RNA–Protein interactions for RNA: ENST00000556725.1

SYNE2-222, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 3

Gene SYNE2, Length 672 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-222	ENST00000556725	LRRC59	Q96AG4	307 aa	Known RBP	13.41	□□□□□ -0.26
SYNE2-222	ENST00000556725	FOXD4L1	Q9NU39	408 aa		13.41	□□□□□ -0.26
SYNE2-222	ENST00000556725	UNC13B	O14795	1591 aa		13.41	□□□□□ -0.26
SYNE2-222	ENST00000556725	RGS12	O14924	1447 aa		13.4	□□□□□ -0.26
SYNE2-222	ENST00000556725	NHSL1	Q5SYE7	1610 aa		13.4	□□□□□ -0.26
SYNE2-222	ENST00000556725	RBM6	P78332	1123 aa	Known RBP	13.4	□□□□□ -0.26
SYNE2-222	ENST00000556725	MET	P08581	1390 aa		13.39	□□□□□ -0.27
SYNE2-222	ENST00000556725	NRXN3	Q9Y4C0	1643 aa		13.39	□□□□□ -0.27
SYNE2-222	ENST00000556725	DCC	P43146	1447 aa		13.39	□□□□□ -0.27
SYNE2-222	ENST00000556725	PNPLA6	Q8IY17	1366 aa		13.38	□□□□□ -0.27
SYNE2-222	ENST00000556725	ADAMTS2	O95450	1211 aa		13.38	□□□□□ -0.27
SYNE2-222	ENST00000556725	XRN1	Q8IZH2	1706 aa	Known RBP	13.38	□□□□□ -0.27
SYNE2-222	ENST00000556725	NGLY1	Q96IV0	654 aa		13.37	□□□□□ -0.27
SYNE2-222	ENST00000556725	IQGAP3	Q86VI3	1631 aa		13.35	□□□□□ -0.27
SYNE2-222	ENST00000556725	NUP155	O75694	1391 aa		13.35	□□□□□ -0.27
SYNE2-222	ENST00000556725	ZNF326	Q5BKZ1	582 aa	Known RBP	13.35	□□□□□ -0.27
SYNE2-222	ENST00000556725	SETBP1	Q9Y6X0	1596 aa		13.34	□□□□□ -0.27
SYNE2-222	ENST00000556725	NALCN	Q8IZF0	1738 aa		13.33	□□□□□ -0.28
SYNE2-222	ENST00000556725	ADGRL3	Q9HAR2	1447 aa		13.32	□□□□□ -0.28
SYNE2-222	ENST00000556725	C1orf167	Q5SNV9	1468 aa		13.32	□□□□□ -0.28
SYNE2-222	ENST00000556725	ORAI2	Q96SN7	254 aa		13.32	□□□□□ -0.28
SYNE2-222	ENST00000556725	USP21	Q9UK80	565 aa		13.32	□□□□□ -0.28
SYNE2-222	ENST00000556725	ITGAE	P38570	1179 aa		13.31	□□□□□ -0.28
SYNE2-222	ENST00000556725	ROCK1	Q13464	1354 aa		13.31	□□□□□ -0.28
SYNE2-222	ENST00000556725	EP400	Q96L91	3159 aa		13.3	□□□□□ -0.28
SYNE2-222	ENST00000556725	SOS2	Q07890	1332 aa	Predicted RBP	13.3	□□□□□ -0.28
SYNE2-222	ENST00000556725	ATAD2	Q6PL18	1390 aa		13.3	□□□□□ -0.28
SYNE2-222	ENST00000556725	FNBP4	Q8N3X1	1017 aa	Predicted RBP	13.29	□□□□□ -0.28
SYNE2-222	ENST00000556725	TRPC5	Q9UL62	973 aa	Predicted RBP	13.29	□□□□□ -0.28
SYNE2-222	ENST00000556725	SPHKAP	Q2M3C7	1700 aa		13.28	□□□□□ -0.28
SYNE2-222	ENST00000556725	ZRANB1	Q9UGI0	708 aa		13.27	□□□□□ -0.29
SYNE2-222	ENST00000556725	NEXMIF	Q5QGS0	1516 aa		13.27	□□□□□ -0.29
SYNE2-222	ENST00000556725	ATRN	O75882	1429 aa		13.26	□□□□□ -0.29
SYNE2-222	ENST00000556725	LAMC1	P11047	1609 aa		13.26	□□□□□ -0.29
SYNE2-222	ENST00000556725	ROBO2	Q9HCK4	1378 aa		13.26	□□□□□ -0.29
SYNE2-222	ENST00000556725	CLTCL1	P53675	1640 aa		13.24	□□□□□ -0.29
SYNE2-222	ENST00000556725	SPDYE2B	A6NHP3	402 aa		13.24	□□□□□ -0.29
SYNE2-222	ENST00000556725	SPDYE6	P0CI01	402 aa		13.24	□□□□□ -0.29
SYNE2-222	ENST00000556725	SPDYE2	Q495Y8	402 aa		13.24	□□□□□ -0.29
SYNE2-222	ENST00000556725	PTCH1	Q13635	1447 aa		13.23	□□□□□ -0.29
SYNE2-222	ENST00000556725	BCL9L	Q86UU0	1499 aa		13.23	□□□□□ -0.29
SYNE2-222	ENST00000556725	XPC	Q01831	940 aa	Predicted RBP	13.22	□□□□□ -0.29
SYNE2-222	ENST00000556725	PPARGC1B	Q86YN6	1023 aa	Known RBP	13.22	□□□□□ -0.29
SYNE2-222	ENST00000556725	ESCO1	Q5FWF5	840 aa		13.21	□□□□□ -0.29
SYNE2-222	ENST00000556725	GJD4	Q96KN9	370 aa	Predicted RBP	13.21	□□□□□ -0.29
SYNE2-222	ENST00000556725	MYOM2	P54296	1465 aa		13.21	□□□□□ -0.3
SYNE2-222	ENST00000556725	COL22A1	Q8NFW1	1626 aa	Predicted RBP	13.21	□□□□□ -0.3
SYNE2-222	ENST00000556725	KIF1B	O60333	1816 aa		13.2	□□□□□ -0.3
SYNE2-222	ENST00000556725	VGF	O15240	615 aa	Predicted RBP	13.2	□□□□□ -0.3
SYNE2-222	ENST00000556725	FOXO3	O43524	673 aa		13.2	□□□□□ -0.3
SYNE2-222	ENST00000556725	PRKAR2A	P13861	404 aa	Known RBP	13.2	□□□□□ -0.3
SYNE2-222	ENST00000556725	CCDC125	Q86Z20	511 aa		13.2	□□□□□ -0.3
SYNE2-222	ENST00000556725	NUTM2F	A1L443	756 aa		13.19	□□□□□ -0.3
SYNE2-222	ENST00000556725	C19orf67	A6NJJ6	358 aa		13.19	□□□□□ -0.3
SYNE2-222	ENST00000556725	NPHP3	Q7Z494	1330 aa		13.18	□□□□□ -0.3
SYNE2-222	ENST00000556725	MARF1	Q9Y4F3	1742 aa	Known RBP	13.18	□□□□□ -0.3
SYNE2-222	ENST00000556725	PXDN	Q92626	1479 aa		13.17	□□□□□ -0.3
SYNE2-222	ENST00000556725	DEFB132	Q7Z7B7	95 aa		13.17	□□□□□ -0.3
SYNE2-222	ENST00000556725	HFM1	A2PYH4	1435 aa		13.16	□□□□□ -0.3
SYNE2-222	ENST00000556725	ZBTB22	O15209	634 aa		13.16	□□□□□ -0.3
SYNE2-222	ENST00000556725	WAPL	Q7Z5K2	1190 aa		13.16	□□□□□ -0.3
SYNE2-222	ENST00000556725	PRAG1	Q86YV5	1406 aa		13.15	□□□□□ -0.3
SYNE2-222	ENST00000556725	UNC5CL	Q8IV45	518 aa		13.15	□□□□□ -0.3
SYNE2-222	ENST00000556725	GLI3	P10071	1580 aa		13.15	□□□□□ -0.3
SYNE2-222	ENST00000556725	BRWD3	Q6RI45	1802 aa		13.14	□□□□□ -0.31
SYNE2-222	ENST00000556725	STK26	Q9P289	416 aa		13.14	□□□□□ -0.31
SYNE2-222	ENST00000556725	RALGAPB	Q86X10	1494 aa		13.14	□□□□□ -0.31
SYNE2-222	ENST00000556725	RPGRIP1L	Q68CZ1	1315 aa		13.13	□□□□□ -0.31
SYNE2-222	ENST00000556725	SPDYE1	Q8NFV5	336 aa	Predicted RBP	13.13	□□□□□ -0.31
SYNE2-222	ENST00000556725	SLIT2	O94813	1529 aa		13.13	□□□□□ -0.31
SYNE2-222	ENST00000556725	BLM	P54132	1417 aa	Predicted RBP	13.13	□□□□□ -0.31
SYNE2-222	ENST00000556725	NAIP	Q13075	1403 aa		13.12	□□□□□ -0.31
SYNE2-222	ENST00000556725	PPL	O60437	1756 aa		13.12	□□□□□ -0.31
SYNE2-222	ENST00000556725	SPATA31A3	Q5VYP0	1347 aa		13.12	□□□□□ -0.31
SYNE2-222	ENST00000556725	ADGRF5	Q8IZF2	1346 aa		13.12	□□□□□ -0.31
SYNE2-222	ENST00000556725	CDC42BPG	Q6DT37	1551 aa		13.11	□□□□□ -0.31
SYNE2-222	ENST00000556725	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	13.11	□□□□□ -0.31
SYNE2-222	ENST00000556725	GABBR2	O75899	941 aa		13.11	□□□□□ -0.31
SYNE2-222	ENST00000556725	PLEKHG5	O94827	1062 aa		13.11	□□□□□ -0.31
SYNE2-222	ENST00000556725	ATXN8OS	P0DMR3	200 aa		13.11	□□□□□ -0.31
SYNE2-222	ENST00000556725	LHX8	Q68G74	356 aa		13.11	□□□□□ -0.31
SYNE2-222	ENST00000556725	SEPT12	Q8IYM1	358 aa		13.11	□□□□□ -0.31
SYNE2-222	ENST00000556725	PLEKHH1	Q9ULM0	1364 aa		13.1	□□□□□ -0.31
SYNE2-222	ENST00000556725	TMEM132E	Q6IEE7	984 aa		13.1	□□□□□ -0.31
SYNE2-222	ENST00000556725	KRT28	Q7Z3Y7	464 aa		13.1	□□□□□ -0.31
SYNE2-222	ENST00000556725	CABLES1	Q8TDN4	633 aa		13.1	□□□□□ -0.31
SYNE2-222	ENST00000556725	LRPPRC	P42704	1394 aa	Known RBP	13.09	□□□□□ -0.31
SYNE2-222	ENST00000556725	SF3B2	Q13435	895 aa	Known RBP	13.08	□□□□□ -0.32
SYNE2-222	ENST00000556725	RGL3	Q3MIN7	710 aa		13.08	□□□□□ -0.32
SYNE2-222	ENST00000556725	PSD	A5PKW4	1024 aa	Predicted RBP	13.07	□□□□□ -0.32
SYNE2-222	ENST00000556725	ONECUT3	O60422	494 aa	Predicted RBP	13.07	□□□□□ -0.32
SYNE2-222	ENST00000556725	VPS72	Q15906	364 aa		13.07	□□□□□ -0.32
SYNE2-222	ENST00000556725	KRT27	Q7Z3Y8	459 aa		13.06	□□□□□ -0.32
SYNE2-222	ENST00000556725	CCDC9	Q9Y3X0	531 aa	Known RBP	13.06	□□□□□ -0.32
SYNE2-222	ENST00000556725	RGPD8	O14715	1765 aa	Predicted RBP	13.06	□□□□□ -0.32
SYNE2-222	ENST00000556725	USP32	Q8NFA0	1604 aa		13.06	□□□□□ -0.32
SYNE2-222	ENST00000556725	TECPR2	O15040	1411 aa		13.05	□□□□□ -0.32
SYNE2-222	ENST00000556725	HAP1	P54257	671 aa	Predicted RBP	13.05	□□□□□ -0.32
SYNE2-222	ENST00000556725	CLEC11A	Q9Y240	323 aa		13.05	□□□□□ -0.32
SYNE2-222	ENST00000556725	ABCC11	Q96J66	1382 aa		13.05	□□□□□ -0.32

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