RNA–Protein interactions for RNA: ENST00000556648.1

TMEM260-211, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 2,013 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-211ENST00000556648 EVC2Q86UK5 1308 aa13.48□□□□□ -0.25
TMEM260-211ENST00000556648 RRP1P56182 461 aaKnown RBP13.48□□□□□ -0.25
TMEM260-211ENST00000556648 RCAN3Q9UKA8 241 aa13.48□□□□□ -0.25
TMEM260-211ENST00000556648 YTHDC2Q9H6S0 1430 aaKnown RBP13.48□□□□□ -0.25
TMEM260-211ENST00000556648 SHPRHQ149N8 1683 aa13.47□□□□□ -0.25
TMEM260-211ENST00000556648 SETD1AO15047 1707 aaKnown RBP13.46□□□□□ -0.25
TMEM260-211ENST00000556648 TNNT2P45379 298 aaPredicted RBP13.46□□□□□ -0.25
TMEM260-211ENST00000556648 STAG3Q9UJ98 1225 aa13.46□□□□□ -0.25
TMEM260-211ENST00000556648 MINK1Q8N4C8 1332 aaPredicted RBP13.46□□□□□ -0.26
TMEM260-211ENST00000556648 RIMS2Q9UQ26 1411 aa13.45□□□□□ -0.26
TMEM260-211ENST00000556648 PRAM1Q96QH2 718 aa13.45□□□□□ -0.26
TMEM260-211ENST00000556648 PPP6R1Q9UPN7 881 aa13.45□□□□□ -0.26
TMEM260-211ENST00000556648 ANKRD36BQ8N2N9 1353 aa13.45□□□□□ -0.26
TMEM260-211ENST00000556648 MORC1Q86VD1 984 aa13.44□□□□□ -0.26
TMEM260-211ENST00000556648 ZNF521Q96K83 1311 aa13.44□□□□□ -0.26
TMEM260-211ENST00000556648 RBM19Q9Y4C8 960 aaKnown RBP13.44□□□□□ -0.26
TMEM260-211ENST00000556648 NRXN3Q9Y4C0 1643 aa13.43□□□□□ -0.26
TMEM260-211ENST00000556648 A0A1W2PP64 1363 aa13.42□□□□□ -0.26
TMEM260-211ENST00000556648 SRPK2P78362 688 aaKnown RBP13.42□□□□□ -0.26
TMEM260-211ENST00000556648 EXOC6Q8TAG9 804 aa13.42□□□□□ -0.26
TMEM260-211ENST00000556648 PUS7Q96PZ0 661 aaKnown RBP13.42□□□□□ -0.26
TMEM260-211ENST00000556648 POLR3AO14802 1390 aaPredicted RBP13.42□□□□□ -0.26
TMEM260-211ENST00000556648 ZMYM3Q14202 1370 aa13.42□□□□□ -0.26
TMEM260-211ENST00000556648 PLIN1O60240 522 aa13.41□□□□□ -0.26
TMEM260-211ENST00000556648 POGKQ9P215 609 aa13.41□□□□□ -0.26
TMEM260-211ENST00000556648 CGNL1Q0VF96 1302 aa13.41□□□□□ -0.26
TMEM260-211ENST00000556648 CD163L1Q9NR16 1453 aa13.41□□□□□ -0.26
TMEM260-211ENST00000556648 APAF1O14727 1248 aa13.4□□□□□ -0.26
TMEM260-211ENST00000556648 DUSP27Q5VZP5 1158 aa13.4□□□□□ -0.26
TMEM260-211ENST00000556648 CCDC136Q96JN2 1154 aa13.4□□□□□ -0.26
TMEM260-211ENST00000556648 SPINK5Q9NQ38 1064 aaPredicted RBP13.39□□□□□ -0.27
TMEM260-211ENST00000556648 DMRT2Q9Y5R5 561 aa13.39□□□□□ -0.27
TMEM260-211ENST00000556648 WAPLQ7Z5K2 1190 aa13.38□□□□□ -0.27
TMEM260-211ENST00000556648 DLC1Q96QB1 1528 aa13.38□□□□□ -0.27
TMEM260-211ENST00000556648 MTHFSP49914 203 aa13.37□□□□□ -0.27
TMEM260-211ENST00000556648 ABCC11Q96J66 1382 aa13.37□□□□□ -0.27
TMEM260-211ENST00000556648 GOLGA2Q08379 1002 aa13.37□□□□□ -0.27
TMEM260-211ENST00000556648 CDK19Q9BWU1 502 aa13.37□□□□□ -0.27
TMEM260-211ENST00000556648 ESF1Q9H501 851 aaKnown RBP13.37□□□□□ -0.27
TMEM260-211ENST00000556648 METP08581 1390 aa13.36□□□□□ -0.27
TMEM260-211ENST00000556648 ATAD2Q6PL18 1390 aa13.36□□□□□ -0.27
TMEM260-211ENST00000556648 TNRQ92752 1358 aa13.36□□□□□ -0.27
TMEM260-211ENST00000556648 IQSEC2Q5JU85 1478 aa13.36□□□□□ -0.27
TMEM260-211ENST00000556648 ANKRD26Q9UPS8 1709 aa13.36□□□□□ -0.27
TMEM260-211ENST00000556648 SLFN5Q08AF3 891 aa13.36□□□□□ -0.27
TMEM260-211ENST00000556648 NSD2O96028 1365 aa13.36□□□□□ -0.27
TMEM260-211ENST00000556648 NINLQ9Y2I6 1382 aa13.36□□□□□ -0.27
TMEM260-211ENST00000556648 UBR1Q8IWV7 1749 aa13.36□□□□□ -0.27
TMEM260-211ENST00000556648 NLRP1Q9C000 1473 aa13.36□□□□□ -0.27
TMEM260-211ENST00000556648 C20orf194Q5TEA3 1177 aa13.35□□□□□ -0.27
TMEM260-211ENST00000556648 GGNBP2Q9H3C7 697 aa13.35□□□□□ -0.27
TMEM260-211ENST00000556648 CRBNQ96SW2 442 aa13.34□□□□□ -0.27
TMEM260-211ENST00000556648 KIF20BQ96Q89 1820 aa13.34□□□□□ -0.27
TMEM260-211ENST00000556648 TRMT2AQ8IZ69 625 aaKnown RBP13.34□□□□□ -0.27
TMEM260-211ENST00000556648 RRP7AQ9Y3A4 280 aaKnown RBP13.34□□□□□ -0.27
TMEM260-211ENST00000556648 CABP1Q9NZU7 370 aa13.32□□□□□ -0.28
TMEM260-211ENST00000556648 KNDC1Q76NI1 1749 aa13.32□□□□□ -0.28
TMEM260-211ENST00000556648 COL3A1P02461 1466 aaPredicted RBP13.32□□□□□ -0.28
TMEM260-211ENST00000556648 FYB1O15117 783 aa13.31□□□□□ -0.28
TMEM260-211ENST00000556648 TERF2IPQ9NYB0 399 aa13.31□□□□□ -0.28
TMEM260-211ENST00000556648 CEBPAP49715 358 aaPredicted RBP13.3□□□□□ -0.28
TMEM260-211ENST00000556648 TXNDC2Q86VQ3 553 aa13.3□□□□□ -0.28
TMEM260-211ENST00000556648 RUNDC1Q96C34 613 aa13.3□□□□□ -0.28
TMEM260-211ENST00000556648 CFAP53Q96M91 514 aa13.3□□□□□ -0.28
TMEM260-211ENST00000556648 NKTRP30414 1462 aaKnown RBP13.3□□□□□ -0.28
TMEM260-211ENST00000556648 NEUROD2Q15784 382 aa13.3□□□□□ -0.28
TMEM260-211ENST00000556648 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.3□□□□□ -0.28
TMEM260-211ENST00000556648 TMEM2Q9UHN6 1383 aa13.29□□□□□ -0.28
TMEM260-211ENST00000556648 WWC1Q8IX03 1113 aa13.29□□□□□ -0.28
TMEM260-211ENST00000556648 MED14O60244 1454 aa13.29□□□□□ -0.28
TMEM260-211ENST00000556648 CPS1P31327 1500 aa13.29□□□□□ -0.28
TMEM260-211ENST00000556648 HDGFL2Q7Z4V5 671 aaPredicted RBP13.29□□□□□ -0.28
TMEM260-211ENST00000556648 TCP11L2Q8N4U5 519 aa13.29□□□□□ -0.28
TMEM260-211ENST00000556648 C3P01024 1663 aa13.28□□□□□ -0.28
TMEM260-211ENST00000556648 E9PSI1 815 aa13.28□□□□□ -0.28
TMEM260-211ENST00000556648 ADGRB2O60241 1585 aa13.28□□□□□ -0.28
TMEM260-211ENST00000556648 NCKAP5LQ9HCH0 1330 aa13.27□□□□□ -0.28
TMEM260-211ENST00000556648 ATP7BP35670 1465 aa13.27□□□□□ -0.28
TMEM260-211ENST00000556648 ADAMTS13Q76LX8 1427 aa13.27□□□□□ -0.28
TMEM260-211ENST00000556648 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.27□□□□□ -0.28
TMEM260-211ENST00000556648 TECPR2O15040 1411 aa13.27□□□□□ -0.29
TMEM260-211ENST00000556648 U2AF1L5P0DN76 240 aaPredicted RBP13.27□□□□□ -0.29
TMEM260-211ENST00000556648 U2AF1Q01081 240 aaKnown RBP eCLIP13.27□□□□□ -0.29
TMEM260-211ENST00000556648 BCAR3O75815 825 aa13.26□□□□□ -0.29
TMEM260-211ENST00000556648 FBLN1P23142 703 aa13.26□□□□□ -0.29
TMEM260-211ENST00000556648 PPIP5K1Q6PFW1 1433 aa13.26□□□□□ -0.29
TMEM260-211ENST00000556648 WASLO00401 505 aaPredicted RBP13.25□□□□□ -0.29
TMEM260-211ENST00000556648 LTKP29376 864 aa13.25□□□□□ -0.29
TMEM260-211ENST00000556648 ROBO2Q9HCK4 1378 aa13.25□□□□□ -0.29
TMEM260-211ENST00000556648 FER1L4A9Z1Z3 1794 aa13.25□□□□□ -0.29
TMEM260-211ENST00000556648 MSH5O43196 834 aa13.25□□□□□ -0.29
TMEM260-211ENST00000556648 SKAP1Q86WV1 359 aa13.25□□□□□ -0.29
TMEM260-211ENST00000556648 FAM135BQ49AJ0 1406 aa13.24□□□□□ -0.29
TMEM260-211ENST00000556648 U2SURPO15042 1029 aaKnown RBP13.24□□□□□ -0.29
TMEM260-211ENST00000556648 NGEFQ8N5V2 710 aa13.24□□□□□ -0.29
TMEM260-211ENST00000556648 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.24□□□□□ -0.29
TMEM260-211ENST00000556648 CDC42BPGQ6DT37 1551 aa13.24□□□□□ -0.29
TMEM260-211ENST00000556648 ZRANB1Q9UGI0 708 aa13.23□□□□□ -0.29
TMEM260-211ENST00000556648 CPSF1Q10570 1443 aaKnown RBP13.23□□□□□ -0.29
TMEM260-211ENST00000556648 MON2Q7Z3U7 1717 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms