RNA–Protein interactions for RNA: ENST00000555837.5

CDKN3-208, Transcript of cyclin dependent kinase inhibitor 3, human

TSL 2

Gene CDKN3, Length 689 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDKN3-208	ENST00000555837	CDC42BPG	Q6DT37	1551 aa		32.79	■■■□□ 2.84
CDKN3-208	ENST00000555837	PRAM1	Q96QH2	718 aa		32.78	■■■□□ 2.84
CDKN3-208	ENST00000555837	TRAK1	Q9UPV9	953 aa		32.78	■■■□□ 2.84
CDKN3-208	ENST00000555837	BRINP3	Q76B58	766 aa		32.74	■■■□□ 2.83
CDKN3-208	ENST00000555837	C1orf167	Q5SNV9	1468 aa		32.72	■■■□□ 2.83
CDKN3-208	ENST00000555837	EIF3A	Q14152	1382 aa	Known RBP	32.7	■■■□□ 2.83
CDKN3-208	ENST00000555837	PLEKHH1	Q9ULM0	1364 aa		32.7	■■■□□ 2.82
CDKN3-208	ENST00000555837	PHLPP1	O60346	1717 aa		32.68	■■■□□ 2.82
CDKN3-208	ENST00000555837	AHDC1	Q5TGY3	1603 aa	Predicted RBP	32.68	■■■□□ 2.82
CDKN3-208	ENST00000555837	TIMELESS	Q9UNS1	1208 aa		32.66	■■■□□ 2.82
CDKN3-208	ENST00000555837	SAFB2	Q14151	953 aa	Known RBP eCLIP	32.65	■■■□□ 2.82
CDKN3-208	ENST00000555837	JCAD	Q9P266	1359 aa		32.63	■■■□□ 2.81
CDKN3-208	ENST00000555837	ESCO1	Q5FWF5	840 aa		32.63	■■■□□ 2.81
CDKN3-208	ENST00000555837	ROCK2	O75116	1388 aa	Known RBP	32.62	■■■□□ 2.81
CDKN3-208	ENST00000555837	NBPF1	Q3BBV0	1214 aa		32.62	■■■□□ 2.81
CDKN3-208	ENST00000555837	LRRC59	Q96AG4	307 aa	Known RBP	32.61	■■■□□ 2.81
CDKN3-208	ENST00000555837	ADGRB2	O60241	1585 aa		32.6	■■■□□ 2.81
CDKN3-208	ENST00000555837	NPHP3	Q7Z494	1330 aa		32.59	■■■□□ 2.81
CDKN3-208	ENST00000555837	FMN2	Q9NZ56	1722 aa		32.58	■■■□□ 2.81
CDKN3-208	ENST00000555837	ARHGEF28	Q8N1W1	1705 aa	Known RBP	32.57	■■■□□ 2.81
CDKN3-208	ENST00000555837	CCER1	Q8TC90	406 aa	Predicted RBP	32.57	■■■□□ 2.8
CDKN3-208	ENST00000555837	ORAI2	Q96SN7	254 aa		32.57	■■■□□ 2.8
CDKN3-208	ENST00000555837	TRPM1	Q7Z4N2	1603 aa		32.57	■■■□□ 2.8
CDKN3-208	ENST00000555837	ANKAR	Q7Z5J8	1434 aa		32.57	■■■□□ 2.8
CDKN3-208	ENST00000555837	MINK1	Q8N4C8	1332 aa	Predicted RBP	32.56	■■■□□ 2.8
CDKN3-208	ENST00000555837	NHSL1	Q5SYE7	1610 aa		32.56	■■■□□ 2.8
CDKN3-208	ENST00000555837	COL16A1	Q07092	1604 aa	Predicted RBP	32.55	■■■□□ 2.8
CDKN3-208	ENST00000555837	CENPJ	Q9HC77	1338 aa	Predicted RBP	32.54	■■■□□ 2.8
CDKN3-208	ENST00000555837	WASL	O00401	505 aa	Predicted RBP	32.54	■■■□□ 2.8
CDKN3-208	ENST00000555837	DISP3	Q9P2K9	1392 aa		32.54	■■■□□ 2.8
CDKN3-208	ENST00000555837	SPATA31A6	Q5VVP1	1343 aa		32.53	■■■□□ 2.8
CDKN3-208	ENST00000555837	NUTM2F	A1L443	756 aa		32.53	■■■□□ 2.8
CDKN3-208	ENST00000555837	KIF1A	Q12756	1690 aa		32.51	■■■□□ 2.79
CDKN3-208	ENST00000555837	HIRIP3	Q9BW71	556 aa	Predicted RBP	32.51	■■■□□ 2.79
CDKN3-208	ENST00000555837	GPRASP1	Q5JY77	1395 aa		32.49	■■■□□ 2.79
CDKN3-208	ENST00000555837	PHF23	Q9BUL5	403 aa	Predicted RBP	32.49	■■■□□ 2.79
CDKN3-208	ENST00000555837	SOS2	Q07890	1332 aa	Predicted RBP	32.49	■■■□□ 2.79
CDKN3-208	ENST00000555837	PHF8	Q9UPP1	1060 aa		32.48	■■■□□ 2.79
CDKN3-208	ENST00000555837	PSME1	Q06323	249 aa		32.47	■■■□□ 2.79
CDKN3-208	ENST00000555837	MED1	Q15648	1581 aa	Predicted RBP	32.47	■■■□□ 2.79
CDKN3-208	ENST00000555837	NBPF8	Q3BBV2	869 aa		32.47	■■■□□ 2.79
CDKN3-208	ENST00000555837	CARD11	Q9BXL7	1154 aa		32.47	■■■□□ 2.79
CDKN3-208	ENST00000555837	TULP4	Q9NRJ4	1543 aa		32.46	■■■□□ 2.79
CDKN3-208	ENST00000555837	FOXO3	O43524	673 aa		32.45	■■■□□ 2.79
CDKN3-208	ENST00000555837	RALGAPB	Q86X10	1494 aa		32.45	■■■□□ 2.79
CDKN3-208	ENST00000555837	SHPRH	Q149N8	1683 aa		32.44	■■■□□ 2.78
CDKN3-208	ENST00000555837	SLC24A1	O60721	1099 aa		32.43	■■■□□ 2.78
CDKN3-208	ENST00000555837	CDK19	Q9BWU1	502 aa		32.41	■■■□□ 2.78
CDKN3-208	ENST00000555837	DDX17	Q92841	729 aa	Known RBP	32.39	■■■□□ 2.78
CDKN3-208	ENST00000555837	EVC2	Q86UK5	1308 aa		32.39	■■■□□ 2.78
CDKN3-208	ENST00000555837	SRPK2	P78362	688 aa	Known RBP	32.37	■■■□□ 2.77
CDKN3-208	ENST00000555837	NUDT16	Q96DE0	195 aa	Known RBP	32.37	■■■□□ 2.77
CDKN3-208	ENST00000555837	CCDC61	Q9Y6R9	512 aa		32.37	■■■□□ 2.77
CDKN3-208	ENST00000555837	MEX3C	Q5U5Q3	659 aa	Known RBP	32.36	■■■□□ 2.77
CDKN3-208	ENST00000555837	KRT28	Q7Z3Y7	464 aa		32.36	■■■□□ 2.77
CDKN3-208	ENST00000555837	ITSN1	Q15811	1721 aa		32.35	■■■□□ 2.77
CDKN3-208	ENST00000555837	QRICH2	Q9H0J4	1663 aa		32.35	■■■□□ 2.77
CDKN3-208	ENST00000555837	NGDN	Q8NEJ9	315 aa	Known RBP	32.34	■■■□□ 2.77
CDKN3-208	ENST00000555837	PXDN	Q92626	1479 aa		32.34	■■■□□ 2.77
CDKN3-208	ENST00000555837	PNPLA6	Q8IY17	1366 aa		32.33	■■■□□ 2.77
CDKN3-208	ENST00000555837	RGPD8	O14715	1765 aa	Predicted RBP	32.33	■■■□□ 2.77
CDKN3-208	ENST00000555837	PMFBP1	Q8TBY8	1022 aa		32.32	■■■□□ 2.76
CDKN3-208	ENST00000555837	SBNO2	Q9Y2G9	1366 aa		32.32	■■■□□ 2.76
CDKN3-208	ENST00000555837	USP32	Q8NFA0	1604 aa		32.31	■■■□□ 2.76
CDKN3-208	ENST00000555837	SBNO1	A3KN83	1393 aa		32.3	■■■□□ 2.76
CDKN3-208	ENST00000555837	ATP7B	P35670	1465 aa		32.29	■■■□□ 2.76
CDKN3-208	ENST00000555837	PRR36	Q9H6K5	1346 aa		32.29	■■■□□ 2.76
CDKN3-208	ENST00000555837	SPATA31A3	Q5VYP0	1347 aa		32.27	■■■□□ 2.76
CDKN3-208	ENST00000555837	NUTM2B	A6NNL0	878 aa	Predicted RBP	32.27	■■■□□ 2.76
CDKN3-208	ENST00000555837	NUTM2E	B1AL46	878 aa	Predicted RBP	32.27	■■■□□ 2.76
CDKN3-208	ENST00000555837	XPC	Q01831	940 aa	Predicted RBP	32.27	■■■□□ 2.76
CDKN3-208	ENST00000555837	NUTM2A	Q8IVF1	878 aa	Predicted RBP	32.27	■■■□□ 2.76
CDKN3-208	ENST00000555837	ARHGEF10	O15013	1369 aa		32.27	■■■□□ 2.76
CDKN3-208	ENST00000555837	PLEKHG3	A1L390	1219 aa		32.25	■■■□□ 2.75
CDKN3-208	ENST00000555837	TNS3	Q68CZ2	1445 aa		32.23	■■■□□ 2.75
CDKN3-208	ENST00000555837	COL22A1	Q8NFW1	1626 aa	Predicted RBP	32.22	■■■□□ 2.75
CDKN3-208	ENST00000555837	ATAD2	Q6PL18	1390 aa		32.21	■■■□□ 2.75
CDKN3-208	ENST00000555837	ZNF772	Q68DY9	489 aa	Predicted RBP	32.21	■■■□□ 2.75
CDKN3-208	ENST00000555837	CABP2	Q9NPB3	220 aa		32.21	■■■□□ 2.75
CDKN3-208	ENST00000555837	LMOD2	Q6P5Q4	547 aa		32.19	■■■□□ 2.74
CDKN3-208	ENST00000555837	POLR3A	O14802	1390 aa	Predicted RBP	32.19	■■■□□ 2.74
CDKN3-208	ENST00000555837	BRD4	O60885	1362 aa	Predicted RBP	32.19	■■■□□ 2.74
CDKN3-208	ENST00000555837	PPIP5K1	Q6PFW1	1433 aa		32.18	■■■□□ 2.74
CDKN3-208	ENST00000555837	HAP1	P54257	671 aa	Predicted RBP	32.18	■■■□□ 2.74
CDKN3-208	ENST00000555837	PUS7	Q96PZ0	661 aa	Known RBP	32.18	■■■□□ 2.74
CDKN3-208	ENST00000555837	ACE	P12821	1306 aa		32.17	■■■□□ 2.74
CDKN3-208	ENST00000555837	LRP6	O75581	1613 aa		32.16	■■■□□ 2.74
CDKN3-208	ENST00000555837	TOPAZ1	Q8N9V7	1692 aa		32.16	■■■□□ 2.74
CDKN3-208	ENST00000555837	PAK3	O75914	559 aa	Predicted RBP	32.15	■■■□□ 2.74
CDKN3-208	ENST00000555837	ZNF692	Q9BU19	519 aa	Predicted RBP	32.13	■■■□□ 2.73
CDKN3-208	ENST00000555837	USP47	Q96K76	1375 aa		32.12	■■■□□ 2.73
CDKN3-208	ENST00000555837	ST20-MTHFS	A0A0A6YYL1	179 aa		32.12	■■■□□ 2.73
CDKN3-208	ENST00000555837	ADAMTS2	O95450	1211 aa		32.11	■■■□□ 2.73
CDKN3-208	ENST00000555837	NGLY1	Q96IV0	654 aa		32.11	■■■□□ 2.73
CDKN3-208	ENST00000555837	CABP1	Q9NZU7	370 aa		32.11	■■■□□ 2.73
CDKN3-208	ENST00000555837	CDCA8	Q53HL2	280 aa		32.1	■■■□□ 2.73
CDKN3-208	ENST00000555837	C8orf37	Q96NL8	207 aa		32.1	■■■□□ 2.73
CDKN3-208	ENST00000555837	TMF1	P82094	1093 aa		32.07	■■■□□ 2.72
CDKN3-208	ENST00000555837	TRPM3	Q9HCF6	1732 aa	Predicted RBP	32.06	■■■□□ 2.72
CDKN3-208	ENST00000555837	AFF2	P51816	1311 aa		32.04	■■■□□ 2.72

Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms