RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 HIRIP3Q9BW71 556 aaPredicted RBP18.13■□□□□ 0.49
SHMT2-227ENST00000557269 MINK1Q8N4C8 1332 aaPredicted RBP18.13■□□□□ 0.49
SHMT2-227ENST00000557269 NCOA3Q9Y6Q9 1424 aa18.13■□□□□ 0.49
SHMT2-227ENST00000557269 ADGRL3Q9HAR2 1447 aa18.12■□□□□ 0.49
SHMT2-227ENST00000557269 C19orf44Q9H6X5 657 aa18.11■□□□□ 0.49
SHMT2-227ENST00000557269 EIF3AQ14152 1382 aaKnown RBP18.11■□□□□ 0.49
SHMT2-227ENST00000557269 QRICH2Q9H0J4 1663 aa18.1■□□□□ 0.49
SHMT2-227ENST00000557269 HSPA5P11021 654 aaKnown RBP18.1■□□□□ 0.49
SHMT2-227ENST00000557269 TESK2Q96S53 571 aa18.09■□□□□ 0.49
SHMT2-227ENST00000557269 MSH6P52701 1360 aa18.08■□□□□ 0.49
SHMT2-227ENST00000557269 EIF4G2P78344 907 aaKnown RBP eCLIP18.08■□□□□ 0.48
SHMT2-227ENST00000557269 ADGRB2O60241 1585 aa18.06■□□□□ 0.48
SHMT2-227ENST00000557269 TULP4Q9NRJ4 1543 aa18.05■□□□□ 0.48
SHMT2-227ENST00000557269 WASLO00401 505 aaPredicted RBP18.05■□□□□ 0.48
SHMT2-227ENST00000557269 IQSEC2Q5JU85 1478 aa18.05■□□□□ 0.48
SHMT2-227ENST00000557269 CDC42BPGQ6DT37 1551 aa18.04■□□□□ 0.48
SHMT2-227ENST00000557269 NUTM2FA1L443 756 aa18.04■□□□□ 0.48
SHMT2-227ENST00000557269 ATF3P18847 181 aa18.04■□□□□ 0.48
SHMT2-227ENST00000557269 CDK19Q9BWU1 502 aa18.04■□□□□ 0.48
SHMT2-227ENST00000557269 SBNO2Q9Y2G9 1366 aa18.04■□□□□ 0.48
SHMT2-227ENST00000557269 DCCP43146 1447 aa18.03■□□□□ 0.48
SHMT2-227ENST00000557269 MST1RQ04912 1400 aa18.02■□□□□ 0.48
SHMT2-227ENST00000557269 CADPS2Q86UW7 1296 aa18.02■□□□□ 0.48
SHMT2-227ENST00000557269 PRR36Q9H6K5 1346 aa18.01■□□□□ 0.47
SHMT2-227ENST00000557269 FMN2Q9NZ56 1722 aa18.01■□□□□ 0.47
SHMT2-227ENST00000557269 CABP2Q9NPB3 220 aa18.01■□□□□ 0.47
SHMT2-227ENST00000557269 DISP3Q9P2K9 1392 aa18.01■□□□□ 0.47
SHMT2-227ENST00000557269 C11orf95C9JLR9 678 aaPredicted RBP18■□□□□ 0.47
SHMT2-227ENST00000557269 SLAIN2Q9P270 581 aa18■□□□□ 0.47
SHMT2-227ENST00000557269 EVC2Q86UK5 1308 aa17.99■□□□□ 0.47
SHMT2-227ENST00000557269 USP32Q8NFA0 1604 aa17.99■□□□□ 0.47
SHMT2-227ENST00000557269 UBAP1LF5GYI3 381 aa17.99■□□□□ 0.47
SHMT2-227ENST00000557269 SRPK2P78362 688 aaKnown RBP17.98■□□□□ 0.47
SHMT2-227ENST00000557269 C1orf167Q5SNV9 1468 aa17.98■□□□□ 0.47
SHMT2-227ENST00000557269 TOM1O60784 492 aa17.97■□□□□ 0.47
SHMT2-227ENST00000557269 NUDT16Q96DE0 195 aaKnown RBP17.97■□□□□ 0.47
SHMT2-227ENST00000557269 ORAI2Q96SN7 254 aa17.97■□□□□ 0.47
SHMT2-227ENST00000557269 TMF1P82094 1093 aa17.96■□□□□ 0.47
SHMT2-227ENST00000557269 RGPD8O14715 1765 aaPredicted RBP17.96■□□□□ 0.47
SHMT2-227ENST00000557269 ATP7BP35670 1465 aa17.95■□□□□ 0.46
SHMT2-227ENST00000557269 PIP4K2BP78356 416 aa17.95■□□□□ 0.46
SHMT2-227ENST00000557269 ANKARQ7Z5J8 1434 aa17.94■□□□□ 0.46
SHMT2-227ENST00000557269 ESCO1Q5FWF5 840 aa17.93■□□□□ 0.46
SHMT2-227ENST00000557269 BRINP3Q76B58 766 aa17.93■□□□□ 0.46
SHMT2-227ENST00000557269 SLC24A1O60721 1099 aa17.92■□□□□ 0.46
SHMT2-227ENST00000557269 PMFBP1Q8TBY8 1022 aa17.91■□□□□ 0.46
SHMT2-227ENST00000557269 DDX17Q92841 729 aaKnown RBP17.91■□□□□ 0.46
SHMT2-227ENST00000557269 CCDC61Q9Y6R9 512 aa17.91■□□□□ 0.46
SHMT2-227ENST00000557269 SCAF1Q9H7N4 1312 aaKnown RBP17.91■□□□□ 0.46
SHMT2-227ENST00000557269 TOPAZ1Q8N9V7 1692 aa17.9■□□□□ 0.46
SHMT2-227ENST00000557269 PUS7Q96PZ0 661 aaKnown RBP17.9■□□□□ 0.46
SHMT2-227ENST00000557269 CABP1Q9NZU7 370 aa17.9■□□□□ 0.46
SHMT2-227ENST00000557269 ROBO1Q9Y6N7 1651 aa17.9■□□□□ 0.46
SHMT2-227ENST00000557269 PHF8Q9UPP1 1060 aa17.89■□□□□ 0.45
SHMT2-227ENST00000557269 KIF7Q2M1P5 1343 aa17.89■□□□□ 0.45
SHMT2-227ENST00000557269 PPIP5K1Q6PFW1 1433 aa17.89■□□□□ 0.45
SHMT2-227ENST00000557269 POLR3GLQ9BT43 218 aa17.88■□□□□ 0.45
SHMT2-227ENST00000557269 SLC12A5Q9H2X9 1139 aa17.88■□□□□ 0.45
SHMT2-227ENST00000557269 ATAD2Q6PL18 1390 aa17.88■□□□□ 0.45
SHMT2-227ENST00000557269 PLEKHG3A1L390 1219 aa17.87■□□□□ 0.45
SHMT2-227ENST00000557269 FOXO3O43524 673 aa17.87■□□□□ 0.45
SHMT2-227ENST00000557269 WASHC2AQ641Q2 1341 aa17.87■□□□□ 0.45
SHMT2-227ENST00000557269 CDCA8Q53HL2 280 aa17.86■□□□□ 0.45
SHMT2-227ENST00000557269 TMC1Q8TDI8 760 aa17.86■□□□□ 0.45
SHMT2-227ENST00000557269 XPCQ01831 940 aaPredicted RBP17.85■□□□□ 0.45
SHMT2-227ENST00000557269 ITSN1Q15811 1721 aa17.85■□□□□ 0.45
SHMT2-227ENST00000557269 CCDC7Q96M83 1385 aa17.85■□□□□ 0.45
SHMT2-227ENST00000557269 CD163L1Q9NR16 1453 aa17.84■□□□□ 0.45
SHMT2-227ENST00000557269 ACEP12821 1306 aa17.84■□□□□ 0.45
SHMT2-227ENST00000557269 KIF1AQ12756 1690 aa17.83■□□□□ 0.45
SHMT2-227ENST00000557269 POLR3AO14802 1390 aaPredicted RBP17.83■□□□□ 0.45
SHMT2-227ENST00000557269 NGDNQ8NEJ9 315 aaKnown RBP17.83■□□□□ 0.44
SHMT2-227ENST00000557269 FBXO41Q8TF61 875 aa17.83■□□□□ 0.44
SHMT2-227ENST00000557269 MYOM1P52179 1685 aa17.83■□□□□ 0.44
SHMT2-227ENST00000557269 NHSL1Q5SYE7 1610 aa17.82■□□□□ 0.44
SHMT2-227ENST00000557269 CPSF1Q10570 1443 aaKnown RBP17.81■□□□□ 0.44
SHMT2-227ENST00000557269 AHDC1Q5TGY3 1603 aaPredicted RBP17.8■□□□□ 0.44
SHMT2-227ENST00000557269 PSME1Q06323 249 aa17.8■□□□□ 0.44
SHMT2-227ENST00000557269 KRT28Q7Z3Y7 464 aa17.8■□□□□ 0.44
SHMT2-227ENST00000557269 PXDNQ92626 1479 aa17.8■□□□□ 0.44
SHMT2-227ENST00000557269 SOS2Q07890 1332 aaPredicted RBP17.79■□□□□ 0.44
SHMT2-227ENST00000557269 NPHP3Q7Z494 1330 aa17.79■□□□□ 0.44
SHMT2-227ENST00000557269 HSPA1LP34931 641 aa17.79■□□□□ 0.44
SHMT2-227ENST00000557269 A0A1W2PP64 1363 aa17.79■□□□□ 0.44
SHMT2-227ENST00000557269 NINLQ9Y2I6 1382 aa17.79■□□□□ 0.44
SHMT2-227ENST00000557269 ZNF316A6NFI3 1004 aaPredicted RBP17.77■□□□□ 0.44
SHMT2-227ENST00000557269 PHLPP1O60346 1717 aa17.77■□□□□ 0.44
SHMT2-227ENST00000557269 AKAP12Q02952 1782 aa17.76■□□□□ 0.43
SHMT2-227ENST00000557269 USP6P35125 1406 aa17.76■□□□□ 0.43
SHMT2-227ENST00000557269 CARD14Q9BXL6 1004 aa17.76■□□□□ 0.43
SHMT2-227ENST00000557269 TERF2IPQ9NYB0 399 aa17.76■□□□□ 0.43
SHMT2-227ENST00000557269 KTN1Q86UP2 1357 aaKnown RBP17.76■□□□□ 0.43
SHMT2-227ENST00000557269 ANKRD36BQ8N2N9 1353 aa17.76■□□□□ 0.43
SHMT2-227ENST00000557269 COL16A1Q07092 1604 aaPredicted RBP17.76■□□□□ 0.43
SHMT2-227ENST00000557269 SSH2Q76I76 1423 aa17.75■□□□□ 0.43
SHMT2-227ENST00000557269 HDGFL2Q7Z4V5 671 aaPredicted RBP17.75■□□□□ 0.43
SHMT2-227ENST00000557269 ZNF692Q9BU19 519 aaPredicted RBP17.75■□□□□ 0.43
SHMT2-227ENST00000557269 PANK3Q9H999 370 aa17.75■□□□□ 0.43
SHMT2-227ENST00000557269 TRPM3Q9HCF6 1732 aaPredicted RBP17.75■□□□□ 0.43
SHMT2-227ENST00000557269 MON2Q7Z3U7 1717 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms