RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 ZNF777Q9ULD5 760 aaPredicted RBP8.59□□□□□ -1.03
VIPAS39-204ENST00000553576 C9orf84Q5VXU9 1444 aa8.59□□□□□ -1.03
VIPAS39-204ENST00000553576 TTC37Q6PGP7 1564 aa8.59□□□□□ -1.03
VIPAS39-204ENST00000553576 KDM5DQ9BY66 1539 aa8.59□□□□□ -1.03
VIPAS39-204ENST00000553576 RPRD2Q5VT52 1461 aaKnown RBP8.58□□□□□ -1.04
VIPAS39-204ENST00000553576 CCDC141Q6ZP82 1450 aa8.58□□□□□ -1.04
VIPAS39-204ENST00000553576 PLCH2O75038 1416 aa8.58□□□□□ -1.04
VIPAS39-204ENST00000553576 ANKRD50Q9ULJ7 1429 aa8.58□□□□□ -1.04
VIPAS39-204ENST00000553576 ITGBL1O95965 494 aaPredicted RBP8.58□□□□□ -1.04
VIPAS39-204ENST00000553576 Q6ZNB5 142 aa8.58□□□□□ -1.04
VIPAS39-204ENST00000553576 NBPF3Q9H094 633 aa8.58□□□□□ -1.04
VIPAS39-204ENST00000553576 HNRNPMP52272 730 aaKnown RBP eCLIP8.56□□□□□ -1.04
VIPAS39-204ENST00000553576 PLXNC1O60486 1568 aa8.56□□□□□ -1.04
VIPAS39-204ENST00000553576 ARHGAP5Q13017 1502 aa8.55□□□□□ -1.04
VIPAS39-204ENST00000553576 EFCAB2Q5VUJ9 269 aa8.54□□□□□ -1.04
VIPAS39-204ENST00000553576 ADAM33Q9BZ11 813 aa8.54□□□□□ -1.04
VIPAS39-204ENST00000553576 KIF15Q9NS87 1388 aa8.53□□□□□ -1.04
VIPAS39-204ENST00000553576 CENPBP07199 599 aaPredicted RBP8.53□□□□□ -1.04
VIPAS39-204ENST00000553576 L3MBTL2Q969R5 705 aa8.53□□□□□ -1.04
VIPAS39-204ENST00000553576 ANO8Q9HCE9 1232 aaPredicted RBP8.53□□□□□ -1.04
VIPAS39-204ENST00000553576 ABCA9Q8IUA7 1624 aa8.53□□□□□ -1.04
VIPAS39-204ENST00000553576 SYCP2Q9BX26 1530 aa8.53□□□□□ -1.04
VIPAS39-204ENST00000553576 RTEL1-TNFRSF6BF6WH68 1400 aa8.53□□□□□ -1.04
VIPAS39-204ENST00000553576 UNC13BO14795 1591 aa8.52□□□□□ -1.04
VIPAS39-204ENST00000553576 TEX14Q8IWB6 1497 aa8.52□□□□□ -1.05
VIPAS39-204ENST00000553576 ZDHHC16Q969W1 377 aa8.52□□□□□ -1.05
VIPAS39-204ENST00000553576 ABCC1P33527 1531 aa8.52□□□□□ -1.05
VIPAS39-204ENST00000553576 WDR7Q9Y4E6 1490 aa8.51□□□□□ -1.05
VIPAS39-204ENST00000553576 DUOX2Q9NRD8 1548 aa8.51□□□□□ -1.05
VIPAS39-204ENST00000553576 ARHGEF12Q9NZN5 1544 aa8.51□□□□□ -1.05
VIPAS39-204ENST00000553576 PPP1R15BQ5SWA1 713 aa8.51□□□□□ -1.05
VIPAS39-204ENST00000553576 ANKK1Q8NFD2 765 aa8.51□□□□□ -1.05
VIPAS39-204ENST00000553576 CRISPLD2Q9H0B8 497 aa8.51□□□□□ -1.05
VIPAS39-204ENST00000553576 POLR1AO95602 1720 aaPredicted RBP8.51□□□□□ -1.05
VIPAS39-204ENST00000553576 NUP155O75694 1391 aa8.5□□□□□ -1.05
VIPAS39-204ENST00000553576 HS6ST3Q8IZP7 471 aa8.5□□□□□ -1.05
VIPAS39-204ENST00000553576 IQGAP3Q86VI3 1631 aa8.5□□□□□ -1.05
VIPAS39-204ENST00000553576 EVI5O60447 810 aa8.49□□□□□ -1.05
VIPAS39-204ENST00000553576 BCAMP50895 628 aa8.49□□□□□ -1.05
VIPAS39-204ENST00000553576 RABGEF1Q9UJ41 708 aa8.49□□□□□ -1.05
VIPAS39-204ENST00000553576 FAM135AQ9P2D6 1515 aa8.49□□□□□ -1.05
VIPAS39-204ENST00000553576 UHRF1BP1Q6BDS2 1440 aa8.48□□□□□ -1.05
VIPAS39-204ENST00000553576 ERBINQ96RT1 1412 aa8.48□□□□□ -1.05
VIPAS39-204ENST00000553576 PPP1R3GB7ZBB8 358 aa8.48□□□□□ -1.05
VIPAS39-204ENST00000553576 EIF4G2P78344 907 aaKnown RBP eCLIP8.48□□□□□ -1.05
VIPAS39-204ENST00000553576 MAGI2Q86UL8 1455 aa8.48□□□□□ -1.05
VIPAS39-204ENST00000553576 SPATA31E1Q6ZUB1 1445 aa8.47□□□□□ -1.05
VIPAS39-204ENST00000553576 ATP10AO60312 1499 aa8.47□□□□□ -1.05
VIPAS39-204ENST00000553576 LCE2BO14633 110 aa8.47□□□□□ -1.05
VIPAS39-204ENST00000553576 NBPF8Q3BBV2 869 aa8.47□□□□□ -1.05
VIPAS39-204ENST00000553576 ASXL2Q76L83 1435 aa8.46□□□□□ -1.05
VIPAS39-204ENST00000553576 SOWAHBA6NEL2 793 aa8.46□□□□□ -1.06
VIPAS39-204ENST00000553576 DDX10Q13206 875 aaKnown RBP8.46□□□□□ -1.06
VIPAS39-204ENST00000553576 PROX2Q3B8N5 592 aa8.46□□□□□ -1.06
VIPAS39-204ENST00000553576 NYAP1Q6ZVC0 841 aa8.46□□□□□ -1.06
VIPAS39-204ENST00000553576 TRAPPC8Q9Y2L5 1435 aa8.46□□□□□ -1.06
VIPAS39-204ENST00000553576 DEPDC5O75140 1603 aa8.45□□□□□ -1.06
VIPAS39-204ENST00000553576 CCER2I3L3R5 266 aa8.45□□□□□ -1.06
VIPAS39-204ENST00000553576 HSPA5P11021 654 aaKnown RBP8.45□□□□□ -1.06
VIPAS39-204ENST00000553576 LAPTM4AQ15012 233 aa8.45□□□□□ -1.06
VIPAS39-204ENST00000553576 FANCAO15360 1455 aa8.45□□□□□ -1.06
VIPAS39-204ENST00000553576 INO80Q9ULG1 1556 aaPredicted RBP8.44□□□□□ -1.06
VIPAS39-204ENST00000553576 KCNC4Q03721 635 aa8.44□□□□□ -1.06
VIPAS39-204ENST00000553576 NCKAP5LQ9HCH0 1330 aa8.44□□□□□ -1.06
VIPAS39-204ENST00000553576 CFAP74Q9C0B2 1584 aa8.44□□□□□ -1.06
VIPAS39-204ENST00000553576 EIF2AK4Q9P2K8 1649 aaKnown RBP8.43□□□□□ -1.06
VIPAS39-204ENST00000553576 COL9A1P20849 921 aa8.43□□□□□ -1.06
VIPAS39-204ENST00000553576 LAPTM4BQ86VI4 370 aa8.43□□□□□ -1.06
VIPAS39-204ENST00000553576 WBP1LQ9NX94 342 aa8.43□□□□□ -1.06
VIPAS39-204ENST00000553576 SPAG9O60271 1321 aaKnown RBP8.43□□□□□ -1.06
VIPAS39-204ENST00000553576 ZFYVE16Q7Z3T8 1539 aa8.43□□□□□ -1.06
VIPAS39-204ENST00000553576 HIRIP3Q9BW71 556 aaPredicted RBP8.42□□□□□ -1.06
VIPAS39-204ENST00000553576 ARID4BQ4LE39 1312 aaPredicted RBP8.42□□□□□ -1.06
VIPAS39-204ENST00000553576 PLA2R1Q13018 1463 aa8.42□□□□□ -1.06
VIPAS39-204ENST00000553576 VWDEQ8N2E2 1590 aa8.42□□□□□ -1.06
VIPAS39-204ENST00000553576 KIDINS220Q9ULH0 1771 aa8.41□□□□□ -1.06
VIPAS39-204ENST00000553576 ATP7AQ04656 1500 aa8.41□□□□□ -1.06
VIPAS39-204ENST00000553576 RALGAPBQ86X10 1494 aa8.41□□□□□ -1.06
VIPAS39-204ENST00000553576 WASHC2AQ641Q2 1341 aa8.41□□□□□ -1.06
VIPAS39-204ENST00000553576 TRAF7Q6Q0C0 670 aa8.41□□□□□ -1.06
VIPAS39-204ENST00000553576 AFAP1Q8N556 730 aa8.41□□□□□ -1.06
VIPAS39-204ENST00000553576 ZFRQ96KR1 1074 aaKnown RBP8.41□□□□□ -1.06
VIPAS39-204ENST00000553576 PCDHGA10Q9Y5H3 936 aa8.41□□□□□ -1.06
VIPAS39-204ENST00000553576 TET3O43151 1660 aa8.4□□□□□ -1.06
VIPAS39-204ENST00000553576 KDM5CP41229 1560 aa8.4□□□□□ -1.06
VIPAS39-204ENST00000553576 ADGRL1O94910 1474 aa8.4□□□□□ -1.06
VIPAS39-204ENST00000553576 SCAPERQ9BY12 1400 aa8.4□□□□□ -1.06
VIPAS39-204ENST00000553576 DHX29Q7Z478 1369 aaKnown RBP8.4□□□□□ -1.06
VIPAS39-204ENST00000553576 ANP32CO43423 234 aa8.4□□□□□ -1.06
VIPAS39-204ENST00000553576 NKX1-1Q15270 411 aaPredicted RBP8.4□□□□□ -1.06
VIPAS39-204ENST00000553576 BCORL1Q5H9F3 1711 aa8.4□□□□□ -1.07
VIPAS39-204ENST00000553576 E9PCH4 1651 aa8.4□□□□□ -1.07
VIPAS39-204ENST00000553576 NEURL4Q96JN8 1562 aa8.39□□□□□ -1.07
VIPAS39-204ENST00000553576 CCDC144AA2RUR9 1427 aa8.39□□□□□ -1.07
VIPAS39-204ENST00000553576 CCDC7Q96M83 1385 aa8.39□□□□□ -1.07
VIPAS39-204ENST00000553576 GFRA3O60609 400 aa8.39□□□□□ -1.07
VIPAS39-204ENST00000553576 PDE4AP27815 886 aa8.39□□□□□ -1.07
VIPAS39-204ENST00000553576 LAMC1P11047 1609 aa8.39□□□□□ -1.07
VIPAS39-204ENST00000553576 TRPM1Q7Z4N2 1603 aa8.39□□□□□ -1.07
VIPAS39-204ENST00000553576 ZNF518AQ6AHZ1 1483 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms