RNA–Protein interactions for RNA: ENST00000553989.1

TDP1-208, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 728 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-208ENST00000553989 CDK12Q9NYV4 1490 aaPredicted RBP13.22□□□□□ -0.29
TDP1-208ENST00000553989 NGLY1Q96IV0 654 aa13.21□□□□□ -0.29
TDP1-208ENST00000553989 ORAI2Q96SN7 254 aa13.21□□□□□ -0.29
TDP1-208ENST00000553989 QTRT2Q9H974 415 aaKnown RBP13.21□□□□□ -0.29
TDP1-208ENST00000553989 RBM6P78332 1123 aaKnown RBP13.19□□□□□ -0.3
TDP1-208ENST00000553989 CCDC144AA2RUR9 1427 aa13.19□□□□□ -0.3
TDP1-208ENST00000553989 PPLO60437 1756 aa13.19□□□□□ -0.3
TDP1-208ENST00000553989 RGL3Q3MIN7 710 aa13.18□□□□□ -0.3
TDP1-208ENST00000553989 RGS12O14924 1447 aa13.18□□□□□ -0.3
TDP1-208ENST00000553989 SOS2Q07890 1332 aaPredicted RBP13.17□□□□□ -0.3
TDP1-208ENST00000553989 ESCO1Q5FWF5 840 aa13.17□□□□□ -0.3
TDP1-208ENST00000553989 STK26Q9P289 416 aa13.17□□□□□ -0.3
TDP1-208ENST00000553989 PRAG1Q86YV5 1406 aa13.16□□□□□ -0.3
TDP1-208ENST00000553989 USP21Q9UK80 565 aa13.16□□□□□ -0.3
TDP1-208ENST00000553989 NPHP3Q7Z494 1330 aa13.15□□□□□ -0.3
TDP1-208ENST00000553989 LAMC1P11047 1609 aa13.15□□□□□ -0.3
TDP1-208ENST00000553989 NUTM2FA1L443 756 aa13.15□□□□□ -0.3
TDP1-208ENST00000553989 CDC42BPGQ6DT37 1551 aa13.15□□□□□ -0.3
TDP1-208ENST00000553989 ADGRF5Q8IZF2 1346 aa13.14□□□□□ -0.31
TDP1-208ENST00000553989 HOXD11P31277 338 aaPredicted RBP13.14□□□□□ -0.31
TDP1-208ENST00000553989 XPCQ01831 940 aaPredicted RBP13.14□□□□□ -0.31
TDP1-208ENST00000553989 TRPC5Q9UL62 973 aaPredicted RBP13.14□□□□□ -0.31
TDP1-208ENST00000553989 ANKRD30BQ9BXX2 1392 aa13.13□□□□□ -0.31
TDP1-208ENST00000553989 LRPPRCP42704 1394 aaKnown RBP13.12□□□□□ -0.31
TDP1-208ENST00000553989 FOXO3O43524 673 aa13.12□□□□□ -0.31
TDP1-208ENST00000553989 WAPLQ7Z5K2 1190 aa13.12□□□□□ -0.31
TDP1-208ENST00000553989 MPHOSPH9Q99550 1183 aa13.12□□□□□ -0.31
TDP1-208ENST00000553989 ATAD2Q6PL18 1390 aa13.11□□□□□ -0.31
TDP1-208ENST00000553989 TMEM132EQ6IEE7 984 aa13.11□□□□□ -0.31
TDP1-208ENST00000553989 COL22A1Q8NFW1 1626 aaPredicted RBP13.1□□□□□ -0.31
TDP1-208ENST00000553989 SPATA31E1Q6ZUB1 1445 aa13.1□□□□□ -0.31
TDP1-208ENST00000553989 PXDNQ92626 1479 aa13.1□□□□□ -0.31
TDP1-208ENST00000553989 TECPR2O15040 1411 aa13.09□□□□□ -0.31
TDP1-208ENST00000553989 FNBP4Q8N3X1 1017 aaPredicted RBP13.09□□□□□ -0.31
TDP1-208ENST00000553989 MYOM2P54296 1465 aa13.09□□□□□ -0.31
TDP1-208ENST00000553989 PLEKHH1Q9ULM0 1364 aa13.08□□□□□ -0.31
TDP1-208ENST00000553989 PIK3C2GO75747 1445 aa13.08□□□□□ -0.32
TDP1-208ENST00000553989 ATRNO75882 1429 aa13.08□□□□□ -0.32
TDP1-208ENST00000553989 HAP1P54257 671 aaPredicted RBP13.08□□□□□ -0.32
TDP1-208ENST00000553989 KNDC1Q76NI1 1749 aa13.08□□□□□ -0.32
TDP1-208ENST00000553989 IFT172Q9UG01 1749 aa13.08□□□□□ -0.32
TDP1-208ENST00000553989 ABCC11Q96J66 1382 aa13.07□□□□□ -0.32
TDP1-208ENST00000553989 YTHDC2Q9H6S0 1430 aaKnown RBP13.07□□□□□ -0.32
TDP1-208ENST00000553989 PLEKHG5O94827 1062 aa13.06□□□□□ -0.32
TDP1-208ENST00000553989 KIF1AQ12756 1690 aa13.05□□□□□ -0.32
TDP1-208ENST00000553989 FMN2Q9NZ56 1722 aa13.05□□□□□ -0.32
TDP1-208ENST00000553989 SAFB2Q14151 953 aaKnown RBP eCLIP13.04□□□□□ -0.32
TDP1-208ENST00000553989 MARF1Q9Y4F3 1742 aaKnown RBP13.04□□□□□ -0.32
TDP1-208ENST00000553989 DHX57Q6P158 1386 aaKnown RBP13.04□□□□□ -0.32
TDP1-208ENST00000553989 BCL9LQ86UU0 1499 aa13.04□□□□□ -0.32
TDP1-208ENST00000553989 LMOD2Q6P5Q4 547 aa13.03□□□□□ -0.32
TDP1-208ENST00000553989 KRT28Q7Z3Y7 464 aa13.03□□□□□ -0.32
TDP1-208ENST00000553989 GJD4Q96KN9 370 aaPredicted RBP13.03□□□□□ -0.32
TDP1-208ENST00000553989 SPATA31A3Q5VYP0 1347 aa13.03□□□□□ -0.32
TDP1-208ENST00000553989 ACIN1Q9UKV3 1341 aaKnown RBP13.03□□□□□ -0.32
TDP1-208ENST00000553989 PSME1Q06323 249 aa13.02□□□□□ -0.33
TDP1-208ENST00000553989 CFAP70Q5T0N1 1121 aa13.02□□□□□ -0.33
TDP1-208ENST00000553989 UNC5CLQ8IV45 518 aa13.02□□□□□ -0.33
TDP1-208ENST00000553989 POGKQ9P215 609 aa13.02□□□□□ -0.33
TDP1-208ENST00000553989 PHF8Q9UPP1 1060 aa13.02□□□□□ -0.33
TDP1-208ENST00000553989 PRAM1Q96QH2 718 aa13.01□□□□□ -0.33
TDP1-208ENST00000553989 C14orf93Q9H972 538 aaKnown RBP13.01□□□□□ -0.33
TDP1-208ENST00000553989 TNS3Q68CZ2 1445 aa13.01□□□□□ -0.33
TDP1-208ENST00000553989 USP32Q8NFA0 1604 aa13□□□□□ -0.33
TDP1-208ENST00000553989 SIRT1Q96EB6 747 aa13□□□□□ -0.33
TDP1-208ENST00000553989 ZRANB1Q9UGI0 708 aa13□□□□□ -0.33
TDP1-208ENST00000553989 CCDC9Q9Y3X0 531 aaKnown RBP13□□□□□ -0.33
TDP1-208ENST00000553989 RALGAPBQ86X10 1494 aa12.99□□□□□ -0.33
TDP1-208ENST00000553989 CCDC125Q86Z20 511 aa12.99□□□□□ -0.33
TDP1-208ENST00000553989 CABLES1Q8TDN4 633 aa12.99□□□□□ -0.33
TDP1-208ENST00000553989 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.99□□□□□ -0.33
TDP1-208ENST00000553989 SLIT2O94813 1529 aa12.98□□□□□ -0.33
TDP1-208ENST00000553989 NRXN1Q9ULB1 1477 aa12.98□□□□□ -0.33
TDP1-208ENST00000553989 PMFBP1Q8TBY8 1022 aa12.98□□□□□ -0.33
TDP1-208ENST00000553989 RGPD8O14715 1765 aaPredicted RBP12.97□□□□□ -0.33
TDP1-208ENST00000553989 ARHGEF10O15013 1369 aa12.97□□□□□ -0.33
TDP1-208ENST00000553989 RAB3GAP2Q9H2M9 1393 aa12.97□□□□□ -0.33
TDP1-208ENST00000553989 A0A0G2JS52 829 aa12.97□□□□□ -0.33
TDP1-208ENST00000553989 MYT1Q01538 1121 aa12.97□□□□□ -0.33
TDP1-208ENST00000553989 SBNO1A3KN83 1393 aa12.96□□□□□ -0.33
TDP1-208ENST00000553989 GLI3P10071 1580 aa12.96□□□□□ -0.33
TDP1-208ENST00000553989 SLC4A2P04920 1241 aa12.96□□□□□ -0.33
TDP1-208ENST00000553989 SF3B2Q13435 895 aaKnown RBP12.96□□□□□ -0.33
TDP1-208ENST00000553989 HIRIP3Q9BW71 556 aaPredicted RBP12.96□□□□□ -0.33
TDP1-208ENST00000553989 TRAK1Q9UPV9 953 aa12.96□□□□□ -0.33
TDP1-208ENST00000553989 KDM2AQ9Y2K7 1162 aa12.96□□□□□ -0.33
TDP1-208ENST00000553989 DLC1Q96QB1 1528 aa12.95□□□□□ -0.34
TDP1-208ENST00000553989 ANKARQ7Z5J8 1434 aa12.95□□□□□ -0.34
TDP1-208ENST00000553989 MINK1Q8N4C8 1332 aaPredicted RBP12.94□□□□□ -0.34
TDP1-208ENST00000553989 PLCH1Q4KWH8 1693 aa12.94□□□□□ -0.34
TDP1-208ENST00000553989 VPS72Q15906 364 aa12.94□□□□□ -0.34
TDP1-208ENST00000553989 SEPT12Q8IYM1 358 aa12.94□□□□□ -0.34
TDP1-208ENST00000553989 BLMP54132 1417 aaPredicted RBP12.94□□□□□ -0.34
TDP1-208ENST00000553989 EIF3AQ14152 1382 aaKnown RBP12.94□□□□□ -0.34
TDP1-208ENST00000553989 GPRASP1Q5JY77 1395 aa12.94□□□□□ -0.34
TDP1-208ENST00000553989 HRCP23327 699 aa12.93□□□□□ -0.34
TDP1-208ENST00000553989 DCAF11Q8TEB1 546 aa12.93□□□□□ -0.34
TDP1-208ENST00000553989 ADGRB2O60241 1585 aa12.92□□□□□ -0.34
TDP1-208ENST00000553989 ABCA3Q99758 1704 aa12.92□□□□□ -0.34
TDP1-208ENST00000553989 NWD2Q9ULI1 1742 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms