RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 PLEKHH1Q9ULM0 1364 aa17.96■□□□□ 0.47
SLIRP-209ENST00000557342 ARHGEF28Q8N1W1 1705 aaKnown RBP17.96■□□□□ 0.47
SLIRP-209ENST00000557342 POGKQ9P215 609 aa17.96■□□□□ 0.47
SLIRP-209ENST00000557342 AHDC1Q5TGY3 1603 aaPredicted RBP17.96■□□□□ 0.47
SLIRP-209ENST00000557342 PRAM1Q96QH2 718 aa17.95■□□□□ 0.46
SLIRP-209ENST00000557342 TRAK1Q9UPV9 953 aa17.95■□□□□ 0.46
SLIRP-209ENST00000557342 FMN2Q9NZ56 1722 aa17.95■□□□□ 0.46
SLIRP-209ENST00000557342 NHSL1Q5SYE7 1610 aa17.94■□□□□ 0.46
SLIRP-209ENST00000557342 TRPM1Q7Z4N2 1603 aa17.94■□□□□ 0.46
SLIRP-209ENST00000557342 TONSLQ96HA7 1378 aa17.94■□□□□ 0.46
SLIRP-209ENST00000557342 BRINP3Q76B58 766 aa17.94■□□□□ 0.46
SLIRP-209ENST00000557342 C1orf167Q5SNV9 1468 aa17.94■□□□□ 0.46
SLIRP-209ENST00000557342 COL16A1Q07092 1604 aaPredicted RBP17.92■□□□□ 0.46
SLIRP-209ENST00000557342 ADGRB2O60241 1585 aa17.91■□□□□ 0.46
SLIRP-209ENST00000557342 RGPD8O14715 1765 aaPredicted RBP17.9■□□□□ 0.46
SLIRP-209ENST00000557342 SAFB2Q14151 953 aaKnown RBP eCLIP17.9■□□□□ 0.46
SLIRP-209ENST00000557342 CLSPNQ9HAW4 1339 aa17.9■□□□□ 0.46
SLIRP-209ENST00000557342 NBPF1Q3BBV0 1214 aa17.89■□□□□ 0.45
SLIRP-209ENST00000557342 DISP3Q9P2K9 1392 aa17.88■□□□□ 0.45
SLIRP-209ENST00000557342 KIF1AQ12756 1690 aa17.87■□□□□ 0.45
SLIRP-209ENST00000557342 MED1Q15648 1581 aaPredicted RBP17.87■□□□□ 0.45
SLIRP-209ENST00000557342 SHPRHQ149N8 1683 aa17.87■□□□□ 0.45
SLIRP-209ENST00000557342 ESCO1Q5FWF5 840 aa17.86■□□□□ 0.45
SLIRP-209ENST00000557342 ORAI2Q96SN7 254 aa17.86■□□□□ 0.45
SLIRP-209ENST00000557342 EIF3AQ14152 1382 aaKnown RBP17.86■□□□□ 0.45
SLIRP-209ENST00000557342 JCADQ9P266 1359 aa17.86■□□□□ 0.45
SLIRP-209ENST00000557342 ROCK2O75116 1388 aaKnown RBP17.85■□□□□ 0.45
SLIRP-209ENST00000557342 MINK1Q8N4C8 1332 aaPredicted RBP17.84■□□□□ 0.45
SLIRP-209ENST00000557342 NUTM2FA1L443 756 aa17.84■□□□□ 0.45
SLIRP-209ENST00000557342 QRICH2Q9H0J4 1663 aa17.83■□□□□ 0.45
SLIRP-209ENST00000557342 ANKARQ7Z5J8 1434 aa17.83■□□□□ 0.45
SLIRP-209ENST00000557342 NPHP3Q7Z494 1330 aa17.82■□□□□ 0.44
SLIRP-209ENST00000557342 ITSN1Q15811 1721 aa17.82■□□□□ 0.44
SLIRP-209ENST00000557342 NBPF8Q3BBV2 869 aa17.82■□□□□ 0.44
SLIRP-209ENST00000557342 LRRC59Q96AG4 307 aaKnown RBP17.82■□□□□ 0.44
SLIRP-209ENST00000557342 HIRIP3Q9BW71 556 aaPredicted RBP17.82■□□□□ 0.44
SLIRP-209ENST00000557342 USP32Q8NFA0 1604 aa17.82■□□□□ 0.44
SLIRP-209ENST00000557342 WASLO00401 505 aaPredicted RBP17.81■□□□□ 0.44
SLIRP-209ENST00000557342 TULP4Q9NRJ4 1543 aa17.81■□□□□ 0.44
SLIRP-209ENST00000557342 CENPJQ9HC77 1338 aaPredicted RBP17.8■□□□□ 0.44
SLIRP-209ENST00000557342 CCER1Q8TC90 406 aaPredicted RBP17.8■□□□□ 0.44
SLIRP-209ENST00000557342 DDX17Q92841 729 aaKnown RBP17.8■□□□□ 0.44
SLIRP-209ENST00000557342 TIMELESSQ9UNS1 1208 aa17.8■□□□□ 0.44
SLIRP-209ENST00000557342 RALGAPBQ86X10 1494 aa17.8■□□□□ 0.44
SLIRP-209ENST00000557342 GPRASP1Q5JY77 1395 aa17.79■□□□□ 0.44
SLIRP-209ENST00000557342 SOS2Q07890 1332 aaPredicted RBP17.79■□□□□ 0.44
SLIRP-209ENST00000557342 SPATA31A6Q5VVP1 1343 aa17.79■□□□□ 0.44
SLIRP-209ENST00000557342 SOCS7O14512 581 aa17.78■□□□□ 0.44
SLIRP-209ENST00000557342 PHF8Q9UPP1 1060 aa17.78■□□□□ 0.44
SLIRP-209ENST00000557342 FOXO3O43524 673 aa17.77■□□□□ 0.44
SLIRP-209ENST00000557342 CARD11Q9BXL7 1154 aa17.76■□□□□ 0.43
SLIRP-209ENST00000557342 PXDNQ92626 1479 aa17.75■□□□□ 0.43
SLIRP-209ENST00000557342 PHF23Q9BUL5 403 aaPredicted RBP17.75■□□□□ 0.43
SLIRP-209ENST00000557342 CDK19Q9BWU1 502 aa17.75■□□□□ 0.43
SLIRP-209ENST00000557342 COL22A1Q8NFW1 1626 aaPredicted RBP17.73■□□□□ 0.43
SLIRP-209ENST00000557342 PSME1Q06323 249 aa17.73■□□□□ 0.43
SLIRP-209ENST00000557342 PNPLA6Q8IY17 1366 aa17.73■□□□□ 0.43
SLIRP-209ENST00000557342 ATP7BP35670 1465 aa17.73■□□□□ 0.43
SLIRP-209ENST00000557342 TOPAZ1Q8N9V7 1692 aa17.73■□□□□ 0.43
SLIRP-209ENST00000557342 PRR36Q9H6K5 1346 aa17.72■□□□□ 0.43
SLIRP-209ENST00000557342 NUDT16Q96DE0 195 aaKnown RBP17.72■□□□□ 0.43
SLIRP-209ENST00000557342 KRT28Q7Z3Y7 464 aa17.71■□□□□ 0.43
SLIRP-209ENST00000557342 PMFBP1Q8TBY8 1022 aa17.71■□□□□ 0.43
SLIRP-209ENST00000557342 SRPK2P78362 688 aaKnown RBP17.7■□□□□ 0.42
SLIRP-209ENST00000557342 XPCQ01831 940 aaPredicted RBP17.7■□□□□ 0.42
SLIRP-209ENST00000557342 EVC2Q86UK5 1308 aa17.7■□□□□ 0.42
SLIRP-209ENST00000557342 LRP6O75581 1613 aa17.69■□□□□ 0.42
SLIRP-209ENST00000557342 MEX3CQ5U5Q3 659 aaKnown RBP17.69■□□□□ 0.42
SLIRP-209ENST00000557342 CCDC61Q9Y6R9 512 aa17.69■□□□□ 0.42
SLIRP-209ENST00000557342 SBNO1A3KN83 1393 aa17.68■□□□□ 0.42
SLIRP-209ENST00000557342 SBNO2Q9Y2G9 1366 aa17.68■□□□□ 0.42
SLIRP-209ENST00000557342 NUTM2BA6NNL0 878 aaPredicted RBP17.68■□□□□ 0.42
SLIRP-209ENST00000557342 NUTM2EB1AL46 878 aaPredicted RBP17.68■□□□□ 0.42
SLIRP-209ENST00000557342 NUTM2AQ8IVF1 878 aaPredicted RBP17.68■□□□□ 0.42
SLIRP-209ENST00000557342 NGDNQ8NEJ9 315 aaKnown RBP17.68■□□□□ 0.42
SLIRP-209ENST00000557342 TRPM3Q9HCF6 1732 aaPredicted RBP17.68■□□□□ 0.42
SLIRP-209ENST00000557342 SPATA31A3Q5VYP0 1347 aa17.68■□□□□ 0.42
SLIRP-209ENST00000557342 MARF1Q9Y4F3 1742 aaKnown RBP17.67■□□□□ 0.42
SLIRP-209ENST00000557342 TNS3Q68CZ2 1445 aa17.66■□□□□ 0.42
SLIRP-209ENST00000557342 CABP2Q9NPB3 220 aa17.66■□□□□ 0.42
SLIRP-209ENST00000557342 ALS2Q96Q42 1657 aa17.64■□□□□ 0.42
SLIRP-209ENST00000557342 PLEKHG3A1L390 1219 aa17.64■□□□□ 0.41
SLIRP-209ENST00000557342 SLC24A1O60721 1099 aa17.64■□□□□ 0.41
SLIRP-209ENST00000557342 POLR3AO14802 1390 aaPredicted RBP17.64■□□□□ 0.41
SLIRP-209ENST00000557342 ARHGEF10O15013 1369 aa17.64■□□□□ 0.41
SLIRP-209ENST00000557342 PPIP5K1Q6PFW1 1433 aa17.64■□□□□ 0.41
SLIRP-209ENST00000557342 ACEP12821 1306 aa17.62■□□□□ 0.41
SLIRP-209ENST00000557342 LMOD2Q6P5Q4 547 aa17.61■□□□□ 0.41
SLIRP-209ENST00000557342 ATAD2Q6PL18 1390 aa17.61■□□□□ 0.41
SLIRP-209ENST00000557342 ABCA3Q99758 1704 aa17.61■□□□□ 0.41
SLIRP-209ENST00000557342 RGS17Q9UGC6 210 aaPredicted RBP17.6■□□□□ 0.41
SLIRP-209ENST00000557342 AKAP12Q02952 1782 aa17.59■□□□□ 0.41
SLIRP-209ENST00000557342 USP47Q96K76 1375 aa17.59■□□□□ 0.41
SLIRP-209ENST00000557342 ST20-MTHFSA0A0A6YYL1 179 aa17.59■□□□□ 0.41
SLIRP-209ENST00000557342 PAK3O75914 559 aaPredicted RBP17.59■□□□□ 0.41
SLIRP-209ENST00000557342 ADAMTS2O95450 1211 aa17.59■□□□□ 0.41
SLIRP-209ENST00000557342 ZNF772Q68DY9 489 aaPredicted RBP17.59■□□□□ 0.41
SLIRP-209ENST00000557342 C8orf37Q96NL8 207 aa17.58■□□□□ 0.4
SLIRP-209ENST00000557342 CABP1Q9NZU7 370 aa17.58■□□□□ 0.4
SLIRP-209ENST00000557342 BRD4O60885 1362 aaPredicted RBP17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms