RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	PRAG1	Q86YV5	1406 aa		19.07	■□□□□ 0.64
SHMT2-223	ENST00000556689	LAMC1	P11047	1609 aa		19.07	■□□□□ 0.64
SHMT2-223	ENST00000556689	FOXO3	O43524	673 aa		19.06	■□□□□ 0.64
SHMT2-223	ENST00000556689	RRBP1	Q9P2E9	1410 aa	Known RBP	19.06	■□□□□ 0.64
SHMT2-223	ENST00000556689	SRCAP	Q6ZRS2	3230 aa		19.05	■□□□□ 0.64
SHMT2-223	ENST00000556689	ATRN	O75882	1429 aa		19.04	■□□□□ 0.64
SHMT2-223	ENST00000556689	XPC	Q01831	940 aa	Predicted RBP	19.03	■□□□□ 0.64
SHMT2-223	ENST00000556689	CCDC125	Q86Z20	511 aa		19.03	■□□□□ 0.64
SHMT2-223	ENST00000556689	STK26	Q9P289	416 aa		19.03	■□□□□ 0.64
SHMT2-223	ENST00000556689	ZRANB1	Q9UGI0	708 aa		19.03	■□□□□ 0.64
SHMT2-223	ENST00000556689	LRPPRC	P42704	1394 aa	Known RBP	19.03	■□□□□ 0.64
SHMT2-223	ENST00000556689	WAPL	Q7Z5K2	1190 aa		19.02	■□□□□ 0.64
SHMT2-223	ENST00000556689	NUTM2F	A1L443	756 aa		19.01	■□□□□ 0.63
SHMT2-223	ENST00000556689	RGL3	Q3MIN7	710 aa		19.01	■□□□□ 0.63
SHMT2-223	ENST00000556689	GJD4	Q96KN9	370 aa	Predicted RBP	19.01	■□□□□ 0.63
SHMT2-223	ENST00000556689	ADGRF5	Q8IZF2	1346 aa		19	■□□□□ 0.63
SHMT2-223	ENST00000556689	BCL9L	Q86UU0	1499 aa		19	■□□□□ 0.63
SHMT2-223	ENST00000556689	MYOM2	P54296	1465 aa		18.99	■□□□□ 0.63
SHMT2-223	ENST00000556689	COL22A1	Q8NFW1	1626 aa	Predicted RBP	18.97	■□□□□ 0.63
SHMT2-223	ENST00000556689	TMEM132E	Q6IEE7	984 aa		18.97	■□□□□ 0.63
SHMT2-223	ENST00000556689	PXDN	Q92626	1479 aa		18.97	■□□□□ 0.63
SHMT2-223	ENST00000556689	UNC5CL	Q8IV45	518 aa		18.96	■□□□□ 0.63
SHMT2-223	ENST00000556689	ABCC11	Q96J66	1382 aa		18.95	■□□□□ 0.62
SHMT2-223	ENST00000556689	ANKRD30B	Q9BXX2	1392 aa		18.94	■□□□□ 0.62
SHMT2-223	ENST00000556689	CDC42BPG	Q6DT37	1551 aa		18.94	■□□□□ 0.62
SHMT2-223	ENST00000556689	KRT28	Q7Z3Y7	464 aa		18.94	■□□□□ 0.62
SHMT2-223	ENST00000556689	SPATA31A3	Q5VYP0	1347 aa		18.94	■□□□□ 0.62
SHMT2-223	ENST00000556689	CCDC144A	A2RUR9	1427 aa		18.93	■□□□□ 0.62
SHMT2-223	ENST00000556689	EP400	Q96L91	3159 aa		18.93	■□□□□ 0.62
SHMT2-223	ENST00000556689	PPL	O60437	1756 aa		18.93	■□□□□ 0.62
SHMT2-223	ENST00000556689	TECPR2	O15040	1411 aa		18.92	■□□□□ 0.62
SHMT2-223	ENST00000556689	MPHOSPH9	Q99550	1183 aa		18.92	■□□□□ 0.62
SHMT2-223	ENST00000556689	PLEKHH1	Q9ULM0	1364 aa		18.92	■□□□□ 0.62
SHMT2-223	ENST00000556689	SIRT1	Q96EB6	747 aa		18.91	■□□□□ 0.62
SHMT2-223	ENST00000556689	PSME1	Q06323	249 aa		18.9	■□□□□ 0.62
SHMT2-223	ENST00000556689	HAP1	P54257	671 aa	Predicted RBP	18.89	■□□□□ 0.61
SHMT2-223	ENST00000556689	SPATA31E1	Q6ZUB1	1445 aa		18.89	■□□□□ 0.61
SHMT2-223	ENST00000556689	PHF8	Q9UPP1	1060 aa		18.88	■□□□□ 0.61
SHMT2-223	ENST00000556689	SLIT2	O94813	1529 aa		18.87	■□□□□ 0.61
SHMT2-223	ENST00000556689	RALGAPB	Q86X10	1494 aa		18.87	■□□□□ 0.61
SHMT2-223	ENST00000556689	C14orf93	Q9H972	538 aa	Known RBP	18.87	■□□□□ 0.61
SHMT2-223	ENST00000556689	YTHDC2	Q9H6S0	1430 aa	Known RBP	18.86	■□□□□ 0.61
SHMT2-223	ENST00000556689	SF3B2	Q13435	895 aa	Known RBP	18.86	■□□□□ 0.61
SHMT2-223	ENST00000556689	SEPT12	Q8IYM1	358 aa		18.86	■□□□□ 0.61
SHMT2-223	ENST00000556689	BLM	P54132	1417 aa	Predicted RBP	18.85	■□□□□ 0.61
SHMT2-223	ENST00000556689	VPS72	Q15906	364 aa		18.85	■□□□□ 0.61
SHMT2-223	ENST00000556689	CABLES1	Q8TDN4	633 aa		18.85	■□□□□ 0.61
SHMT2-223	ENST00000556689	PIK3C2G	O75747	1445 aa		18.84	■□□□□ 0.61
SHMT2-223	ENST00000556689	PLEKHG5	O94827	1062 aa		18.84	■□□□□ 0.61
SHMT2-223	ENST00000556689	LMOD2	Q6P5Q4	547 aa		18.84	■□□□□ 0.61
SHMT2-223	ENST00000556689	CCDC9	Q9Y3X0	531 aa	Known RBP	18.84	■□□□□ 0.61
SHMT2-223	ENST00000556689	MARF1	Q9Y4F3	1742 aa	Known RBP	18.83	■□□□□ 0.61
SHMT2-223	ENST00000556689	DHX57	Q6P158	1386 aa	Known RBP	18.83	■□□□□ 0.61
SHMT2-223	ENST00000556689	ONECUT3	O60422	494 aa	Predicted RBP	18.83	■□□□□ 0.6
SHMT2-223	ENST00000556689	DEFB132	Q7Z7B7	95 aa		18.83	■□□□□ 0.6
SHMT2-223	ENST00000556689	CFAP70	Q5T0N1	1121 aa		18.82	■□□□□ 0.6
SHMT2-223	ENST00000556689	TNS3	Q68CZ2	1445 aa		18.81	■□□□□ 0.6
SHMT2-223	ENST00000556689	GLI3	P10071	1580 aa		18.81	■□□□□ 0.6
SHMT2-223	ENST00000556689	SBNO1	A3KN83	1393 aa		18.81	■□□□□ 0.6
SHMT2-223	ENST00000556689	FAM83G	A6ND36	823 aa		18.8	■□□□□ 0.6
SHMT2-223	ENST00000556689	SAFB2	Q14151	953 aa	Known RBP eCLIP	18.8	■□□□□ 0.6
SHMT2-223	ENST00000556689	KRT27	Q7Z3Y8	459 aa		18.8	■□□□□ 0.6
SHMT2-223	ENST00000556689	PRAM1	Q96QH2	718 aa		18.8	■□□□□ 0.6
SHMT2-223	ENST00000556689	POGK	Q9P215	609 aa		18.79	■□□□□ 0.6
SHMT2-223	ENST00000556689	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	18.79	■□□□□ 0.6
SHMT2-223	ENST00000556689	KIF1A	Q12756	1690 aa		18.79	■□□□□ 0.6
SHMT2-223	ENST00000556689	ACIN1	Q9UKV3	1341 aa	Known RBP	18.78	■□□□□ 0.6
SHMT2-223	ENST00000556689	FMN2	Q9NZ56	1722 aa		18.78	■□□□□ 0.6
SHMT2-223	ENST00000556689	PMFBP1	Q8TBY8	1022 aa		18.78	■□□□□ 0.6
SHMT2-223	ENST00000556689	ARHGEF10	O15013	1369 aa		18.78	■□□□□ 0.6
SHMT2-223	ENST00000556689	KNDC1	Q76NI1	1749 aa		18.77	■□□□□ 0.6
SHMT2-223	ENST00000556689	USP32	Q8NFA0	1604 aa		18.77	■□□□□ 0.6
SHMT2-223	ENST00000556689		A0A0G2JS52	829 aa		18.75	■□□□□ 0.59
SHMT2-223	ENST00000556689	MYT1	Q01538	1121 aa		18.75	■□□□□ 0.59
SHMT2-223	ENST00000556689	NRXN1	Q9ULB1	1477 aa		18.75	■□□□□ 0.59
SHMT2-223	ENST00000556689	IFT172	Q9UG01	1749 aa		18.74	■□□□□ 0.59
SHMT2-223	ENST00000556689	BTG4	Q9NY30	223 aa		18.73	■□□□□ 0.59
SHMT2-223	ENST00000556689	BAG6	P46379	1132 aa		18.72	■□□□□ 0.59
SHMT2-223	ENST00000556689	FAM98C	Q17RN3	349 aa	Known RBP	18.72	■□□□□ 0.59
SHMT2-223	ENST00000556689	TRAK1	Q9UPV9	953 aa		18.71	■□□□□ 0.59
SHMT2-223	ENST00000556689	ANKAR	Q7Z5J8	1434 aa		18.71	■□□□□ 0.59
SHMT2-223	ENST00000556689	GPRASP1	Q5JY77	1395 aa		18.7	■□□□□ 0.58
SHMT2-223	ENST00000556689	HIRIP3	Q9BW71	556 aa	Predicted RBP	18.7	■□□□□ 0.58
SHMT2-223	ENST00000556689	BRWD3	Q6RI45	1802 aa		18.7	■□□□□ 0.58
SHMT2-223	ENST00000556689	RGPD8	O14715	1765 aa	Predicted RBP	18.69	■□□□□ 0.58
SHMT2-223	ENST00000556689	NWD2	Q9ULI1	1742 aa		18.67	■□□□□ 0.58
SHMT2-223	ENST00000556689	PSD	A5PKW4	1024 aa	Predicted RBP	18.67	■□□□□ 0.58
SHMT2-223	ENST00000556689	MINK1	Q8N4C8	1332 aa	Predicted RBP	18.67	■□□□□ 0.58
SHMT2-223	ENST00000556689	DLC1	Q96QB1	1528 aa		18.66	■□□□□ 0.58
SHMT2-223	ENST00000556689	WASL	O00401	505 aa	Predicted RBP	18.66	■□□□□ 0.58
SHMT2-223	ENST00000556689	NGDN	Q8NEJ9	315 aa	Known RBP	18.66	■□□□□ 0.58
SHMT2-223	ENST00000556689	PAK3	O75914	559 aa	Predicted RBP	18.65	■□□□□ 0.58
SHMT2-223	ENST00000556689	HRC	P23327	699 aa		18.65	■□□□□ 0.58
SHMT2-223	ENST00000556689	EN1	Q05925	392 aa	Predicted RBP	18.65	■□□□□ 0.58
SHMT2-223	ENST00000556689	KDM2A	Q9Y2K7	1162 aa		18.65	■□□□□ 0.58
SHMT2-223	ENST00000556689	SPATA31A5	Q5VU36	1347 aa		18.65	■□□□□ 0.58
SHMT2-223	ENST00000556689	SPATA31A7	Q8IWB4	1347 aa		18.65	■□□□□ 0.58
SHMT2-223	ENST00000556689	EIF3A	Q14152	1382 aa	Known RBP	18.65	■□□□□ 0.58
SHMT2-223	ENST00000556689	PLCH1	Q4KWH8	1693 aa		18.64	■□□□□ 0.57
SHMT2-223	ENST00000556689	FAM182B	Q5T319	152 aa		18.64	■□□□□ 0.57

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