.4□□□□□ -0.43
CCDC88C-214ENST00000557507 CRYBG1Q9Y4K1 1723 aa12.4□□□□□ -0.43
CCDC88C-214ENST00000557507 CCDC144AA2RUR9 1427 aa12.39□□□□□ -0.43
CCDC88C-214ENST00000557507 SPATA31E1Q6ZUB1 1445 aa12.39□□□□□ -0.43
CCDC88C-214ENST00000557507 FOXD1Q16676 465 aa12.39□□□□□ -0.43
CCDC88C-214ENST00000557507 WAPLQ7Z5K2 1190 aa12.39□□□□□ -0.43
CCDC88C-214ENST00000557507 RGPD1P0DJD0 1748 aa12.39□□□□□ -0.43
CCDC88C-214ENST00000557507 SPATA31A3Q5VYP0 1347 aa12.38□□□□□ -0.43
CCDC88C-214ENST00000557507 PIK3C2GO75747 1445 aa12.38□□□□□ -0.43
CCDC88C-214ENST00000557507 TNS1Q9HBL0 1735 aaKnown RBP12.38□□□□□ -0.43
CCDC88C-214ENST00000557507 UNC5CLQ8IV45 518 aa12.38□□□□□ -0.43
CCDC88C-214ENST00000557507 ALS2Q96Q42 1657 aa12.38□□□□□ -0.43
CCDC88C-214ENST00000557507 TNS3Q68CZ2 1445 aa12.37□□□□□ -0.43
CCDC88C-214ENST00000557507 DEFB132Q7Z7B7 95 aa12.37□□□□□ -0.43
CCDC88C-214ENST00000557507 SLC4A1APQ9BWU0 796 aaKnown RBP12.37□□□□□ -0.43
CCDC88C-214ENST00000557507 STK26Q9P289 416 aa12.37□□□□□ -0.43
CCDC88C-214ENST00000557507 YTHDC2Q9H6S0 1430 aaKnown RBP12.37□□□□□ -0.43
CCDC88C-214ENST00000557507 ABCC11Q96J66 1382 aa12.36□□□□□ -0.43
CCDC88C-214ENST00000557507 NRXN1Q9ULB1 1477 aa12.35□□□□□ -0.43
CCDC88C-214ENST00000557507 TMEM132EQ6IEE7 984 aa12.35□□□□□ -0.43
CCDC88C-214ENST00000557507 ANKRD30BQ9BXX2 1392 aa12.34□□□□□ -0.43
CCDC88C-214ENST00000557507 COL14A1Q05707 1796 aaKnown RBP12.34□□□□□ -0.43
CCDC88C-214ENST00000557507 ADGRB2O60241 1585 aa12.34□□□□□ -0.43
CCDC88C-214ENST00000557507 SEPT12Q8IYM1 358 aa12.33□□□□□ -0.44
CCDC88C-214ENST00000557507 CABLES1Q8TDN4 633 aa12.33□□□□□ -0.44
CCDC88C-214ENST00000557507 THSD7AQ9UPZ6 1657 aa12.32□□□□□ -0.44
CCDC88C-214ENST00000557507 VPS72Q15906 364 aa12.32□□□□□ -0.44
CCDC88C-214ENST00000557507 RGL3Q3MIN7 710 aa12.32□□□□□ -0.44
CCDC88C-214ENST00000557507 KRT28Q7Z3Y7 464 aa12.32□□□□□ -0.44
CCDC88C-214ENST00000557507 PLEKHG5O94827 1062 aa12.31□□□□□ -0.44
CCDC88C-214ENST00000557507 SBNO1A3KN83 1393 aa12.3□□□□□ -0.44
CCDC88C-214ENST00000557507 PHF8Q9UPP1 1060 aa12.3□□□□□ -0.44
CCDC88C-214ENST00000557507 PHRF1Q9P1Y6 1649 aaKnown RBP12.29□□□□□ -0.44
CCDC88C-214ENST00000557507 ITSN1Q15811 1721 aa12.29□□□□□ -0.44
CCDC88C-214ENST00000557507 DLC1Q96QB1 1528 aa12.29□□□□□ -0.44
CCDC88C-214ENST00000557507 HAP1P54257 671 aaPredicted RBP12.29□□□□□ -0.44
CCDC88C-214ENST00000557507 SF3B2Q13435 895 aaKnown RBP12.29□□□□□ -0.44
CCDC88C-214ENST00000557507 KRT27Q7Z3Y8 459 aa12.29□□□□□ -0.44
CCDC88C-214ENST00000557507 ARHGEF10O15013 1369 aa12.29□□□□□ -0.44
CCDC88C-214ENST00000557507 PSDA5PKW4 1024 aaPredicted RBP12.28□□□□□ -0.44
CCDC88C-214ENST00000557507 ONECUT3O60422 494 aaPredicted RBP12.28□□□□□ -0.44
CCDC88C-214ENST00000557507 CCDC9Q9Y3X0 531 aaKnown RBP12.28□□□□□ -0.44
CCDC88C-214ENST00000557507 RREB1Q92766 1687 aa12.28□□□□□ -0.44
CCDC88C-214ENST00000557507 ANKARQ7Z5J8 1434 aa12.28□□□□□ -0.44
CCDC88C-214ENST00000557507 ADGRB1O14514 1584 aa12.27□□□□□ -0.44
CCDC88C-214ENST00000557507 NUP188Q5SRE5 1749 aa12.26□□□□□ -0.45
CCDC88C-214ENST00000557507 ARHGEF28Q8N1W1 1705 aaKnown RBP12.26□□□□□ -0.45
CCDC88C-214ENST00000557507 FAM83GA6ND36 823 aa12.26□□□□□ -0.45
CCDC88C-214ENST00000557507 PSME1Q06323 249 aa12.26□□□□□ -0.45
CCDC88C-214ENST00000557507 LMOD2Q6P5Q4 547 aa12.26□□□□□ -0.45
CCDC88C-214ENST00000557507 HRCP23327 699 aa12.25□□□□□ -0.45
CCDC88C-214ENST00000557507 SAFB2Q14151 953 aaKnown RBP eCLIP12.25□□□□□ -0.45
CCDC88C-214ENST00000557507 SIRT1Q96EB6 747 aa12.25□□□□□ -0.45
CCDC88C-214ENST00000557507 C14orf93Q9H972 538 aaKnown RBP12.25□□□□□ -0.45
CCDC88C-214ENST00000557507 TULP4Q9NRJ4 1543 aa12.25□□□□□ -0.45
CCDC88C-214ENST00000557507 A0A0G2JS52 829 aa12.24□□□□□ -0.45
CCDC88C-214ENST00000557507 DISP2A7MBM2 1401 aa12.24□□□□□ -0.45
CCDC88C-214ENST00000557507 BAG6P46379 1132 aa12.24□□□□□ -0.45
CCDC88C-214ENST00000557507 MYT1Q01538 1121 aa12.24□□□□□ -0.45
CCDC88C-214ENST00000557507 FAM98CQ17RN3 349 aaKnown RBP12.24□□□□□ -0.45
CCDC88C-214ENST00000557507 CFAP70Q5T0N1 1121 aa12.24□□□□□ -0.45
CCDC88C-214ENST00000557507 DHX57Q6P158 1386 aaKnown RBP12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms