RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 PRAM1Q96QH2 718 aa13.43□□□□□ -0.26
LIMA1-211ENST00000552338 STK26Q9P289 416 aa13.43□□□□□ -0.26
LIMA1-211ENST00000552338 XIRP1Q702N8 1843 aaKnown RBP13.43□□□□□ -0.26
LIMA1-211ENST00000552338 PLEKHH1Q9ULM0 1364 aa13.42□□□□□ -0.26
LIMA1-211ENST00000552338 TMF1P82094 1093 aa13.41□□□□□ -0.26
LIMA1-211ENST00000552338 CDCA8Q53HL2 280 aa13.41□□□□□ -0.26
LIMA1-211ENST00000552338 WAPLQ7Z5K2 1190 aa13.41□□□□□ -0.26
LIMA1-211ENST00000552338 TULP4Q9NRJ4 1543 aa13.4□□□□□ -0.26
LIMA1-211ENST00000552338 C11orf95C9JLR9 678 aaPredicted RBP13.4□□□□□ -0.26
LIMA1-211ENST00000552338 POGKQ9P215 609 aa13.4□□□□□ -0.26
LIMA1-211ENST00000552338 LTBP4Q8N2S1 1624 aa13.39□□□□□ -0.27
LIMA1-211ENST00000552338 NALCNQ8IZF0 1738 aa13.39□□□□□ -0.27
LIMA1-211ENST00000552338 CCDC7Q96M83 1385 aa13.39□□□□□ -0.27
LIMA1-211ENST00000552338 CDC42BPGQ6DT37 1551 aa13.39□□□□□ -0.27
LIMA1-211ENST00000552338 DCCP43146 1447 aa13.39□□□□□ -0.27
LIMA1-211ENST00000552338 ADGRL3Q9HAR2 1447 aa13.39□□□□□ -0.27
LIMA1-211ENST00000552338 EVC2Q86UK5 1308 aa13.39□□□□□ -0.27
LIMA1-211ENST00000552338 DISP3Q9P2K9 1392 aa13.38□□□□□ -0.27
LIMA1-211ENST00000552338 LRRC7Q96NW7 1537 aa13.38□□□□□ -0.27
LIMA1-211ENST00000552338 WASHC2AQ641Q2 1341 aa13.38□□□□□ -0.27
LIMA1-211ENST00000552338 FMN2Q9NZ56 1722 aa13.37□□□□□ -0.27
LIMA1-211ENST00000552338 HIRIP3Q9BW71 556 aaPredicted RBP13.37□□□□□ -0.27
LIMA1-211ENST00000552338 KIF7Q2M1P5 1343 aa13.37□□□□□ -0.27
LIMA1-211ENST00000552338 WASLO00401 505 aaPredicted RBP13.36□□□□□ -0.27
LIMA1-211ENST00000552338 ZNF335Q9H4Z2 1342 aaPredicted RBP13.36□□□□□ -0.27
LIMA1-211ENST00000552338 NINLQ9Y2I6 1382 aa13.35□□□□□ -0.27
LIMA1-211ENST00000552338 MYOM1P52179 1685 aa13.35□□□□□ -0.27
LIMA1-211ENST00000552338 PROSER2Q86WR7 435 aaPredicted RBP13.35□□□□□ -0.27
LIMA1-211ENST00000552338 C19orf44Q9H6X5 657 aa13.35□□□□□ -0.27
LIMA1-211ENST00000552338 ANKARQ7Z5J8 1434 aa13.35□□□□□ -0.27
LIMA1-211ENST00000552338 ATAD2Q6PL18 1390 aa13.34□□□□□ -0.27
LIMA1-211ENST00000552338 USP32Q8NFA0 1604 aa13.34□□□□□ -0.27
LIMA1-211ENST00000552338 MINK1Q8N4C8 1332 aaPredicted RBP13.34□□□□□ -0.27
LIMA1-211ENST00000552338 TOPAZ1Q8N9V7 1692 aa13.34□□□□□ -0.27
LIMA1-211ENST00000552338 TMEM94Q12767 1356 aa13.33□□□□□ -0.27
LIMA1-211ENST00000552338 CDK19Q9BWU1 502 aa13.33□□□□□ -0.28
LIMA1-211ENST00000552338 ITSN1Q15811 1721 aa13.33□□□□□ -0.28
LIMA1-211ENST00000552338 ATP7BP35670 1465 aa13.32□□□□□ -0.28
LIMA1-211ENST00000552338 IQSEC2Q5JU85 1478 aa13.32□□□□□ -0.28
LIMA1-211ENST00000552338 RGPD8O14715 1765 aaPredicted RBP13.32□□□□□ -0.28
LIMA1-211ENST00000552338 SAFB2Q14151 953 aaKnown RBP eCLIP13.31□□□□□ -0.28
LIMA1-211ENST00000552338 CCDC61Q9Y6R9 512 aa13.3□□□□□ -0.28
LIMA1-211ENST00000552338 PLEKHG3A1L390 1219 aa13.29□□□□□ -0.28
LIMA1-211ENST00000552338 AKAP12Q02952 1782 aa13.28□□□□□ -0.28
LIMA1-211ENST00000552338 CADPS2Q86UW7 1296 aa13.28□□□□□ -0.28
LIMA1-211ENST00000552338 NUDT16Q96DE0 195 aaKnown RBP13.28□□□□□ -0.28
LIMA1-211ENST00000552338 PRR36Q9H6K5 1346 aa13.28□□□□□ -0.28
LIMA1-211ENST00000552338 MSH6P52701 1360 aa13.28□□□□□ -0.28
LIMA1-211ENST00000552338 CPSF1Q10570 1443 aaKnown RBP13.28□□□□□ -0.28
LIMA1-211ENST00000552338 PER1O15534 1290 aaPredicted RBP13.27□□□□□ -0.29
LIMA1-211ENST00000552338 SRPK2P78362 688 aaKnown RBP13.27□□□□□ -0.29
LIMA1-211ENST00000552338 CABP2Q9NPB3 220 aa13.27□□□□□ -0.29
LIMA1-211ENST00000552338 MST1RQ04912 1400 aa13.27□□□□□ -0.29
LIMA1-211ENST00000552338 CD163L1Q9NR16 1453 aa13.27□□□□□ -0.29
LIMA1-211ENST00000552338 POLR3AO14802 1390 aaPredicted RBP13.26□□□□□ -0.29
LIMA1-211ENST00000552338 ANKRD36BQ8N2N9 1353 aa13.26□□□□□ -0.29
LIMA1-211ENST00000552338 MON2Q7Z3U7 1717 aa13.25□□□□□ -0.29
LIMA1-211ENST00000552338 C1orf167Q5SNV9 1468 aa13.25□□□□□ -0.29
LIMA1-211ENST00000552338 BRD4O60885 1362 aaPredicted RBP13.25□□□□□ -0.29
LIMA1-211ENST00000552338 ZNF692Q9BU19 519 aaPredicted RBP13.25□□□□□ -0.29
LIMA1-211ENST00000552338 KIF1AQ12756 1690 aa13.24□□□□□ -0.29
LIMA1-211ENST00000552338 NPC1L1Q9UHC9 1359 aa13.24□□□□□ -0.29
LIMA1-211ENST00000552338 SLC12A5Q9H2X9 1139 aa13.24□□□□□ -0.29
LIMA1-211ENST00000552338 PPIP5K1Q6PFW1 1433 aa13.23□□□□□ -0.29
LIMA1-211ENST00000552338 SCAF1Q9H7N4 1312 aaKnown RBP13.23□□□□□ -0.29
LIMA1-211ENST00000552338 RBM33Q96EV2 1170 aaKnown RBP13.23□□□□□ -0.29
LIMA1-211ENST00000552338 SSH2Q76I76 1423 aa13.22□□□□□ -0.29
LIMA1-211ENST00000552338 ATF3P18847 181 aa13.22□□□□□ -0.29
LIMA1-211ENST00000552338 DDX10Q13206 875 aaKnown RBP13.22□□□□□ -0.29
LIMA1-211ENST00000552338 CABP1Q9NZU7 370 aa13.22□□□□□ -0.29
LIMA1-211ENST00000552338 PANK3Q9H999 370 aa13.21□□□□□ -0.29
LIMA1-211ENST00000552338 TERF2IPQ9NYB0 399 aa13.21□□□□□ -0.29
LIMA1-211ENST00000552338 NRKQ7Z2Y5 1582 aa13.2□□□□□ -0.3
LIMA1-211ENST00000552338 C14orf37Q86TY3 774 aa13.2□□□□□ -0.3
LIMA1-211ENST00000552338 CARD14Q9BXL6 1004 aa13.2□□□□□ -0.3
LIMA1-211ENST00000552338 A0A1W2PP64 1363 aa13.2□□□□□ -0.3
LIMA1-211ENST00000552338 USP54Q70EL1 1684 aa13.19□□□□□ -0.3
LIMA1-211ENST00000552338 SLAIN2Q9P270 581 aa13.19□□□□□ -0.3
LIMA1-211ENST00000552338 EDC4Q6P2E9 1401 aaKnown RBP13.19□□□□□ -0.3
LIMA1-211ENST00000552338 ACEP12821 1306 aa13.18□□□□□ -0.3
LIMA1-211ENST00000552338 HDGFL2Q7Z4V5 671 aaPredicted RBP13.18□□□□□ -0.3
LIMA1-211ENST00000552338 PHF8Q9UPP1 1060 aa13.18□□□□□ -0.3
LIMA1-211ENST00000552338 USP6P35125 1406 aa13.18□□□□□ -0.3
LIMA1-211ENST00000552338 TRPM3Q9HCF6 1732 aaPredicted RBP13.17□□□□□ -0.3
LIMA1-211ENST00000552338 ANKRD26Q9UPS8 1709 aa13.17□□□□□ -0.3
LIMA1-211ENST00000552338 AMER1Q5JTC6 1135 aaPredicted RBP13.17□□□□□ -0.3
LIMA1-211ENST00000552338 TMC1Q8TDI8 760 aa13.17□□□□□ -0.3
LIMA1-211ENST00000552338 KTN1Q86UP2 1357 aaKnown RBP13.17□□□□□ -0.3
LIMA1-211ENST00000552338 NHSL1Q5SYE7 1610 aa13.17□□□□□ -0.3
LIMA1-211ENST00000552338 CERKQ8TCT0 537 aa13.16□□□□□ -0.3
LIMA1-211ENST00000552338 ORAI2Q96SN7 254 aa13.16□□□□□ -0.3
LIMA1-211ENST00000552338 NSD2O96028 1365 aa13.16□□□□□ -0.3
LIMA1-211ENST00000552338 KIF20BQ96Q89 1820 aa13.16□□□□□ -0.3
LIMA1-211ENST00000552338 TTC21AQ8NDW8 1320 aa13.15□□□□□ -0.3
LIMA1-211ENST00000552338 ESCO1Q5FWF5 840 aa13.15□□□□□ -0.3
LIMA1-211ENST00000552338 DIEXFQ68CQ4 756 aaKnown RBP13.15□□□□□ -0.3
LIMA1-211ENST00000552338 POLR3GLQ9BT43 218 aa13.15□□□□□ -0.3
LIMA1-211ENST00000552338 NSD3Q9BZ95 1437 aa13.14□□□□□ -0.31
LIMA1-211ENST00000552338 NUTM2FA1L443 756 aa13.14□□□□□ -0.31
LIMA1-211ENST00000552338 TOM1O60784 492 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms