RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 RICTORQ6R327 1708 aa16.02■□□□□ 0.15
SHMT2-207ENST00000553837 DDRGK1Q96HY6 314 aa16.02■□□□□ 0.15
SHMT2-207ENST00000553837 YEATS2Q9ULM3 1422 aa16.01■□□□□ 0.15
SHMT2-207ENST00000553837 PIK3C2BO00750 1634 aa16.01■□□□□ 0.15
SHMT2-207ENST00000553837 CCDC146Q8IYE0 955 aa16■□□□□ 0.15
SHMT2-207ENST00000553837 QRICH2Q9H0J4 1663 aa16■□□□□ 0.15
SHMT2-207ENST00000553837 DUSP27Q5VZP5 1158 aa15.99■□□□□ 0.15
SHMT2-207ENST00000553837 RPGRIP1LQ68CZ1 1315 aa15.99■□□□□ 0.15
SHMT2-207ENST00000553837 SLC12A5Q9H2X9 1139 aa15.99■□□□□ 0.15
SHMT2-207ENST00000553837 NEXMIFQ5QGS0 1516 aa15.98■□□□□ 0.15
SHMT2-207ENST00000553837 C20orf194Q5TEA3 1177 aa15.97■□□□□ 0.15
SHMT2-207ENST00000553837 BRPF3Q9ULD4 1205 aa15.97■□□□□ 0.15
SHMT2-207ENST00000553837 RSPH6AQ9H0K4 717 aa15.97■□□□□ 0.15
SHMT2-207ENST00000553837 IDI1Q13907 227 aa15.96■□□□□ 0.15
SHMT2-207ENST00000553837 CRBNQ96SW2 442 aa15.96■□□□□ 0.15
SHMT2-207ENST00000553837 PODXL2Q9NZ53 605 aa15.96■□□□□ 0.15
SHMT2-207ENST00000553837 SPINK5Q9NQ38 1064 aaPredicted RBP15.96■□□□□ 0.14
SHMT2-207ENST00000553837 NSD3Q9BZ95 1437 aa15.96■□□□□ 0.14
SHMT2-207ENST00000553837 GLI2P10070 1586 aa15.95■□□□□ 0.14
SHMT2-207ENST00000553837 APAF1O14727 1248 aa15.94■□□□□ 0.14
SHMT2-207ENST00000553837 ARHGAP31Q2M1Z3 1444 aa15.94■□□□□ 0.14
SHMT2-207ENST00000553837 SENP3Q9H4L4 574 aaPredicted RBP15.94■□□□□ 0.14
SHMT2-207ENST00000553837 GOLGA2Q08379 1002 aa15.94■□□□□ 0.14
SHMT2-207ENST00000553837 SLFN5Q08AF3 891 aa15.93■□□□□ 0.14
SHMT2-207ENST00000553837 ARHGEF28Q8N1W1 1705 aaKnown RBP15.93■□□□□ 0.14
SHMT2-207ENST00000553837 DMRT2Q9Y5R5 561 aa15.93■□□□□ 0.14
SHMT2-207ENST00000553837 TULP4Q9NRJ4 1543 aa15.92■□□□□ 0.14
SHMT2-207ENST00000553837 TRHP20396 242 aaPredicted RBP15.92■□□□□ 0.14
SHMT2-207ENST00000553837 TRMT2AQ8IZ69 625 aaKnown RBP15.92■□□□□ 0.14
SHMT2-207ENST00000553837 MYO5BQ9ULV0 1848 aa15.92■□□□□ 0.14
SHMT2-207ENST00000553837 VGFO15240 615 aaPredicted RBP15.91■□□□□ 0.14
SHMT2-207ENST00000553837 TNNT2P45379 298 aaPredicted RBP15.91■□□□□ 0.14
SHMT2-207ENST00000553837 NFKBIBQ15653 356 aa15.91■□□□□ 0.14
SHMT2-207ENST00000553837 POLR3AO14802 1390 aaPredicted RBP15.9■□□□□ 0.14
SHMT2-207ENST00000553837 SHPRHQ149N8 1683 aa15.9■□□□□ 0.14
SHMT2-207ENST00000553837 SKAP1Q86WV1 359 aa15.9■□□□□ 0.14
SHMT2-207ENST00000553837 MORC1Q86VD1 984 aa15.89■□□□□ 0.13
SHMT2-207ENST00000553837 PREX1Q8TCU6 1659 aa15.89■□□□□ 0.13
SHMT2-207ENST00000553837 SAFB2Q14151 953 aaKnown RBP eCLIP15.88■□□□□ 0.13
SHMT2-207ENST00000553837 FBXO31Q5XUX0 539 aaPredicted RBP15.88■□□□□ 0.13
SHMT2-207ENST00000553837 FRAT1Q92837 279 aaPredicted RBP15.88■□□□□ 0.13
SHMT2-207ENST00000553837 TMEM131LA2VDJ0 1609 aa15.88■□□□□ 0.13
SHMT2-207ENST00000553837 CABP2Q9NPB3 220 aa15.87■□□□□ 0.13
SHMT2-207ENST00000553837 SLC52A1Q9NWF4 448 aa15.86■□□□□ 0.13
SHMT2-207ENST00000553837 STK26Q9P289 416 aa15.86■□□□□ 0.13
SHMT2-207ENST00000553837 ZFYVE9O95405 1425 aa15.86■□□□□ 0.13
SHMT2-207ENST00000553837 USP32Q8NFA0 1604 aa15.86■□□□□ 0.13
SHMT2-207ENST00000553837 FAM69CQ0P6D2 419 aa15.85■□□□□ 0.13
SHMT2-207ENST00000553837 FAM43AQ8N2R8 423 aa15.85■□□□□ 0.13
SHMT2-207ENST00000553837 EVC2Q86UK5 1308 aa15.85■□□□□ 0.13
SHMT2-207ENST00000553837 KIF13AQ9H1H9 1805 aa15.84■□□□□ 0.13
SHMT2-207ENST00000553837 PLEKHG5O94827 1062 aa15.84■□□□□ 0.13
SHMT2-207ENST00000553837 DIP2BQ9P265 1576 aa15.83■□□□□ 0.12
SHMT2-207ENST00000553837 NKTRP30414 1462 aaKnown RBP15.83■□□□□ 0.12
SHMT2-207ENST00000553837 ANKRD36BQ8N2N9 1353 aa15.83■□□□□ 0.12
SHMT2-207ENST00000553837 BCAR3O75815 825 aa15.83■□□□□ 0.12
SHMT2-207ENST00000553837 MTHFSP49914 203 aa15.83■□□□□ 0.12
SHMT2-207ENST00000553837 PUS7Q96PZ0 661 aaKnown RBP15.83■□□□□ 0.12
SHMT2-207ENST00000553837 CGNL1Q0VF96 1302 aa15.82■□□□□ 0.12
SHMT2-207ENST00000553837 WWC1Q8IX03 1113 aa15.82■□□□□ 0.12
SHMT2-207ENST00000553837 PTPRMP28827 1452 aa15.82■□□□□ 0.12
SHMT2-207ENST00000553837 TSPOAP1O95153 1857 aa15.82■□□□□ 0.12
SHMT2-207ENST00000553837 KDM2BQ8NHM5 1336 aa15.82■□□□□ 0.12
SHMT2-207ENST00000553837 E9PSI1 815 aa15.82■□□□□ 0.12
SHMT2-207ENST00000553837 RRP7AQ9Y3A4 280 aaKnown RBP15.81■□□□□ 0.12
SHMT2-207ENST00000553837 IQSEC2Q5JU85 1478 aa15.8■□□□□ 0.12
SHMT2-207ENST00000553837 A0A1W2PP64 1363 aa15.8■□□□□ 0.12
SHMT2-207ENST00000553837 NEUROD2Q15784 382 aa15.79■□□□□ 0.12
SHMT2-207ENST00000553837 PRAM1Q96QH2 718 aa15.79■□□□□ 0.12
SHMT2-207ENST00000553837 MINK1Q8N4C8 1332 aaPredicted RBP15.78■□□□□ 0.12
SHMT2-207ENST00000553837 YTHDC2Q9H6S0 1430 aaKnown RBP15.78■□□□□ 0.12
SHMT2-207ENST00000553837 RUNDC1Q96C34 613 aa15.78■□□□□ 0.12
SHMT2-207ENST00000553837 TCP11L2Q8N4U5 519 aa15.77■□□□□ 0.12
SHMT2-207ENST00000553837 ZMYND15Q9H091 742 aa15.77■□□□□ 0.12
SHMT2-207ENST00000553837 SRPK2P78362 688 aaKnown RBP15.77■□□□□ 0.11
SHMT2-207ENST00000553837 NGEFQ8N5V2 710 aa15.77■□□□□ 0.11
SHMT2-207ENST00000553837 PHF23Q9BUL5 403 aaPredicted RBP15.77■□□□□ 0.11
SHMT2-207ENST00000553837 ALKQ9UM73 1620 aa15.77■□□□□ 0.11
SHMT2-207ENST00000553837 CD163L1Q9NR16 1453 aa15.76■□□□□ 0.11
SHMT2-207ENST00000553837 SLC4A3P48751 1232 aa15.76■□□□□ 0.11
SHMT2-207ENST00000553837 NSD2O96028 1365 aa15.75■□□□□ 0.11
SHMT2-207ENST00000553837 ABCC11Q96J66 1382 aa15.75■□□□□ 0.11
SHMT2-207ENST00000553837 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.75■□□□□ 0.11
SHMT2-207ENST00000553837 CLTCQ00610 1675 aaKnown RBP15.75■□□□□ 0.11
SHMT2-207ENST00000553837 GGNBP2Q9H3C7 697 aa15.75■□□□□ 0.11
SHMT2-207ENST00000553837 REREQ9P2R6 1566 aa15.73■□□□□ 0.11
SHMT2-207ENST00000553837 POGKQ9P215 609 aa15.73■□□□□ 0.11
SHMT2-207ENST00000553837 AGLP35573 1532 aa15.73■□□□□ 0.11
SHMT2-207ENST00000553837 NLRP1Q9C000 1473 aa15.72■□□□□ 0.11
SHMT2-207ENST00000553837 FAM161AQ3B820 660 aa15.72■□□□□ 0.11
SHMT2-207ENST00000553837 CENPQQ7L2Z9 268 aaPredicted RBP15.72■□□□□ 0.11
SHMT2-207ENST00000553837 CFAP53Q96M91 514 aa15.72■□□□□ 0.11
SHMT2-207ENST00000553837 FYB1O15117 783 aa15.72■□□□□ 0.11
SHMT2-207ENST00000553837 FRAT2O75474 233 aaPredicted RBP15.72■□□□□ 0.11
SHMT2-207ENST00000553837 MLECQ14165 292 aa15.72■□□□□ 0.11
SHMT2-207ENST00000553837 A2ML1A8K2U0 1454 aa15.71■□□□□ 0.11
SHMT2-207ENST00000553837 ARHGEF40Q8TER5 1519 aa15.71■□□□□ 0.11
SHMT2-207ENST00000553837 NINLQ9Y2I6 1382 aa15.71■□□□□ 0.11
SHMT2-207ENST00000553837 U2AF1L5P0DN76 240 aaPredicted RBP15.7■□□□□ 0.1
SHMT2-207ENST00000553837 U2AF1Q01081 240 aaKnown RBP eCLIP15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms