RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 ATXN8OSP0DMR3 200 aa14.38□□□□□ -0.11
SYNE2-224ENST00000557024 ZNF326Q5BKZ1 582 aaKnown RBP14.38□□□□□ -0.11
SYNE2-224ENST00000557024 FNBP4Q8N3X1 1017 aaPredicted RBP14.38□□□□□ -0.11
SYNE2-224ENST00000557024 ATRNO75882 1429 aa14.38□□□□□ -0.11
SYNE2-224ENST00000557024 EP400Q96L91 3159 aa14.37□□□□□ -0.11
SYNE2-224ENST00000557024 ORAI2Q96SN7 254 aa14.37□□□□□ -0.11
SYNE2-224ENST00000557024 SOS2Q07890 1332 aaPredicted RBP14.37□□□□□ -0.11
SYNE2-224ENST00000557024 NUP155O75694 1391 aa14.36□□□□□ -0.11
SYNE2-224ENST00000557024 PTCH1Q13635 1447 aa14.36□□□□□ -0.11
SYNE2-224ENST00000557024 NALCNQ8IZF0 1738 aa14.35□□□□□ -0.11
SYNE2-224ENST00000557024 IQGAP3Q86VI3 1631 aa14.35□□□□□ -0.11
SYNE2-224ENST00000557024 CCDC125Q86Z20 511 aa14.35□□□□□ -0.11
SYNE2-224ENST00000557024 BCL9LQ86UU0 1499 aa14.31□□□□□ -0.12
SYNE2-224ENST00000557024 LAMC1P11047 1609 aa14.31□□□□□ -0.12
SYNE2-224ENST00000557024 ROCK1Q13464 1354 aa14.31□□□□□ -0.12
SYNE2-224ENST00000557024 ROBO2Q9HCK4 1378 aa14.31□□□□□ -0.12
SYNE2-224ENST00000557024 MYOM2P54296 1465 aa14.31□□□□□ -0.12
SYNE2-224ENST00000557024 GJD4Q96KN9 370 aaPredicted RBP14.3□□□□□ -0.12
SYNE2-224ENST00000557024 U3KPZ7 1027 aaPredicted RBP14.3□□□□□ -0.12
SYNE2-224ENST00000557024 BLMP54132 1417 aaPredicted RBP14.28□□□□□ -0.12
SYNE2-224ENST00000557024 XPCQ01831 940 aaPredicted RBP14.28□□□□□ -0.12
SYNE2-224ENST00000557024 NEXMIFQ5QGS0 1516 aa14.28□□□□□ -0.12
SYNE2-224ENST00000557024 DEFB132Q7Z7B7 95 aa14.28□□□□□ -0.12
SYNE2-224ENST00000557024 COL22A1Q8NFW1 1626 aaPredicted RBP14.27□□□□□ -0.12
SYNE2-224ENST00000557024 ITGAEP38570 1179 aa14.27□□□□□ -0.13
SYNE2-224ENST00000557024 ESCO1Q5FWF5 840 aa14.27□□□□□ -0.13
SYNE2-224ENST00000557024 NPHP3Q7Z494 1330 aa14.26□□□□□ -0.13
SYNE2-224ENST00000557024 FOXO3O43524 673 aa14.25□□□□□ -0.13
SYNE2-224ENST00000557024 ATF5Q9Y2D1 282 aaPredicted RBP14.25□□□□□ -0.13
SYNE2-224ENST00000557024 RALGAPBQ86X10 1494 aa14.25□□□□□ -0.13
SYNE2-224ENST00000557024 PXDNQ92626 1479 aa14.25□□□□□ -0.13
SYNE2-224ENST00000557024 SPHKAPQ2M3C7 1700 aa14.24□□□□□ -0.13
SYNE2-224ENST00000557024 SF3B2Q13435 895 aaKnown RBP14.23□□□□□ -0.13
SYNE2-224ENST00000557024 UNC5CLQ8IV45 518 aa14.23□□□□□ -0.13
SYNE2-224ENST00000557024 HFM1A2PYH4 1435 aa14.23□□□□□ -0.13
SYNE2-224ENST00000557024 CLTCL1P53675 1640 aa14.23□□□□□ -0.13
SYNE2-224ENST00000557024 VGFO15240 615 aaPredicted RBP14.22□□□□□ -0.13
SYNE2-224ENST00000557024 PRAG1Q86YV5 1406 aa14.22□□□□□ -0.13
SYNE2-224ENST00000557024 GLI3P10071 1580 aa14.22□□□□□ -0.13
SYNE2-224ENST00000557024 NUTM2FA1L443 756 aa14.2□□□□□ -0.14
SYNE2-224ENST00000557024 PSDA5PKW4 1024 aaPredicted RBP14.2□□□□□ -0.14
SYNE2-224ENST00000557024 SEPT12Q8IYM1 358 aa14.2□□□□□ -0.14
SYNE2-224ENST00000557024 SLIT2O94813 1529 aa14.2□□□□□ -0.14
SYNE2-224ENST00000557024 LRPPRCP42704 1394 aaKnown RBP14.19□□□□□ -0.14
SYNE2-224ENST00000557024 CDC42BPGQ6DT37 1551 aa14.18□□□□□ -0.14
SYNE2-224ENST00000557024 LRP5O75197 1615 aa14.18□□□□□ -0.14
SYNE2-224ENST00000557024 NAIPQ13075 1403 aa14.16□□□□□ -0.14
SYNE2-224ENST00000557024 MARF1Q9Y4F3 1742 aaKnown RBP14.16□□□□□ -0.14
SYNE2-224ENST00000557024 PLEKHG5O94827 1062 aa14.16□□□□□ -0.14
SYNE2-224ENST00000557024 HRCP23327 699 aa14.16□□□□□ -0.14
SYNE2-224ENST00000557024 CCDC9Q9Y3X0 531 aaKnown RBP14.16□□□□□ -0.14
SYNE2-224ENST00000557024 SPATA31A3Q5VYP0 1347 aa14.15□□□□□ -0.14
SYNE2-224ENST00000557024 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.15□□□□□ -0.14
SYNE2-224ENST00000557024 HAP1P54257 671 aaPredicted RBP14.15□□□□□ -0.14
SYNE2-224ENST00000557024 VPS72Q15906 364 aa14.15□□□□□ -0.14
SYNE2-224ENST00000557024 SAMD1Q6SPF0 538 aaPredicted RBP14.15□□□□□ -0.14
SYNE2-224ENST00000557024 KRT27Q7Z3Y8 459 aa14.15□□□□□ -0.14
SYNE2-224ENST00000557024 STK26Q9P289 416 aa14.15□□□□□ -0.14
SYNE2-224ENST00000557024 CAPN15O75808 1086 aa14.14□□□□□ -0.15
SYNE2-224ENST00000557024 WAPLQ7Z5K2 1190 aa14.14□□□□□ -0.15
SYNE2-224ENST00000557024 CABLES1Q8TDN4 633 aa14.14□□□□□ -0.15
SYNE2-224ENST00000557024 RPGRIP1LQ68CZ1 1315 aa14.14□□□□□ -0.15
SYNE2-224ENST00000557024 A0A0G2JS52 829 aa14.13□□□□□ -0.15
SYNE2-224ENST00000557024 BAG6P46379 1132 aa14.13□□□□□ -0.15
SYNE2-224ENST00000557024 MYT1Q01538 1121 aa14.13□□□□□ -0.15
SYNE2-224ENST00000557024 CCDC144AA2RUR9 1427 aa14.13□□□□□ -0.15
SYNE2-224ENST00000557024 USP32Q8NFA0 1604 aa14.12□□□□□ -0.15
SYNE2-224ENST00000557024 ONECUT3O60422 494 aaPredicted RBP14.12□□□□□ -0.15
SYNE2-224ENST00000557024 KRT28Q7Z3Y7 464 aa14.12□□□□□ -0.15
SYNE2-224ENST00000557024 BRWD3Q6RI45 1802 aa14.11□□□□□ -0.15
SYNE2-224ENST00000557024 SPINK5Q9NQ38 1064 aaPredicted RBP14.11□□□□□ -0.15
SYNE2-224ENST00000557024 KIF1BO60333 1816 aa14.11□□□□□ -0.15
SYNE2-224ENST00000557024 PLEKHH1Q9ULM0 1364 aa14.1□□□□□ -0.15
SYNE2-224ENST00000557024 TNS3Q68CZ2 1445 aa14.09□□□□□ -0.15
SYNE2-224ENST00000557024 EN1Q05925 392 aaPredicted RBP14.09□□□□□ -0.15
SYNE2-224ENST00000557024 R3HDM1Q15032 1099 aaKnown RBP14.09□□□□□ -0.15
SYNE2-224ENST00000557024 ADGRF5Q8IZF2 1346 aa14.09□□□□□ -0.15
SYNE2-224ENST00000557024 TECPR2O15040 1411 aa14.08□□□□□ -0.15
SYNE2-224ENST00000557024 FAM98CQ17RN3 349 aaKnown RBP14.08□□□□□ -0.16
SYNE2-224ENST00000557024 LMOD2Q6P5Q4 547 aa14.08□□□□□ -0.16
SYNE2-224ENST00000557024 PPARGC1BQ86YN6 1023 aaKnown RBP14.08□□□□□ -0.16
SYNE2-224ENST00000557024 TMEM132EQ6IEE7 984 aa14.07□□□□□ -0.16
SYNE2-224ENST00000557024 FAM83GA6ND36 823 aa14.06□□□□□ -0.16
SYNE2-224ENST00000557024 PSME1Q06323 249 aa14.06□□□□□ -0.16
SYNE2-224ENST00000557024 FAM182BQ5T319 152 aa14.06□□□□□ -0.16
SYNE2-224ENST00000557024 PHF8Q9UPP1 1060 aa14.06□□□□□ -0.16
SYNE2-224ENST00000557024 KIF1AQ12756 1690 aa14.05□□□□□ -0.16
SYNE2-224ENST00000557024 ABCC11Q96J66 1382 aa14.05□□□□□ -0.16
SYNE2-224ENST00000557024 RRBP1Q9P2E9 1410 aaKnown RBP14.05□□□□□ -0.16
SYNE2-224ENST00000557024 PLCH1Q4KWH8 1693 aa14.04□□□□□ -0.16
SYNE2-224ENST00000557024 PPLO60437 1756 aa14.04□□□□□ -0.16
SYNE2-224ENST00000557024 FKBP8Q14318 412 aa14.04□□□□□ -0.16
SYNE2-224ENST00000557024 RGL3Q3MIN7 710 aa14.04□□□□□ -0.16
SYNE2-224ENST00000557024 FMN2Q9NZ56 1722 aa14.04□□□□□ -0.16
SYNE2-224ENST00000557024 BTG4Q9NY30 223 aa14.03□□□□□ -0.16
SYNE2-224ENST00000557024 SBNO1A3KN83 1393 aa14.03□□□□□ -0.16
SYNE2-224ENST00000557024 ARHGEF10O15013 1369 aa14.03□□□□□ -0.16
SYNE2-224ENST00000557024 NWD2Q9ULI1 1742 aa14.02□□□□□ -0.16
SYNE2-224ENST00000557024 YTHDC2Q9H6S0 1430 aaKnown RBP14.01□□□□□ -0.17
SYNE2-224ENST00000557024 YY1P25490 414 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 85.9 ms