RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 CENPJQ9HC77 1338 aaPredicted RBP9.76□□□□□ -0.85
LIMA1-213ENST00000552720 ADGRB3O60242 1522 aa9.76□□□□□ -0.85
LIMA1-213ENST00000552720 IGHDP01880 384 aa9.76□□□□□ -0.85
LIMA1-213ENST00000552720 VIRMAQ69YN4 1812 aaKnown RBP9.76□□□□□ -0.85
LIMA1-213ENST00000552720 E9PSI1 815 aa9.75□□□□□ -0.85
LIMA1-213ENST00000552720 GGT6Q6P531 493 aa9.75□□□□□ -0.85
LIMA1-213ENST00000552720 FAM161AQ3B820 660 aa9.75□□□□□ -0.85
LIMA1-213ENST00000552720 WWC1Q8IX03 1113 aa9.75□□□□□ -0.85
LIMA1-213ENST00000552720 PANK1Q8TE04 598 aa9.75□□□□□ -0.85
LIMA1-213ENST00000552720 NPATQ14207 1427 aa9.74□□□□□ -0.85
LIMA1-213ENST00000552720 TNNQ9UQP3 1299 aa9.74□□□□□ -0.85
LIMA1-213ENST00000552720 SIGLEC1Q9BZZ2 1709 aa9.74□□□□□ -0.85
LIMA1-213ENST00000552720 FRMPD1Q5SYB0 1578 aa9.74□□□□□ -0.85
LIMA1-213ENST00000552720 MORC1Q86VD1 984 aa9.74□□□□□ -0.85
LIMA1-213ENST00000552720 COG6Q9Y2V7 657 aa9.74□□□□□ -0.85
LIMA1-213ENST00000552720 POLR3AO14802 1390 aaPredicted RBP9.74□□□□□ -0.85
LIMA1-213ENST00000552720 ADGRB1O14514 1584 aa9.73□□□□□ -0.85
LIMA1-213ENST00000552720 SETBP1Q9Y6X0 1596 aa9.73□□□□□ -0.85
LIMA1-213ENST00000552720 FRAT1Q92837 279 aaPredicted RBP9.73□□□□□ -0.85
LIMA1-213ENST00000552720 DDRGK1Q96HY6 314 aa9.73□□□□□ -0.85
LIMA1-213ENST00000552720 SBNO2Q9Y2G9 1366 aa9.73□□□□□ -0.85
LIMA1-213ENST00000552720 ZNF518AQ6AHZ1 1483 aa9.73□□□□□ -0.85
LIMA1-213ENST00000552720 LMTK2Q8IWU2 1503 aa9.73□□□□□ -0.85
LIMA1-213ENST00000552720 CANXP27824 592 aaKnown RBP9.72□□□□□ -0.85
LIMA1-213ENST00000552720 TCP11L2Q8N4U5 519 aa9.72□□□□□ -0.85
LIMA1-213ENST00000552720 BCL2L13Q9BXK5 485 aa9.72□□□□□ -0.85
LIMA1-213ENST00000552720 C14orf93Q9H972 538 aaKnown RBP9.72□□□□□ -0.85
LIMA1-213ENST00000552720 MTHFSP49914 203 aa9.71□□□□□ -0.85
LIMA1-213ENST00000552720 MAPK8IP2Q13387 824 aaPredicted RBP9.71□□□□□ -0.85
LIMA1-213ENST00000552720 ARHGEF28Q8N1W1 1705 aaKnown RBP9.71□□□□□ -0.86
LIMA1-213ENST00000552720 GLI2P10070 1586 aa9.71□□□□□ -0.86
LIMA1-213ENST00000552720 MYO5BQ9ULV0 1848 aa9.71□□□□□ -0.86
LIMA1-213ENST00000552720 PPM1GO15355 546 aaPredicted RBP9.71□□□□□ -0.86
LIMA1-213ENST00000552720 SAFB2Q14151 953 aaKnown RBP eCLIP9.71□□□□□ -0.86
LIMA1-213ENST00000552720 IQSEC2Q5JU85 1478 aa9.7□□□□□ -0.86
LIMA1-213ENST00000552720 HECW2Q9P2P5 1572 aa9.7□□□□□ -0.86
LIMA1-213ENST00000552720 SEC24BO95487 1268 aa9.7□□□□□ -0.86
LIMA1-213ENST00000552720 RLBP1P12271 317 aa9.7□□□□□ -0.86
LIMA1-213ENST00000552720 NFKBIBQ15653 356 aa9.7□□□□□ -0.86
LIMA1-213ENST00000552720 CLUAP1Q96AJ1 413 aa9.7□□□□□ -0.86
LIMA1-213ENST00000552720 CAMSAP1Q5T5Y3 1602 aa9.69□□□□□ -0.86
LIMA1-213ENST00000552720 TULP4Q9NRJ4 1543 aa9.69□□□□□ -0.86
LIMA1-213ENST00000552720 IL27Q8NEV9 243 aa9.69□□□□□ -0.86
LIMA1-213ENST00000552720 RUNDC1Q96C34 613 aa9.69□□□□□ -0.86
LIMA1-213ENST00000552720 USP35Q9P2H5 1018 aa9.69□□□□□ -0.86
LIMA1-213ENST00000552720 RARSP54136 660 aaKnown RBP9.68□□□□□ -0.86
LIMA1-213ENST00000552720 PDE3AQ14432 1141 aa9.68□□□□□ -0.86
LIMA1-213ENST00000552720 CABP2Q9NPB3 220 aa9.68□□□□□ -0.86
LIMA1-213ENST00000552720 POGZQ7Z3K3 1410 aa9.68□□□□□ -0.86
LIMA1-213ENST00000552720 ABCC3O15438 1527 aa9.68□□□□□ -0.86
LIMA1-213ENST00000552720 CGNL1Q0VF96 1302 aa9.68□□□□□ -0.86
LIMA1-213ENST00000552720 USP32Q8NFA0 1604 aa9.68□□□□□ -0.86
LIMA1-213ENST00000552720 DAXXQ9UER7 740 aaPredicted RBP9.68□□□□□ -0.86
LIMA1-213ENST00000552720 CD109Q6YHK3 1445 aa9.67□□□□□ -0.86
LIMA1-213ENST00000552720 RAPGEF3O95398 923 aa9.67□□□□□ -0.86
LIMA1-213ENST00000552720 USP19O94966 1318 aa9.67□□□□□ -0.86
LIMA1-213ENST00000552720 PCDHB15Q9Y5E8 787 aa9.67□□□□□ -0.86
LIMA1-213ENST00000552720 NEXMIFQ5QGS0 1516 aa9.66□□□□□ -0.86
LIMA1-213ENST00000552720 U2AF1L5P0DN76 240 aaPredicted RBP9.66□□□□□ -0.86
LIMA1-213ENST00000552720 U2AF1Q01081 240 aaKnown RBP eCLIP9.66□□□□□ -0.86
LIMA1-213ENST00000552720 NGEFQ8N5V2 710 aa9.66□□□□□ -0.86
LIMA1-213ENST00000552720 STK26Q9P289 416 aa9.66□□□□□ -0.86
LIMA1-213ENST00000552720 MLH3Q9UHC1 1453 aa9.66□□□□□ -0.86
LIMA1-213ENST00000552720 PIK3C2BO00750 1634 aa9.66□□□□□ -0.86
LIMA1-213ENST00000552720 TSR2Q969E8 191 aaKnown RBP9.65□□□□□ -0.86
LIMA1-213ENST00000552720 FRAT2O75474 233 aaPredicted RBP9.64□□□□□ -0.87
LIMA1-213ENST00000552720 NPM1P06748 294 aaKnown RBP eCLIP9.64□□□□□ -0.87
LIMA1-213ENST00000552720 CFAP74Q9C0B2 1584 aa9.64□□□□□ -0.87
LIMA1-213ENST00000552720 EVC2Q86UK5 1308 aa9.64□□□□□ -0.87
LIMA1-213ENST00000552720 ANKRD36BQ8N2N9 1353 aa9.64□□□□□ -0.87
LIMA1-213ENST00000552720 GGNBP2Q9H3C7 697 aa9.64□□□□□ -0.87
LIMA1-213ENST00000552720 NINLQ9Y2I6 1382 aa9.63□□□□□ -0.87
LIMA1-213ENST00000552720 WDR63Q8IWG1 891 aa9.63□□□□□ -0.87
LIMA1-213ENST00000552720 CFAP53Q96M91 514 aa9.63□□□□□ -0.87
LIMA1-213ENST00000552720 A0A1W2PP64 1363 aa9.63□□□□□ -0.87
LIMA1-213ENST00000552720 ADGRB2O60241 1585 aa9.63□□□□□ -0.87
LIMA1-213ENST00000552720 IDI1Q13907 227 aa9.63□□□□□ -0.87
LIMA1-213ENST00000552720 NLRP1Q9C000 1473 aa9.63□□□□□ -0.87
LIMA1-213ENST00000552720 RPGRIP1LQ68CZ1 1315 aa9.63□□□□□ -0.87
LIMA1-213ENST00000552720 DIP2CQ9Y2E4 1556 aa9.62□□□□□ -0.87
LIMA1-213ENST00000552720 U2SURPO15042 1029 aaKnown RBP9.62□□□□□ -0.87
LIMA1-213ENST00000552720 GSE1Q14687 1217 aa9.62□□□□□ -0.87
LIMA1-213ENST00000552720 PDZRN3Q9UPQ7 1066 aa9.62□□□□□ -0.87
LIMA1-213ENST00000552720 SRPK2P78362 688 aaKnown RBP9.62□□□□□ -0.87
LIMA1-213ENST00000552720 VGFO15240 615 aaPredicted RBP9.61□□□□□ -0.87
LIMA1-213ENST00000552720 MINK1Q8N4C8 1332 aaPredicted RBP9.61□□□□□ -0.87
LIMA1-213ENST00000552720 MAPK8IP3Q9UPT6 1336 aa9.61□□□□□ -0.87
LIMA1-213ENST00000552720 CCDC27Q2M243 656 aa9.61□□□□□ -0.87
LIMA1-213ENST00000552720 CNKSR2Q8WXI2 1034 aa9.61□□□□□ -0.87
LIMA1-213ENST00000552720 BRPF3Q9ULD4 1205 aa9.61□□□□□ -0.87
LIMA1-213ENST00000552720 ANKRD26Q9UPS8 1709 aa9.6□□□□□ -0.87
LIMA1-213ENST00000552720 EXOSC9Q06265 439 aaKnown RBP9.6□□□□□ -0.87
LIMA1-213ENST00000552720 PMFBP1Q8TBY8 1022 aa9.6□□□□□ -0.87
LIMA1-213ENST00000552720 RICTORQ6R327 1708 aa9.6□□□□□ -0.87
LIMA1-213ENST00000552720 FBLN1P23142 703 aa9.59□□□□□ -0.87
LIMA1-213ENST00000552720 MVPQ14764 893 aaKnown RBP9.59□□□□□ -0.87
LIMA1-213ENST00000552720 PLEKHF1Q96S99 279 aa9.59□□□□□ -0.87
LIMA1-213ENST00000552720 SLKQ9H2G2 1235 aaPredicted RBP9.59□□□□□ -0.87
LIMA1-213ENST00000552720 MYH16Q9H6N6 1097 aa9.59□□□□□ -0.87
LIMA1-213ENST00000552720 TRIM35Q9UPQ4 493 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 184.9 ms