RNA–Protein interactions for RNA: ENST00000553691.5

VIPAS39-205, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5

Gene VIPAS39, Length 806 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-205ENST00000553691 ZNF454Q8N9F8 522 aa10.34□□□□□ -0.75
VIPAS39-205ENST00000553691 DIP2CQ9Y2E4 1556 aa10.34□□□□□ -0.75
VIPAS39-205ENST00000553691 MYT1LQ9UL68 1186 aa10.33□□□□□ -0.76
VIPAS39-205ENST00000553691 REREQ9P2R6 1566 aa10.33□□□□□ -0.76
VIPAS39-205ENST00000553691 KIDINS220Q9ULH0 1771 aa10.33□□□□□ -0.76
VIPAS39-205ENST00000553691 VPS8Q8N3P4 1428 aa10.33□□□□□ -0.76
VIPAS39-205ENST00000553691 MLH3Q9UHC1 1453 aa10.32□□□□□ -0.76
VIPAS39-205ENST00000553691 SYCP2Q9BX26 1530 aa10.32□□□□□ -0.76
VIPAS39-205ENST00000553691 C3P01024 1663 aa10.31□□□□□ -0.76
VIPAS39-205ENST00000553691 ATP10AO60312 1499 aa10.31□□□□□ -0.76
VIPAS39-205ENST00000553691 PPP4R3BQ5MIZ7 849 aa10.31□□□□□ -0.76
VIPAS39-205ENST00000553691 AFAP1Q8N556 730 aa10.31□□□□□ -0.76
VIPAS39-205ENST00000553691 C9orf84Q5VXU9 1444 aa10.31□□□□□ -0.76
VIPAS39-205ENST00000553691 HSPA1LP34931 641 aa10.3□□□□□ -0.76
VIPAS39-205ENST00000553691 ANKRD13DQ6ZTN6 518 aa10.3□□□□□ -0.76
VIPAS39-205ENST00000553691 SPNS2Q8IVW8 549 aa10.3□□□□□ -0.76
VIPAS39-205ENST00000553691 ANO8Q9HCE9 1232 aaPredicted RBP10.3□□□□□ -0.76
VIPAS39-205ENST00000553691 MTUS2Q5JR59 1369 aa10.29□□□□□ -0.76
VIPAS39-205ENST00000553691 PSDA5PKW4 1024 aaPredicted RBP10.29□□□□□ -0.76
VIPAS39-205ENST00000553691 PSEN2P49810 448 aa10.29□□□□□ -0.76
VIPAS39-205ENST00000553691 INO80Q9ULG1 1556 aaPredicted RBP10.29□□□□□ -0.76
VIPAS39-205ENST00000553691 KIAA1107Q9UPP5 1409 aa10.28□□□□□ -0.76
VIPAS39-205ENST00000553691 FOSBP53539 338 aa10.28□□□□□ -0.76
VIPAS39-205ENST00000553691 NCOA2Q15596 1464 aa10.28□□□□□ -0.76
VIPAS39-205ENST00000553691 MBD5Q9P267 1494 aa10.28□□□□□ -0.76
VIPAS39-205ENST00000553691 MAP3K1Q13233 1512 aa10.28□□□□□ -0.76
VIPAS39-205ENST00000553691 PIP4K2BP78356 416 aa10.27□□□□□ -0.77
VIPAS39-205ENST00000553691 LRRC9Q6ZRR7 1453 aa10.27□□□□□ -0.77
VIPAS39-205ENST00000553691 AGLP35573 1532 aa10.27□□□□□ -0.77
VIPAS39-205ENST00000553691 CCNB3Q8WWL7 1395 aa10.26□□□□□ -0.77
VIPAS39-205ENST00000553691 PLXNC1O60486 1568 aa10.26□□□□□ -0.77
VIPAS39-205ENST00000553691 TOM1O60784 492 aa10.26□□□□□ -0.77
VIPAS39-205ENST00000553691 LSM11P83369 360 aaKnown RBP eCLIP10.26□□□□□ -0.77
VIPAS39-205ENST00000553691 DDX12PQ92771 950 aa10.26□□□□□ -0.77
VIPAS39-205ENST00000553691 KCNK17Q96T54 332 aa10.26□□□□□ -0.77
VIPAS39-205ENST00000553691 ZNF335Q9H4Z2 1342 aaPredicted RBP10.26□□□□□ -0.77
VIPAS39-205ENST00000553691 NCOA1Q15788 1441 aa10.25□□□□□ -0.77
VIPAS39-205ENST00000553691 DMRTA1Q5VZB9 504 aa10.25□□□□□ -0.77
VIPAS39-205ENST00000553691 ZNF644Q9H582 1327 aaPredicted RBP10.25□□□□□ -0.77
VIPAS39-205ENST00000553691 PLEKHH2Q8IVE3 1493 aa10.24□□□□□ -0.77
VIPAS39-205ENST00000553691 ATP7AQ04656 1500 aa10.24□□□□□ -0.77
VIPAS39-205ENST00000553691 ARHGAP33O14559 1287 aa10.24□□□□□ -0.77
VIPAS39-205ENST00000553691 PBX2P40425 430 aa10.24□□□□□ -0.77
VIPAS39-205ENST00000553691 KCNV2Q8TDN2 545 aa10.24□□□□□ -0.77
VIPAS39-205ENST00000553691 ADAM33Q9BZ11 813 aa10.24□□□□□ -0.77
VIPAS39-205ENST00000553691 PCDHGA10Q9Y5H3 936 aa10.24□□□□□ -0.77
VIPAS39-205ENST00000553691 CAMSAP1Q5T5Y3 1602 aa10.24□□□□□ -0.77
VIPAS39-205ENST00000553691 HNRNPMP52272 730 aaKnown RBP eCLIP10.23□□□□□ -0.77
VIPAS39-205ENST00000553691 KANK4Q5T7N3 995 aaPredicted RBP10.23□□□□□ -0.77
VIPAS39-205ENST00000553691 CFDP1Q9UEE9 299 aaPredicted RBP10.23□□□□□ -0.77
VIPAS39-205ENST00000553691 CAMSAP2Q08AD1 1489 aa10.23□□□□□ -0.77
VIPAS39-205ENST00000553691 PDIA6Q15084 440 aa10.22□□□□□ -0.77
VIPAS39-205ENST00000553691 ZDHHC16Q969W1 377 aa10.22□□□□□ -0.77
VIPAS39-205ENST00000553691 ADGBQ8N7X0 1667 aa10.22□□□□□ -0.77
VIPAS39-205ENST00000553691 MMRN1Q13201 1228 aa10.21□□□□□ -0.77
VIPAS39-205ENST00000553691 ZNF777Q9ULD5 760 aaPredicted RBP10.21□□□□□ -0.77
VIPAS39-205ENST00000553691 SRCAPQ6ZRS2 3230 aa10.2□□□□□ -0.78
VIPAS39-205ENST00000553691 ARHGEF5Q12774 1597 aa10.2□□□□□ -0.78
VIPAS39-205ENST00000553691 RBM33Q96EV2 1170 aaKnown RBP10.2□□□□□ -0.78
VIPAS39-205ENST00000553691 BCL2L12Q9HB09 334 aa10.2□□□□□ -0.78
VIPAS39-205ENST00000553691 SPAG9O60271 1321 aaKnown RBP10.19□□□□□ -0.78
VIPAS39-205ENST00000553691 GRXCR2A6NFK2 248 aa10.19□□□□□ -0.78
VIPAS39-205ENST00000553691 PHF14O94880 888 aa10.19□□□□□ -0.78
VIPAS39-205ENST00000553691 KDM2AQ9Y2K7 1162 aa10.19□□□□□ -0.78
VIPAS39-205ENST00000553691 A2MP01023 1474 aa10.18□□□□□ -0.78
VIPAS39-205ENST00000553691 CCDC141Q6ZP82 1450 aa10.18□□□□□ -0.78
VIPAS39-205ENST00000553691 RTEL1-TNFRSF6BF6WH68 1400 aa10.18□□□□□ -0.78
VIPAS39-205ENST00000553691 SPDYE16A6NNV3 312 aaPredicted RBP10.18□□□□□ -0.78
VIPAS39-205ENST00000553691 PTPREP23469 700 aa10.18□□□□□ -0.78
VIPAS39-205ENST00000553691 NBR1Q14596 966 aa10.18□□□□□ -0.78
VIPAS39-205ENST00000553691 TYW1BQ6NUM6 668 aa10.18□□□□□ -0.78
VIPAS39-205ENST00000553691 ZNF142P52746 1687 aaPredicted RBP10.18□□□□□ -0.78
VIPAS39-205ENST00000553691 CNTLNQ9NXG0 1405 aa10.17□□□□□ -0.78
VIPAS39-205ENST00000553691 MROH2AA6NES4 1674 aa10.17□□□□□ -0.78
VIPAS39-205ENST00000553691 MAST1Q9Y2H9 1570 aa10.17□□□□□ -0.78
VIPAS39-205ENST00000553691 MYOM3Q5VTT5 1437 aa10.16□□□□□ -0.78
VIPAS39-205ENST00000553691 POLR1AO95602 1720 aaPredicted RBP10.16□□□□□ -0.78
VIPAS39-205ENST00000553691 ADGRD1Q6QNK2 874 aa10.16□□□□□ -0.78
VIPAS39-205ENST00000553691 RGS17Q9UGC6 210 aaPredicted RBP10.16□□□□□ -0.78
VIPAS39-205ENST00000553691 ARIH1Q9Y4X5 557 aaPredicted RBP10.16□□□□□ -0.78
VIPAS39-205ENST00000553691 MIA2Q96PC5 1412 aa10.16□□□□□ -0.78
VIPAS39-205ENST00000553691 PTGER2P43116 358 aa10.15□□□□□ -0.78
VIPAS39-205ENST00000553691 EPAS1Q99814 870 aa10.14□□□□□ -0.79
VIPAS39-205ENST00000553691 CROCC2H7BZ55 1655 aa10.14□□□□□ -0.79
VIPAS39-205ENST00000553691 CLTCQ00610 1675 aaKnown RBP10.14□□□□□ -0.79
VIPAS39-205ENST00000553691 NPATQ14207 1427 aa10.14□□□□□ -0.79
VIPAS39-205ENST00000553691 ALKQ9UM73 1620 aa10.14□□□□□ -0.79
VIPAS39-205ENST00000553691 COL9A1P20849 921 aa10.13□□□□□ -0.79
VIPAS39-205ENST00000553691 PRIM1P49642 420 aaKnown RBP10.13□□□□□ -0.79
VIPAS39-205ENST00000553691 ARHGEF1Q92888 912 aaKnown RBP10.13□□□□□ -0.79
VIPAS39-205ENST00000553691 FBXW7Q969H0 707 aa10.13□□□□□ -0.79
VIPAS39-205ENST00000553691 MYO3AQ8NEV4 1616 aa10.13□□□□□ -0.79
VIPAS39-205ENST00000553691 PTPN23Q9H3S7 1636 aa10.13□□□□□ -0.79
VIPAS39-205ENST00000553691 PTPRKQ15262 1439 aa10.13□□□□□ -0.79
VIPAS39-205ENST00000553691 DHX29Q7Z478 1369 aaKnown RBP10.13□□□□□ -0.79
VIPAS39-205ENST00000553691 TCOF1Q13428 1488 aaKnown RBP10.12□□□□□ -0.79
VIPAS39-205ENST00000553691 CPS1P31327 1500 aa10.12□□□□□ -0.79
VIPAS39-205ENST00000553691 MROH1Q8NDA8 1641 aa10.11□□□□□ -0.79
VIPAS39-205ENST00000553691 PLA2R1Q13018 1463 aa10.11□□□□□ -0.79
VIPAS39-205ENST00000553691 MAP3K7O43318 606 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms