RNA–Protein interactions for RNA: ENST00000553605.1

PRPF39-204, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-204ENST00000553605 UNC5CLQ8IV45 518 aa21.36■■□□□ 1.01
PRPF39-204ENST00000553605 ROBO2Q9HCK4 1378 aa21.35■■□□□ 1.01
PRPF39-204ENST00000553605 ESCO1Q5FWF5 840 aa21.34■■□□□ 1.01
PRPF39-204ENST00000553605 RALGAPBQ86X10 1494 aa21.33■■□□□ 1.01
PRPF39-204ENST00000553605 MARF1Q9Y4F3 1742 aaKnown RBP21.33■■□□□ 1.01
PRPF39-204ENST00000553605 GLI3P10071 1580 aa21.31■■□□□ 1
PRPF39-204ENST00000553605 PSDA5PKW4 1024 aaPredicted RBP21.31■■□□□ 1
PRPF39-204ENST00000553605 FOXO3O43524 673 aa21.31■■□□□ 1
PRPF39-204ENST00000553605 XPCQ01831 940 aaPredicted RBP21.31■■□□□ 1
PRPF39-204ENST00000553605 SEPT12Q8IYM1 358 aa21.3■■□□□ 1
PRPF39-204ENST00000553605 PXDNQ92626 1479 aa21.3■■□□□ 1
PRPF39-204ENST00000553605 NEXMIFQ5QGS0 1516 aa21.29■■□□□ 1
PRPF39-204ENST00000553605 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.29■■□□□ 1
PRPF39-204ENST00000553605 ROCK1Q13464 1354 aa21.29■■□□□ 1
PRPF39-204ENST00000553605 HRCP23327 699 aa21.29■■□□□ 1
PRPF39-204ENST00000553605 SLIT2O94813 1529 aa21.28■■□□□ 1
PRPF39-204ENST00000553605 BRWD3Q6RI45 1802 aa21.27■■□□□ 1
PRPF39-204ENST00000553605 SPHKAPQ2M3C7 1700 aa21.27■■□□□ 1
PRPF39-204ENST00000553605 HFM1A2PYH4 1435 aa21.26■□□□□ 0.99
PRPF39-204ENST00000553605 LRPPRCP42704 1394 aaKnown RBP21.25■□□□□ 0.99
PRPF39-204ENST00000553605 VGFO15240 615 aaPredicted RBP21.25■□□□□ 0.99
PRPF39-204ENST00000553605 PRAG1Q86YV5 1406 aa21.24■□□□□ 0.99
PRPF39-204ENST00000553605 BAG6P46379 1132 aa21.24■□□□□ 0.99
PRPF39-204ENST00000553605 KRT27Q7Z3Y8 459 aa21.24■□□□□ 0.99
PRPF39-204ENST00000553605 ONECUT3O60422 494 aaPredicted RBP21.23■□□□□ 0.99
PRPF39-204ENST00000553605 VPS72Q15906 364 aa21.22■□□□□ 0.99
PRPF39-204ENST00000553605 CCDC9Q9Y3X0 531 aaKnown RBP21.2■□□□□ 0.98
PRPF39-204ENST00000553605 SPATA31A3Q5VYP0 1347 aa21.2■□□□□ 0.98
PRPF39-204ENST00000553605 CLTCL1P53675 1640 aa21.19■□□□□ 0.98
PRPF39-204ENST00000553605 NUTM2FA1L443 756 aa21.19■□□□□ 0.98
PRPF39-204ENST00000553605 CDC42BPGQ6DT37 1551 aa21.19■□□□□ 0.98
PRPF39-204ENST00000553605 HAP1P54257 671 aaPredicted RBP21.17■□□□□ 0.98
PRPF39-204ENST00000553605 USP32Q8NFA0 1604 aa21.15■□□□□ 0.98
PRPF39-204ENST00000553605 ITGAEP38570 1179 aa21.15■□□□□ 0.98
PRPF39-204ENST00000553605 EN1Q05925 392 aaPredicted RBP21.15■□□□□ 0.98
PRPF39-204ENST00000553605 R3HDM1Q15032 1099 aaKnown RBP21.15■□□□□ 0.98
PRPF39-204ENST00000553605 KIF1BO60333 1816 aa21.15■□□□□ 0.98
PRPF39-204ENST00000553605 A0A0G2JS52 829 aa21.14■□□□□ 0.97
PRPF39-204ENST00000553605 MYT1Q01538 1121 aa21.14■□□□□ 0.97
PRPF39-204ENST00000553605 KRT28Q7Z3Y7 464 aa21.14■□□□□ 0.97
PRPF39-204ENST00000553605 NAIPQ13075 1403 aa21.13■□□□□ 0.97
PRPF39-204ENST00000553605 RPGRIP1LQ68CZ1 1315 aa21.13■□□□□ 0.97
PRPF39-204ENST00000553605 YY1P25490 414 aa21.12■□□□□ 0.97
PRPF39-204ENST00000553605 CABLES1Q8TDN4 633 aa21.12■□□□□ 0.97
PRPF39-204ENST00000553605 WAPLQ7Z5K2 1190 aa21.11■□□□□ 0.97
PRPF39-204ENST00000553605 CCDC144AA2RUR9 1427 aa21.11■□□□□ 0.97
PRPF39-204ENST00000553605 PLEKHG5O94827 1062 aa21.1■□□□□ 0.97
PRPF39-204ENST00000553605 FAM98CQ17RN3 349 aaKnown RBP21.08■□□□□ 0.97
PRPF39-204ENST00000553605 STK26Q9P289 416 aa21.08■□□□□ 0.97
PRPF39-204ENST00000553605 NWD2Q9ULI1 1742 aa21.08■□□□□ 0.97
PRPF39-204ENST00000553605 PSME1Q06323 249 aa21.07■□□□□ 0.96
PRPF39-204ENST00000553605 PLCH1Q4KWH8 1693 aa21.06■□□□□ 0.96
PRPF39-204ENST00000553605 FAM83GA6ND36 823 aa21.06■□□□□ 0.96
PRPF39-204ENST00000553605 TNS3Q68CZ2 1445 aa21.05■□□□□ 0.96
PRPF39-204ENST00000553605 FAM182BQ5T319 152 aa21.04■□□□□ 0.96
PRPF39-204ENST00000553605 LMOD2Q6P5Q4 547 aa21.04■□□□□ 0.96
PRPF39-204ENST00000553605 KIF1AQ12756 1690 aa21.04■□□□□ 0.96
PRPF39-204ENST00000553605 EZH2Q15910 746 aaKnown RBP21.03■□□□□ 0.96
PRPF39-204ENST00000553605 RGPD1P0DJD0 1748 aa21.02■□□□□ 0.96
PRPF39-204ENST00000553605 PHF8Q9UPP1 1060 aa21.02■□□□□ 0.96
PRPF39-204ENST00000553605 TECPR2O15040 1411 aa21.02■□□□□ 0.96
PRPF39-204ENST00000553605 PLEKHH1Q9ULM0 1364 aa21.01■□□□□ 0.95
PRPF39-204ENST00000553605 DISP2A7MBM2 1401 aa21.01■□□□□ 0.95
PRPF39-204ENST00000553605 FMN2Q9NZ56 1722 aa21.01■□□□□ 0.95
PRPF39-204ENST00000553605 PPLO60437 1756 aa21■□□□□ 0.95
PRPF39-204ENST00000553605 BTG4Q9NY30 223 aa21■□□□□ 0.95
PRPF39-204ENST00000553605 SBNO1A3KN83 1393 aa20.99■□□□□ 0.95
PRPF39-204ENST00000553605 ABCC11Q96J66 1382 aa20.99■□□□□ 0.95
PRPF39-204ENST00000553605 ARHGEF10O15013 1369 aa20.98■□□□□ 0.95
PRPF39-204ENST00000553605 ADGRF5Q8IZF2 1346 aa20.98■□□□□ 0.95
PRPF39-204ENST00000553605 TMEM132EQ6IEE7 984 aa20.97■□□□□ 0.95
PRPF39-204ENST00000553605 CAMKK2Q96RR4 588 aa20.97■□□□□ 0.95
PRPF39-204ENST00000553605 ABCA3Q99758 1704 aa20.95■□□□□ 0.94
PRPF39-204ENST00000553605 NRAPQ86VF7 1730 aa20.94■□□□□ 0.94
PRPF39-204ENST00000553605 SPATA31A5Q5VU36 1347 aa20.94■□□□□ 0.94
PRPF39-204ENST00000553605 SPATA31A7Q8IWB4 1347 aa20.94■□□□□ 0.94
PRPF39-204ENST00000553605 TNS1Q9HBL0 1735 aaKnown RBP20.93■□□□□ 0.94
PRPF39-204ENST00000553605 DCAF8L1A6NGE4 600 aa20.93■□□□□ 0.94
PRPF39-204ENST00000553605 TRIM37O94972 964 aa20.93■□□□□ 0.94
PRPF39-204ENST00000553605 NRXN1Q9ULB1 1477 aa20.92■□□□□ 0.94
PRPF39-204ENST00000553605 RGPD8O14715 1765 aaPredicted RBP20.92■□□□□ 0.94
PRPF39-204ENST00000553605 APBA3O96018 575 aa20.91■□□□□ 0.94
PRPF39-204ENST00000553605 FAM196AQ6ZSG2 479 aa20.91■□□□□ 0.94
PRPF39-204ENST00000553605 SIRT1Q96EB6 747 aa20.91■□□□□ 0.94
PRPF39-204ENST00000553605 RRBP1Q9P2E9 1410 aaKnown RBP20.91■□□□□ 0.94
PRPF39-204ENST00000553605 KNDC1Q76NI1 1749 aa20.9■□□□□ 0.94
PRPF39-204ENST00000553605 PARD3Q8TEW0 1356 aa20.9■□□□□ 0.94
PRPF39-204ENST00000553605 RGL3Q3MIN7 710 aa20.89■□□□□ 0.93
PRPF39-204ENST00000553605 PMFBP1Q8TBY8 1022 aa20.89■□□□□ 0.93
PRPF39-204ENST00000553605 SLC4A1APQ9BWU0 796 aaKnown RBP20.89■□□□□ 0.93
PRPF39-204ENST00000553605 PPP1R1BQ9UD71 204 aaPredicted RBP20.89■□□□□ 0.93
PRPF39-204ENST00000553605 ADGRB2O60241 1585 aa20.89■□□□□ 0.93
PRPF39-204ENST00000553605 YTHDC2Q9H6S0 1430 aaKnown RBP20.88■□□□□ 0.93
PRPF39-204ENST00000553605 COL14A1Q05707 1796 aaKnown RBP20.88■□□□□ 0.93
PRPF39-204ENST00000553605 NBPF8Q3BBV2 869 aa20.88■□□□□ 0.93
PRPF39-204ENST00000553605 NBPF14Q5TI25 921 aa20.88■□□□□ 0.93
PRPF39-204ENST00000553605 THSD7AQ9UPZ6 1657 aa20.87■□□□□ 0.93
PRPF39-204ENST00000553605 IFT172Q9UG01 1749 aa20.87■□□□□ 0.93
PRPF39-204ENST00000553605 SPON1Q9HCB6 807 aa20.86■□□□□ 0.93
PRPF39-204ENST00000553605 ANKRD30BQ9BXX2 1392 aa20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms