RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 NAIPQ13075 1403 aa17.78■□□□□ 0.44
SRP54-203ENST00000553544 SPHKAPQ2M3C7 1700 aa17.78■□□□□ 0.44
SRP54-203ENST00000553544 NALCNQ8IZF0 1738 aa17.77■□□□□ 0.44
SRP54-203ENST00000553544 HFM1A2PYH4 1435 aa17.76■□□□□ 0.43
SRP54-203ENST00000553544 LRPPRCP42704 1394 aaKnown RBP17.76■□□□□ 0.43
SRP54-203ENST00000553544 LAMC1P11047 1609 aa17.76■□□□□ 0.43
SRP54-203ENST00000553544 BCL9LQ86UU0 1499 aa17.75■□□□□ 0.43
SRP54-203ENST00000553544 XPCQ01831 940 aaPredicted RBP17.75■□□□□ 0.43
SRP54-203ENST00000553544 UNC5CLQ8IV45 518 aa17.74■□□□□ 0.43
SRP54-203ENST00000553544 EP400Q96L91 3159 aa17.74■□□□□ 0.43
SRP54-203ENST00000553544 CLTCL1P53675 1640 aa17.72■□□□□ 0.43
SRP54-203ENST00000553544 MYOM2P54296 1465 aa17.72■□□□□ 0.43
SRP54-203ENST00000553544 PRAG1Q86YV5 1406 aa17.72■□□□□ 0.43
SRP54-203ENST00000553544 STK26Q9P289 416 aa17.71■□□□□ 0.43
SRP54-203ENST00000553544 NUTM2FA1L443 756 aa17.7■□□□□ 0.42
SRP54-203ENST00000553544 SF3B2Q13435 895 aaKnown RBP17.7■□□□□ 0.42
SRP54-203ENST00000553544 WAPLQ7Z5K2 1190 aa17.7■□□□□ 0.42
SRP54-203ENST00000553544 SLC4A1APQ9BWU0 796 aaKnown RBP17.7■□□□□ 0.42
SRP54-203ENST00000553544 KIF1BO60333 1816 aa17.69■□□□□ 0.42
SRP54-203ENST00000553544 COL22A1Q8NFW1 1626 aaPredicted RBP17.69■□□□□ 0.42
SRP54-203ENST00000553544 PXDNQ92626 1479 aa17.67■□□□□ 0.42
SRP54-203ENST00000553544 BLMP54132 1417 aaPredicted RBP17.66■□□□□ 0.42
SRP54-203ENST00000553544 KRT28Q7Z3Y7 464 aa17.66■□□□□ 0.42
SRP54-203ENST00000553544 SPATA31A3Q5VYP0 1347 aa17.66■□□□□ 0.42
SRP54-203ENST00000553544 HAP1P54257 671 aaPredicted RBP17.65■□□□□ 0.42
SRP54-203ENST00000553544 DEFB132Q7Z7B7 95 aa17.65■□□□□ 0.42
SRP54-203ENST00000553544 SEPT12Q8IYM1 358 aa17.65■□□□□ 0.42
SRP54-203ENST00000553544 PSME1Q06323 249 aa17.64■□□□□ 0.41
SRP54-203ENST00000553544 RGL3Q3MIN7 710 aa17.64■□□□□ 0.41
SRP54-203ENST00000553544 ADGRF5Q8IZF2 1346 aa17.64■□□□□ 0.41
SRP54-203ENST00000553544 RALGAPBQ86X10 1494 aa17.63■□□□□ 0.41
SRP54-203ENST00000553544 ONECUT3O60422 494 aaPredicted RBP17.63■□□□□ 0.41
SRP54-203ENST00000553544 VPS72Q15906 364 aa17.63■□□□□ 0.41
SRP54-203ENST00000553544 TMEM132EQ6IEE7 984 aa17.63■□□□□ 0.41
SRP54-203ENST00000553544 CCDC9Q9Y3X0 531 aaKnown RBP17.62■□□□□ 0.41
SRP54-203ENST00000553544 ABCC11Q96J66 1382 aa17.62■□□□□ 0.41
SRP54-203ENST00000553544 CDC42BPGQ6DT37 1551 aa17.62■□□□□ 0.41
SRP54-203ENST00000553544 SLIT2O94813 1529 aa17.61■□□□□ 0.41
SRP54-203ENST00000553544 KRT27Q7Z3Y8 459 aa17.6■□□□□ 0.41
SRP54-203ENST00000553544 SIRT1Q96EB6 747 aa17.6■□□□□ 0.41
SRP54-203ENST00000553544 CABLES1Q8TDN4 633 aa17.59■□□□□ 0.41
SRP54-203ENST00000553544 PHF8Q9UPP1 1060 aa17.59■□□□□ 0.41
SRP54-203ENST00000553544 CCDC144AA2RUR9 1427 aa17.58■□□□□ 0.41
SRP54-203ENST00000553544 TECPR2O15040 1411 aa17.58■□□□□ 0.41
SRP54-203ENST00000553544 ANKRD30BQ9BXX2 1392 aa17.58■□□□□ 0.4
SRP54-203ENST00000553544 PLEKHG5O94827 1062 aa17.58■□□□□ 0.4
SRP54-203ENST00000553544 LMOD2Q6P5Q4 547 aa17.58■□□□□ 0.4
SRP54-203ENST00000553544 PLEKHH1Q9ULM0 1364 aa17.57■□□□□ 0.4
SRP54-203ENST00000553544 MARF1Q9Y4F3 1742 aaKnown RBP17.55■□□□□ 0.4
SRP54-203ENST00000553544 GLI3P10071 1580 aa17.55■□□□□ 0.4
SRP54-203ENST00000553544 FAM83GA6ND36 823 aa17.55■□□□□ 0.4
SRP54-203ENST00000553544 BAG6P46379 1132 aa17.55■□□□□ 0.4
SRP54-203ENST00000553544 PPLO60437 1756 aa17.54■□□□□ 0.4
SRP54-203ENST00000553544 A0A0G2JS52 829 aa17.54■□□□□ 0.4
SRP54-203ENST00000553544 MYT1Q01538 1121 aa17.54■□□□□ 0.4
SRP54-203ENST00000553544 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.52■□□□□ 0.4
SRP54-203ENST00000553544 PSDA5PKW4 1024 aaPredicted RBP17.52■□□□□ 0.4
SRP54-203ENST00000553544 C14orf93Q9H972 538 aaKnown RBP17.52■□□□□ 0.4
SRP54-203ENST00000553544 YTHDC2Q9H6S0 1430 aaKnown RBP17.52■□□□□ 0.4
SRP54-203ENST00000553544 SBNO1A3KN83 1393 aa17.52■□□□□ 0.39
SRP54-203ENST00000553544 ARHGEF10O15013 1369 aa17.52■□□□□ 0.39
SRP54-203ENST00000553544 HRCP23327 699 aa17.51■□□□□ 0.39
SRP54-203ENST00000553544 TNS3Q68CZ2 1445 aa17.51■□□□□ 0.39
SRP54-203ENST00000553544 MPHOSPH9Q99550 1183 aa17.51■□□□□ 0.39
SRP54-203ENST00000553544 SPATA31E1Q6ZUB1 1445 aa17.5■□□□□ 0.39
SRP54-203ENST00000553544 FAM98CQ17RN3 349 aaKnown RBP17.5■□□□□ 0.39
SRP54-203ENST00000553544 DHX57Q6P158 1386 aaKnown RBP17.5■□□□□ 0.39
SRP54-203ENST00000553544 ACIN1Q9UKV3 1341 aaKnown RBP17.49■□□□□ 0.39
SRP54-203ENST00000553544 PMFBP1Q8TBY8 1022 aa17.49■□□□□ 0.39
SRP54-203ENST00000553544 BTG4Q9NY30 223 aa17.49■□□□□ 0.39
SRP54-203ENST00000553544 USP32Q8NFA0 1604 aa17.48■□□□□ 0.39
SRP54-203ENST00000553544 SAFB2Q14151 953 aaKnown RBP eCLIP17.48■□□□□ 0.39
SRP54-203ENST00000553544 PRAM1Q96QH2 718 aa17.48■□□□□ 0.39
SRP54-203ENST00000553544 POGKQ9P215 609 aa17.48■□□□□ 0.39
SRP54-203ENST00000553544 PIK3C2GO75747 1445 aa17.47■□□□□ 0.39
SRP54-203ENST00000553544 EN1Q05925 392 aaPredicted RBP17.47■□□□□ 0.39
SRP54-203ENST00000553544 CFAP70Q5T0N1 1121 aa17.47■□□□□ 0.39
SRP54-203ENST00000553544 KIF1AQ12756 1690 aa17.47■□□□□ 0.39
SRP54-203ENST00000553544 BRWD3Q6RI45 1802 aa17.47■□□□□ 0.39
SRP54-203ENST00000553544 FMN2Q9NZ56 1722 aa17.45■□□□□ 0.38
SRP54-203ENST00000553544 IFT172Q9UG01 1749 aa17.45■□□□□ 0.38
SRP54-203ENST00000553544 NRXN1Q9ULB1 1477 aa17.44■□□□□ 0.38
SRP54-203ENST00000553544 RAB3GAP2Q9H2M9 1393 aa17.43■□□□□ 0.38
SRP54-203ENST00000553544 GPRASP1Q5JY77 1395 aa17.42■□□□□ 0.38
SRP54-203ENST00000553544 R3HDM1Q15032 1099 aaKnown RBP17.42■□□□□ 0.38
SRP54-203ENST00000553544 FAM182BQ5T319 152 aa17.42■□□□□ 0.38
SRP54-203ENST00000553544 SPATA31A5Q5VU36 1347 aa17.42■□□□□ 0.38
SRP54-203ENST00000553544 SPATA31A7Q8IWB4 1347 aa17.42■□□□□ 0.38
SRP54-203ENST00000553544 NWD2Q9ULI1 1742 aa17.41■□□□□ 0.38
SRP54-203ENST00000553544 KNDC1Q76NI1 1749 aa17.41■□□□□ 0.38
SRP54-203ENST00000553544 LRP5O75197 1615 aa17.4■□□□□ 0.38
SRP54-203ENST00000553544 ANKARQ7Z5J8 1434 aa17.38■□□□□ 0.37
SRP54-203ENST00000553544 PAK3O75914 559 aaPredicted RBP17.38■□□□□ 0.37
SRP54-203ENST00000553544 FAM196AQ6ZSG2 479 aa17.38■□□□□ 0.37
SRP54-203ENST00000553544 NGDNQ8NEJ9 315 aaKnown RBP17.38■□□□□ 0.37
SRP54-203ENST00000553544 HIRIP3Q9BW71 556 aaPredicted RBP17.38■□□□□ 0.37
SRP54-203ENST00000553544 PRDM11Q9NQV5 511 aa17.38■□□□□ 0.37
SRP54-203ENST00000553544 PLCH1Q4KWH8 1693 aa17.37■□□□□ 0.37
SRP54-203ENST00000553544 EZH2Q15910 746 aaKnown RBP17.37■□□□□ 0.37
SRP54-203ENST00000553544 TRAK1Q9UPV9 953 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms