RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 C1orf167Q5SNV9 1468 aa21.2■□□□□ 0.98
SHMT2-208ENST00000553868 NRXN3Q9Y4C0 1643 aa21.2■□□□□ 0.98
SHMT2-208ENST00000553868 ZEB1P37275 1124 aaPredicted RBP21.2■□□□□ 0.98
SHMT2-208ENST00000553868 BRWD3Q6RI45 1802 aa21.2■□□□□ 0.98
SHMT2-208ENST00000553868 ANKRD50Q9ULJ7 1429 aa21.2■□□□□ 0.98
SHMT2-208ENST00000553868 LAMC1P11047 1609 aa21.19■□□□□ 0.98
SHMT2-208ENST00000553868 CLSPNQ9HAW4 1339 aa21.18■□□□□ 0.98
SHMT2-208ENST00000553868 METP08581 1390 aa21.18■□□□□ 0.98
SHMT2-208ENST00000553868 DHX57Q6P158 1386 aaKnown RBP21.18■□□□□ 0.98
SHMT2-208ENST00000553868 SF3B2Q13435 895 aaKnown RBP21.17■□□□□ 0.98
SHMT2-208ENST00000553868 GLI3P10071 1580 aa21.17■□□□□ 0.98
SHMT2-208ENST00000553868 COL22A1Q8NFW1 1626 aaPredicted RBP21.17■□□□□ 0.98
SHMT2-208ENST00000553868 MYOM2P54296 1465 aa21.16■□□□□ 0.98
SHMT2-208ENST00000553868 RALGAPBQ86X10 1494 aa21.14■□□□□ 0.98
SHMT2-208ENST00000553868 YY1P25490 414 aa21.14■□□□□ 0.97
SHMT2-208ENST00000553868 MARF1Q9Y4F3 1742 aaKnown RBP21.14■□□□□ 0.97
SHMT2-208ENST00000553868 E9PCH4 1651 aa21.1■□□□□ 0.97
SHMT2-208ENST00000553868 SEPT12Q8IYM1 358 aa21.09■□□□□ 0.97
SHMT2-208ENST00000553868 XPCQ01831 940 aaPredicted RBP21.08■□□□□ 0.97
SHMT2-208ENST00000553868 UNC5CLQ8IV45 518 aa21.08■□□□□ 0.97
SHMT2-208ENST00000553868 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.08■□□□□ 0.97
SHMT2-208ENST00000553868 R3HDM1Q15032 1099 aaKnown RBP21.06■□□□□ 0.96
SHMT2-208ENST00000553868 SPHKAPQ2M3C7 1700 aa21.06■□□□□ 0.96
SHMT2-208ENST00000553868 SLIT2O94813 1529 aa21.04■□□□□ 0.96
SHMT2-208ENST00000553868 BAG6P46379 1132 aa21.02■□□□□ 0.96
SHMT2-208ENST00000553868 PXDNQ92626 1479 aa21.01■□□□□ 0.95
SHMT2-208ENST00000553868 EN1Q05925 392 aaPredicted RBP21.01■□□□□ 0.95
SHMT2-208ENST00000553868 KRT27Q7Z3Y8 459 aa21.01■□□□□ 0.95
SHMT2-208ENST00000553868 MPHOSPH9Q99550 1183 aa21.01■□□□□ 0.95
SHMT2-208ENST00000553868 NUP155O75694 1391 aa21■□□□□ 0.95
SHMT2-208ENST00000553868 ROBO2Q9HCK4 1378 aa20.99■□□□□ 0.95
SHMT2-208ENST00000553868 ZNF326Q5BKZ1 582 aaKnown RBP20.99■□□□□ 0.95
SHMT2-208ENST00000553868 SLC4A1APQ9BWU0 796 aaKnown RBP20.99■□□□□ 0.95
SHMT2-208ENST00000553868 FOXO3O43524 673 aa20.98■□□□□ 0.95
SHMT2-208ENST00000553868 ESCO1Q5FWF5 840 aa20.98■□□□□ 0.95
SHMT2-208ENST00000553868 NPHP3Q7Z494 1330 aa20.98■□□□□ 0.95
SHMT2-208ENST00000553868 IQGAP3Q86VI3 1631 aa20.97■□□□□ 0.95
SHMT2-208ENST00000553868 CCDC9Q9Y3X0 531 aaKnown RBP20.95■□□□□ 0.94
SHMT2-208ENST00000553868 ONECUT3O60422 494 aaPredicted RBP20.93■□□□□ 0.94
SHMT2-208ENST00000553868 VPS72Q15906 364 aa20.93■□□□□ 0.94
SHMT2-208ENST00000553868 FAM182BQ5T319 152 aa20.93■□□□□ 0.94
SHMT2-208ENST00000553868 A0A0G2JS52 829 aa20.92■□□□□ 0.94
SHMT2-208ENST00000553868 PLEKHG5O94827 1062 aa20.92■□□□□ 0.94
SHMT2-208ENST00000553868 MYT1Q01538 1121 aa20.92■□□□□ 0.94
SHMT2-208ENST00000553868 USP32Q8NFA0 1604 aa20.91■□□□□ 0.94
SHMT2-208ENST00000553868 NUTM2FA1L443 756 aa20.9■□□□□ 0.94
SHMT2-208ENST00000553868 NEXMIFQ5QGS0 1516 aa20.89■□□□□ 0.94
SHMT2-208ENST00000553868 IFFO2Q5TF58 517 aa20.89■□□□□ 0.93
SHMT2-208ENST00000553868 EZH2Q15910 746 aaKnown RBP20.88■□□□□ 0.93
SHMT2-208ENST00000553868 PLCH1Q4KWH8 1693 aa20.88■□□□□ 0.93
SHMT2-208ENST00000553868 CABLES1Q8TDN4 633 aa20.87■□□□□ 0.93
SHMT2-208ENST00000553868 RGPD1P0DJD0 1748 aa20.87■□□□□ 0.93
SHMT2-208ENST00000553868 FAM98CQ17RN3 349 aaKnown RBP20.86■□□□□ 0.93
SHMT2-208ENST00000553868 TIMELESSQ9UNS1 1208 aa20.86■□□□□ 0.93
SHMT2-208ENST00000553868 SPATA31A3Q5VYP0 1347 aa20.85■□□□□ 0.93
SHMT2-208ENST00000553868 ANKRD30BQ9BXX2 1392 aa20.84■□□□□ 0.93
SHMT2-208ENST00000553868 HAP1P54257 671 aaPredicted RBP20.83■□□□□ 0.93
SHMT2-208ENST00000553868 TNS1Q9HBL0 1735 aaKnown RBP20.83■□□□□ 0.92
SHMT2-208ENST00000553868 CDC42BPGQ6DT37 1551 aa20.82■□□□□ 0.92
SHMT2-208ENST00000553868 NWD2Q9ULI1 1742 aa20.81■□□□□ 0.92
SHMT2-208ENST00000553868 SENP3-EIF4A1A0A087X0R7 540 aa20.81■□□□□ 0.92
SHMT2-208ENST00000553868 NEUROD1Q13562 356 aa20.81■□□□□ 0.92
SHMT2-208ENST00000553868 LRPPRCP42704 1394 aaKnown RBP20.81■□□□□ 0.92
SHMT2-208ENST00000553868 UTRNP46939 3433 aa20.81■□□□□ 0.92
SHMT2-208ENST00000553868 SIN3AQ96ST3 1273 aa20.8■□□□□ 0.92
SHMT2-208ENST00000553868 DISP2A7MBM2 1401 aa20.79■□□□□ 0.92
SHMT2-208ENST00000553868 CAMTA1Q9Y6Y1 1673 aa20.79■□□□□ 0.92
SHMT2-208ENST00000553868 CAMKK2Q96RR4 588 aa20.78■□□□□ 0.92
SHMT2-208ENST00000553868 CLTCL1P53675 1640 aa20.78■□□□□ 0.92
SHMT2-208ENST00000553868 PRAG1Q86YV5 1406 aa20.78■□□□□ 0.92
SHMT2-208ENST00000553868 TONSLQ96HA7 1378 aa20.77■□□□□ 0.92
SHMT2-208ENST00000553868 FAM83GA6ND36 823 aa20.77■□□□□ 0.92
SHMT2-208ENST00000553868 KRT28Q7Z3Y7 464 aa20.77■□□□□ 0.92
SHMT2-208ENST00000553868 ZNF784Q8NCA9 323 aaPredicted RBP20.76■□□□□ 0.91
SHMT2-208ENST00000553868 PPP1R1BQ9UD71 204 aaPredicted RBP20.75■□□□□ 0.91
SHMT2-208ENST00000553868 NRAPQ86VF7 1730 aa20.74■□□□□ 0.91
SHMT2-208ENST00000553868 ABCA3Q99758 1704 aa20.74■□□□□ 0.91
SHMT2-208ENST00000553868 DCAF8L1A6NGE4 600 aa20.73■□□□□ 0.91
SHMT2-208ENST00000553868 TRIM37O94972 964 aa20.73■□□□□ 0.91
SHMT2-208ENST00000553868 WAPLQ7Z5K2 1190 aa20.73■□□□□ 0.91
SHMT2-208ENST00000553868 CCDC144AA2RUR9 1427 aa20.72■□□□□ 0.91
SHMT2-208ENST00000553868 LMOD2Q6P5Q4 547 aa20.72■□□□□ 0.91
SHMT2-208ENST00000553868 TNS3Q68CZ2 1445 aa20.71■□□□□ 0.91
SHMT2-208ENST00000553868 BTG4Q9NY30 223 aa20.7■□□□□ 0.9
SHMT2-208ENST00000553868 APBA3O96018 575 aa20.69■□□□□ 0.9
SHMT2-208ENST00000553868 KIF1BO60333 1816 aa20.69■□□□□ 0.9
SHMT2-208ENST00000553868 KIF1AQ12756 1690 aa20.68■□□□□ 0.9
SHMT2-208ENST00000553868 NUP188Q5SRE5 1749 aa20.68■□□□□ 0.9
SHMT2-208ENST00000553868 VGFO15240 615 aaPredicted RBP20.68■□□□□ 0.9
SHMT2-208ENST00000553868 SPON1Q9HCB6 807 aa20.68■□□□□ 0.9
SHMT2-208ENST00000553868 STK26Q9P289 416 aa20.68■□□□□ 0.9
SHMT2-208ENST00000553868 NINLQ9Y2I6 1382 aa20.68■□□□□ 0.9
SHMT2-208ENST00000553868 ADGRB2O60241 1585 aa20.68■□□□□ 0.9
SHMT2-208ENST00000553868 PLEKHH1Q9ULM0 1364 aa20.67■□□□□ 0.9
SHMT2-208ENST00000553868 RREB1Q92766 1687 aa20.67■□□□□ 0.9
SHMT2-208ENST00000553868 FMN2Q9NZ56 1722 aa20.67■□□□□ 0.9
SHMT2-208ENST00000553868 C1QTNF8P60827 252 aa20.66■□□□□ 0.9
SHMT2-208ENST00000553868 THSD7AQ9UPZ6 1657 aa20.66■□□□□ 0.9
SHMT2-208ENST00000553868 RGPD8O14715 1765 aaPredicted RBP20.66■□□□□ 0.9
SHMT2-208ENST00000553868 KCNQ2O43526 872 aa20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms