RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 CDK12Q9NYV4 1490 aaPredicted RBP15.52■□□□□ 0.07
SCFD1-220ENST00000556486 AMOTL2Q9Y2J4 779 aa15.51■□□□□ 0.07
SCFD1-220ENST00000556486 RPRD2Q5VT52 1461 aaKnown RBP15.51■□□□□ 0.07
SCFD1-220ENST00000556486 NCOA3Q9Y6Q9 1424 aa15.51■□□□□ 0.07
SCFD1-220ENST00000556486 E9PCH4 1651 aa15.51■□□□□ 0.07
SCFD1-220ENST00000556486 NHSL1Q5SYE7 1610 aa15.5■□□□□ 0.07
SCFD1-220ENST00000556486 HDGFP51858 240 aaKnown RBP15.5■□□□□ 0.07
SCFD1-220ENST00000556486 FAM50AQ14320 339 aaKnown RBP15.5■□□□□ 0.07
SCFD1-220ENST00000556486 QTRT2Q9H974 415 aaKnown RBP15.5■□□□□ 0.07
SCFD1-220ENST00000556486 TRPM2O94759 1503 aa15.49■□□□□ 0.07
SCFD1-220ENST00000556486 CHRDL2Q6WN34 429 aa15.49■□□□□ 0.07
SCFD1-220ENST00000556486 ANKRD50Q9ULJ7 1429 aa15.49■□□□□ 0.07
SCFD1-220ENST00000556486 UNC13BO14795 1591 aa15.49■□□□□ 0.07
SCFD1-220ENST00000556486 ADAMTS2O95450 1211 aa15.48■□□□□ 0.07
SCFD1-220ENST00000556486 PRKCSHP14314 528 aaPredicted RBP15.47■□□□□ 0.07
SCFD1-220ENST00000556486 MST1RQ04912 1400 aa15.47■□□□□ 0.07
SCFD1-220ENST00000556486 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.47■□□□□ 0.07
SCFD1-220ENST00000556486 NRXN3Q9Y4C0 1643 aa15.46■□□□□ 0.06
SCFD1-220ENST00000556486 XRN1Q8IZH2 1706 aaKnown RBP15.46■□□□□ 0.06
SCFD1-220ENST00000556486 SETD5Q9C0A6 1442 aa15.45■□□□□ 0.06
SCFD1-220ENST00000556486 RBM6P78332 1123 aaKnown RBP15.45■□□□□ 0.06
SCFD1-220ENST00000556486 PNPLA6Q8IY17 1366 aa15.45■□□□□ 0.06
SCFD1-220ENST00000556486 NALCNQ8IZF0 1738 aa15.44■□□□□ 0.06
SCFD1-220ENST00000556486 NGLY1Q96IV0 654 aa15.43■□□□□ 0.06
SCFD1-220ENST00000556486 TAOK2Q9UL54 1235 aa15.43■□□□□ 0.06
SCFD1-220ENST00000556486 PIK3R4Q99570 1358 aa15.43■□□□□ 0.06
SCFD1-220ENST00000556486 SETBP1Q9Y6X0 1596 aa15.42■□□□□ 0.06
SCFD1-220ENST00000556486 ROCK1Q13464 1354 aa15.42■□□□□ 0.06
SCFD1-220ENST00000556486 EP400Q96L91 3159 aa15.42■□□□□ 0.06
SCFD1-220ENST00000556486 PITPNM1O00562 1244 aa15.42■□□□□ 0.06
SCFD1-220ENST00000556486 POTEHQ6S545 545 aa15.42■□□□□ 0.06
SCFD1-220ENST00000556486 LRRC59Q96AG4 307 aaKnown RBP15.42■□□□□ 0.06
SCFD1-220ENST00000556486 DCCP43146 1447 aa15.41■□□□□ 0.06
SCFD1-220ENST00000556486 METP08581 1390 aa15.4■□□□□ 0.06
SCFD1-220ENST00000556486 ATAD2Q6PL18 1390 aa15.39■□□□□ 0.05
SCFD1-220ENST00000556486 IQGAP3Q86VI3 1631 aa15.39■□□□□ 0.05
SCFD1-220ENST00000556486 ZNF326Q5BKZ1 582 aaKnown RBP15.38■□□□□ 0.05
SCFD1-220ENST00000556486 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.38■□□□□ 0.05
SCFD1-220ENST00000556486 ADGRL3Q9HAR2 1447 aa15.37■□□□□ 0.05
SCFD1-220ENST00000556486 BBXQ8WY36 941 aaPredicted RBP15.37■□□□□ 0.05
SCFD1-220ENST00000556486 USP21Q9UK80 565 aa15.37■□□□□ 0.05
SCFD1-220ENST00000556486 ZRANB1Q9UGI0 708 aa15.36■□□□□ 0.05
SCFD1-220ENST00000556486 C1orf167Q5SNV9 1468 aa15.34■□□□□ 0.05
SCFD1-220ENST00000556486 SPOCK2Q92563 424 aa15.34■□□□□ 0.05
SCFD1-220ENST00000556486 ORAI2Q96SN7 254 aa15.34■□□□□ 0.05
SCFD1-220ENST00000556486 NUP155O75694 1391 aa15.34■□□□□ 0.05
SCFD1-220ENST00000556486 SPHKAPQ2M3C7 1700 aa15.34■□□□□ 0.05
SCFD1-220ENST00000556486 ITGAEP38570 1179 aa15.33■□□□□ 0.04
SCFD1-220ENST00000556486 ECM2O94769 699 aaPredicted RBP15.32■□□□□ 0.04
SCFD1-220ENST00000556486 KLHL34Q8N239 644 aa15.32■□□□□ 0.04
SCFD1-220ENST00000556486 SPDYE1Q8NFV5 336 aaPredicted RBP15.32■□□□□ 0.04
SCFD1-220ENST00000556486 TRPC5Q9UL62 973 aaPredicted RBP15.32■□□□□ 0.04
SCFD1-220ENST00000556486 ATRNO75882 1429 aa15.3■□□□□ 0.04
SCFD1-220ENST00000556486 KDM2AQ9Y2K7 1162 aa15.3■□□□□ 0.04
SCFD1-220ENST00000556486 LAMC1P11047 1609 aa15.29■□□□□ 0.04
SCFD1-220ENST00000556486 CLTCL1P53675 1640 aa15.29■□□□□ 0.04
SCFD1-220ENST00000556486 NEXMIFQ5QGS0 1516 aa15.29■□□□□ 0.04
SCFD1-220ENST00000556486 XPCQ01831 940 aaPredicted RBP15.29■□□□□ 0.04
SCFD1-220ENST00000556486 PAXIP1Q6ZW49 1069 aaPredicted RBP15.28■□□□□ 0.04
SCFD1-220ENST00000556486 ROBO2Q9HCK4 1378 aa15.27■□□□□ 0.04
SCFD1-220ENST00000556486 SOS2Q07890 1332 aaPredicted RBP15.27■□□□□ 0.04
SCFD1-220ENST00000556486 MARF1Q9Y4F3 1742 aaKnown RBP15.27■□□□□ 0.04
SCFD1-220ENST00000556486 FNBP4Q8N3X1 1017 aaPredicted RBP15.27■□□□□ 0.04
SCFD1-220ENST00000556486 COL22A1Q8NFW1 1626 aaPredicted RBP15.27■□□□□ 0.03
SCFD1-220ENST00000556486 BCL9LQ86UU0 1499 aa15.26■□□□□ 0.03
SCFD1-220ENST00000556486 PTCH1Q13635 1447 aa15.26■□□□□ 0.03
SCFD1-220ENST00000556486 CLEC11AQ9Y240 323 aa15.25■□□□□ 0.03
SCFD1-220ENST00000556486 BRWD3Q6RI45 1802 aa15.24■□□□□ 0.03
SCFD1-220ENST00000556486 FXR2P51116 673 aaKnown RBP eCLIP15.24■□□□□ 0.03
SCFD1-220ENST00000556486 DEFB132Q7Z7B7 95 aa15.24■□□□□ 0.03
SCFD1-220ENST00000556486 CFAP44Q96MT7 982 aa15.24■□□□□ 0.03
SCFD1-220ENST00000556486 KIF1BO60333 1816 aa15.24■□□□□ 0.03
SCFD1-220ENST00000556486 MYOM2P54296 1465 aa15.23■□□□□ 0.03
SCFD1-220ENST00000556486 PLEKHG5O94827 1062 aa15.23■□□□□ 0.03
SCFD1-220ENST00000556486 PIP4P2Q8N4L2 257 aa15.23■□□□□ 0.03
SCFD1-220ENST00000556486 NUTM2FA1L443 756 aa15.22■□□□□ 0.03
SCFD1-220ENST00000556486 ESCO1Q5FWF5 840 aa15.22■□□□□ 0.03
SCFD1-220ENST00000556486 GLI3P10071 1580 aa15.21■□□□□ 0.03
SCFD1-220ENST00000556486 RRBP1Q9P2E9 1410 aaKnown RBP15.21■□□□□ 0.03
SCFD1-220ENST00000556486 GJD4Q96KN9 370 aaPredicted RBP15.21■□□□□ 0.03
SCFD1-220ENST00000556486 PXDNQ92626 1479 aa15.2■□□□□ 0.02
SCFD1-220ENST00000556486 TPRNQ4KMQ1 711 aa15.2■□□□□ 0.02
SCFD1-220ENST00000556486 PPARGC1BQ86YN6 1023 aaKnown RBP15.2■□□□□ 0.02
SCFD1-220ENST00000556486 FOXO3O43524 673 aa15.19■□□□□ 0.02
SCFD1-220ENST00000556486 CCDC125Q86Z20 511 aa15.19■□□□□ 0.02
SCFD1-220ENST00000556486 RALGAPBQ86X10 1494 aa15.19■□□□□ 0.02
SCFD1-220ENST00000556486 BLMP54132 1417 aaPredicted RBP15.17■□□□□ 0.02
SCFD1-220ENST00000556486 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.17■□□□□ 0.02
SCFD1-220ENST00000556486 PSDA5PKW4 1024 aaPredicted RBP15.17■□□□□ 0.02
SCFD1-220ENST00000556486 NPHP3Q7Z494 1330 aa15.17■□□□□ 0.02
SCFD1-220ENST00000556486 NAIPQ13075 1403 aa15.16■□□□□ 0.02
SCFD1-220ENST00000556486 CDC42BPGQ6DT37 1551 aa15.15■□□□□ 0.02
SCFD1-220ENST00000556486 LRP5O75197 1615 aa15.14■□□□□ 0.01
SCFD1-220ENST00000556486 UNC5CLQ8IV45 518 aa15.14■□□□□ 0.01
SCFD1-220ENST00000556486 PPLO60437 1756 aa15.13■□□□□ 0.01
SCFD1-220ENST00000556486 HFM1A2PYH4 1435 aa15.13■□□□□ 0.01
SCFD1-220ENST00000556486 RGL2O15211 777 aa15.13■□□□□ 0.01
SCFD1-220ENST00000556486 SF3B2Q13435 895 aaKnown RBP15.13■□□□□ 0.01
SCFD1-220ENST00000556486 SEPT12Q8IYM1 358 aa15.13■□□□□ 0.01
SCFD1-220ENST00000556486 STK26Q9P289 416 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms