RNA–Protein interactions for RNA: ENST00000555497.5

TMEM260-207, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 2,218 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-207ENST00000555497 STAG3Q9UJ98 1225 aa32.22■■■□□ 2.75
TMEM260-207ENST00000555497 ALKQ9UM73 1620 aa32.2■■■□□ 2.75
TMEM260-207ENST00000555497 CCDC146Q8IYE0 955 aa32.2■■■□□ 2.75
TMEM260-207ENST00000555497 ZNF521Q96K83 1311 aa32.2■■■□□ 2.74
TMEM260-207ENST00000555497 YTHDC2Q9H6S0 1430 aaKnown RBP32.19■■■□□ 2.74
TMEM260-207ENST00000555497 USP32Q8NFA0 1604 aa32.19■■■□□ 2.74
TMEM260-207ENST00000555497 MORC1Q86VD1 984 aa32.19■■■□□ 2.74
TMEM260-207ENST00000555497 A2ML1A8K2U0 1454 aa32.18■■■□□ 2.74
TMEM260-207ENST00000555497 POLR3AO14802 1390 aaPredicted RBP32.15■■■□□ 2.74
TMEM260-207ENST00000555497 ANKRD36BQ8N2N9 1353 aa32.15■■■□□ 2.74
TMEM260-207ENST00000555497 TNNT2P45379 298 aaPredicted RBP32.15■■■□□ 2.74
TMEM260-207ENST00000555497 PRAM1Q96QH2 718 aa32.15■■■□□ 2.74
TMEM260-207ENST00000555497 CCDC136Q96JN2 1154 aa32.14■■■□□ 2.73
TMEM260-207ENST00000555497 CGNL1Q0VF96 1302 aa32.12■■■□□ 2.73
TMEM260-207ENST00000555497 MINK1Q8N4C8 1332 aaPredicted RBP32.12■■■□□ 2.73
TMEM260-207ENST00000555497 EXOC6Q8TAG9 804 aa32.11■■■□□ 2.73
TMEM260-207ENST00000555497 APAF1O14727 1248 aa32.11■■■□□ 2.73
TMEM260-207ENST00000555497 DUSP27Q5VZP5 1158 aa32.1■■■□□ 2.73
TMEM260-207ENST00000555497 RIMS2Q9UQ26 1411 aa32.09■■■□□ 2.73
TMEM260-207ENST00000555497 SRPK2P78362 688 aaKnown RBP32.09■■■□□ 2.73
TMEM260-207ENST00000555497 SHPRHQ149N8 1683 aa32.09■■■□□ 2.73
TMEM260-207ENST00000555497 POGKQ9P215 609 aa32.08■■■□□ 2.73
TMEM260-207ENST00000555497 GOLGA2Q08379 1002 aa32.07■■■□□ 2.72
TMEM260-207ENST00000555497 ZMYM3Q14202 1370 aa32.07■■■□□ 2.72
TMEM260-207ENST00000555497 PLIN1O60240 522 aa32.06■■■□□ 2.72
TMEM260-207ENST00000555497 A0A1W2PP64 1363 aa32.05■■■□□ 2.72
TMEM260-207ENST00000555497 SETD1AO15047 1707 aaKnown RBP32.04■■■□□ 2.72
TMEM260-207ENST00000555497 SLFN5Q08AF3 891 aa32.03■■■□□ 2.72
TMEM260-207ENST00000555497 MTHFSP49914 203 aa32.02■■■□□ 2.72
TMEM260-207ENST00000555497 SPINK5Q9NQ38 1064 aaPredicted RBP32.02■■■□□ 2.72
TMEM260-207ENST00000555497 NINLQ9Y2I6 1382 aa32.01■■■□□ 2.72
TMEM260-207ENST00000555497 NSD2O96028 1365 aa32■■■□□ 2.71
TMEM260-207ENST00000555497 TRMT2AQ8IZ69 625 aaKnown RBP32■■■□□ 2.71
TMEM260-207ENST00000555497 ATAD2Q6PL18 1390 aa31.99■■■□□ 2.71
TMEM260-207ENST00000555497 ESF1Q9H501 851 aaKnown RBP31.99■■■□□ 2.71
TMEM260-207ENST00000555497 CD163L1Q9NR16 1453 aa31.99■■■□□ 2.71
TMEM260-207ENST00000555497 ABCC11Q96J66 1382 aa31.98■■■□□ 2.71
TMEM260-207ENST00000555497 CDK19Q9BWU1 502 aa31.98■■■□□ 2.71
TMEM260-207ENST00000555497 NRXN3Q9Y4C0 1643 aa31.97■■■□□ 2.71
TMEM260-207ENST00000555497 WAPLQ7Z5K2 1190 aa31.96■■■□□ 2.71
TMEM260-207ENST00000555497 DMRT2Q9Y5R5 561 aa31.96■■■□□ 2.71
TMEM260-207ENST00000555497 DLC1Q96QB1 1528 aa31.95■■■□□ 2.7
TMEM260-207ENST00000555497 GGNBP2Q9H3C7 697 aa31.92■■■□□ 2.7
TMEM260-207ENST00000555497 C20orf194Q5TEA3 1177 aa31.91■■■□□ 2.7
TMEM260-207ENST00000555497 CRBNQ96SW2 442 aa31.91■■■□□ 2.7
TMEM260-207ENST00000555497 TERF2IPQ9NYB0 399 aa31.91■■■□□ 2.7
TMEM260-207ENST00000555497 NGEFQ8N5V2 710 aa31.9■■■□□ 2.7
TMEM260-207ENST00000555497 METP08581 1390 aa31.89■■■□□ 2.7
TMEM260-207ENST00000555497 TNRQ92752 1358 aa31.89■■■□□ 2.7
TMEM260-207ENST00000555497 FYB1O15117 783 aa31.88■■■□□ 2.69
TMEM260-207ENST00000555497 CFAP53Q96M91 514 aa31.88■■■□□ 2.69
TMEM260-207ENST00000555497 CABP1Q9NZU7 370 aa31.88■■■□□ 2.69
TMEM260-207ENST00000555497 ABCF1Q8NE71 845 aaKnown RBP eCLIP31.88■■■□□ 2.69
TMEM260-207ENST00000555497 RUNDC1Q96C34 613 aa31.88■■■□□ 2.69
TMEM260-207ENST00000555497 NLRP1Q9C000 1473 aa31.87■■■□□ 2.69
TMEM260-207ENST00000555497 WWC1Q8IX03 1113 aa31.87■■■□□ 2.69
TMEM260-207ENST00000555497 IQSEC2Q5JU85 1478 aa31.86■■■□□ 2.69
TMEM260-207ENST00000555497 E9PSI1 815 aa31.85■■■□□ 2.69
TMEM260-207ENST00000555497 NKTRP30414 1462 aaKnown RBP31.85■■■□□ 2.69
TMEM260-207ENST00000555497 ANKRD26Q9UPS8 1709 aa31.84■■■□□ 2.69
TMEM260-207ENST00000555497 RRP7AQ9Y3A4 280 aaKnown RBP31.84■■■□□ 2.69
TMEM260-207ENST00000555497 TCP11L2Q8N4U5 519 aa31.83■■■□□ 2.69
TMEM260-207ENST00000555497 HDGFL2Q7Z4V5 671 aaPredicted RBP31.82■■■□□ 2.68
TMEM260-207ENST00000555497 UBR1Q8IWV7 1749 aa31.81■■■□□ 2.68
TMEM260-207ENST00000555497 MED14O60244 1454 aa31.81■■■□□ 2.68
TMEM260-207ENST00000555497 NEUROD2Q15784 382 aa31.81■■■□□ 2.68
TMEM260-207ENST00000555497 TXNDC2Q86VQ3 553 aa31.79■■■□□ 2.68
TMEM260-207ENST00000555497 ANP32EQ9BTT0 268 aa31.78■■■□□ 2.68
TMEM260-207ENST00000555497 PHF23Q9BUL5 403 aaPredicted RBP31.78■■■□□ 2.68
TMEM260-207ENST00000555497 TMEM2Q9UHN6 1383 aa31.77■■■□□ 2.68
TMEM260-207ENST00000555497 U2AF1L5P0DN76 240 aaPredicted RBP31.77■■■□□ 2.68
TMEM260-207ENST00000555497 U2AF1Q01081 240 aaKnown RBP eCLIP31.77■■■□□ 2.68
TMEM260-207ENST00000555497 FANCIQ9NVI1 1328 aa31.77■■■□□ 2.68
TMEM260-207ENST00000555497 COL3A1P02461 1466 aaPredicted RBP31.76■■■□□ 2.67
TMEM260-207ENST00000555497 KIF20BQ96Q89 1820 aa31.75■■■□□ 2.67
TMEM260-207ENST00000555497 HDGFP51858 240 aaKnown RBP31.74■■■□□ 2.67
TMEM260-207ENST00000555497 BCAR3O75815 825 aa31.73■■■□□ 2.67
TMEM260-207ENST00000555497 WASLO00401 505 aaPredicted RBP31.73■■■□□ 2.67
TMEM260-207ENST00000555497 CEBPAP49715 358 aaPredicted RBP31.73■■■□□ 2.67
TMEM260-207ENST00000555497 KNDC1Q76NI1 1749 aa31.72■■■□□ 2.67
TMEM260-207ENST00000555497 ATP7BP35670 1465 aa31.72■■■□□ 2.67
TMEM260-207ENST00000555497 TECPR2O15040 1411 aa31.71■■■□□ 2.67
TMEM260-207ENST00000555497 SUGP2Q8IX01 1082 aaKnown RBP eCLIP31.7■■■□□ 2.67
TMEM260-207ENST00000555497 GOLGA6L2Q8N9W4 650 aaPredicted RBP31.7■■■□□ 2.67
TMEM260-207ENST00000555497 MSH5O43196 834 aa31.69■■■□□ 2.66
TMEM260-207ENST00000555497 FAM135BQ49AJ0 1406 aa31.69■■■□□ 2.66
TMEM260-207ENST00000555497 ADGRB2O60241 1585 aa31.68■■■□□ 2.66
TMEM260-207ENST00000555497 CCDC27Q2M243 656 aa31.68■■■□□ 2.66
TMEM260-207ENST00000555497 SIRT1Q96EB6 747 aa31.68■■■□□ 2.66
TMEM260-207ENST00000555497 LTKP29376 864 aa31.67■■■□□ 2.66
TMEM260-207ENST00000555497 ADAMTS13Q76LX8 1427 aa31.67■■■□□ 2.66
TMEM260-207ENST00000555497 CPS1P31327 1500 aa31.67■■■□□ 2.66
TMEM260-207ENST00000555497 U2SURPO15042 1029 aaKnown RBP31.67■■■□□ 2.66
TMEM260-207ENST00000555497 WDR63Q8IWG1 891 aa31.67■■■□□ 2.66
TMEM260-207ENST00000555497 PLEKHF1Q96S99 279 aa31.66■■■□□ 2.66
TMEM260-207ENST00000555497 NCKAP5LQ9HCH0 1330 aa31.66■■■□□ 2.66
TMEM260-207ENST00000555497 CPSF1Q10570 1443 aaKnown RBP31.66■■■□□ 2.66
TMEM260-207ENST00000555497 PPIP5K1Q6PFW1 1433 aa31.66■■■□□ 2.66
TMEM260-207ENST00000555497 FBLN1P23142 703 aa31.65■■■□□ 2.66
TMEM260-207ENST00000555497 PNPLA6Q8IY17 1366 aa31.64■■■□□ 2.66
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms