RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 SNRPBP14678 240 aaKnown RBP8.17□□□□□ -1.1
LIMA1-206ENST00000550611 DDX11L8A8MPP1 907 aa8.16□□□□□ -1.1
LIMA1-206ENST00000550611 TRIM32Q13049 653 aa8.16□□□□□ -1.1
LIMA1-206ENST00000550611 SULF1Q8IWU6 871 aa8.16□□□□□ -1.1
LIMA1-206ENST00000550611 KIFC2Q96AC6 838 aa8.15□□□□□ -1.1
LIMA1-206ENST00000550611 SEMA3EO15041 775 aa8.14□□□□□ -1.11
LIMA1-206ENST00000550611 P3H3Q8IVL6 736 aa8.14□□□□□ -1.11
LIMA1-206ENST00000550611 REPIN1Q9BWE0 567 aaKnown RBP8.14□□□□□ -1.11
LIMA1-206ENST00000550611 J3QL48 77 aa8.13□□□□□ -1.11
LIMA1-206ENST00000550611 GNPATO15228 680 aa8.13□□□□□ -1.11
LIMA1-206ENST00000550611 MMP16P51512 607 aa8.13□□□□□ -1.11
LIMA1-206ENST00000550611 GRIPAP1Q4V328 841 aa8.13□□□□□ -1.11
LIMA1-206ENST00000550611 MRGPRX2Q96LB1 330 aa8.13□□□□□ -1.11
LIMA1-206ENST00000550611 TSHZ2Q9NRE2 1034 aa8.13□□□□□ -1.11
LIMA1-206ENST00000550611 RNF19BQ6ZMZ0 732 aa8.12□□□□□ -1.11
LIMA1-206ENST00000550611 FECHP22830 423 aa8.11□□□□□ -1.11
LIMA1-206ENST00000550611 Q3C1V9 767 aa8.11□□□□□ -1.11
LIMA1-206ENST00000550611 FAM181BA6NEQ2 426 aa8.1□□□□□ -1.11
LIMA1-206ENST00000550611 AMER1Q5JTC6 1135 aaPredicted RBP8.1□□□□□ -1.11
LIMA1-206ENST00000550611 HPS1Q92902 700 aa8.1□□□□□ -1.11
LIMA1-206ENST00000550611 GPR37O15354 613 aa8.09□□□□□ -1.11
LIMA1-206ENST00000550611 DXOO77932 396 aaKnown RBP8.08□□□□□ -1.12
LIMA1-206ENST00000550611 SLC16A10Q8TF71 515 aa8.08□□□□□ -1.12
LIMA1-206ENST00000550611 WNT7BP56706 349 aa8.07□□□□□ -1.12
LIMA1-206ENST00000550611 RBM26Q5T8P6 1007 aaKnown RBP8.07□□□□□ -1.12
LIMA1-206ENST00000550611 NLRP7Q8WX94 980 aa8.07□□□□□ -1.12
LIMA1-206ENST00000550611 PHOX2BQ99453 314 aa8.07□□□□□ -1.12
LIMA1-206ENST00000550611 TESPA1A2RU30 521 aaPredicted RBP8.06□□□□□ -1.12
LIMA1-206ENST00000550611 RC3H1Q5TC82 1133 aaKnown RBP8.06□□□□□ -1.12
LIMA1-206ENST00000550611 SMYD5Q6GMV2 418 aa8.06□□□□□ -1.12
LIMA1-206ENST00000550611 NPAS3Q8IXF0 933 aa8.06□□□□□ -1.12
LIMA1-206ENST00000550611 CCDC180Q9P1Z9 1646 aa8.06□□□□□ -1.12
LIMA1-206ENST00000550611 USB1Q9BQ65 265 aaKnown RBP8.05□□□□□ -1.12
LIMA1-206ENST00000550611 NXF1Q9UBU9 619 aaKnown RBP8.05□□□□□ -1.12
LIMA1-206ENST00000550611 SKOR1P84550 965 aa8.04□□□□□ -1.12
LIMA1-206ENST00000550611 LOC100996750A0A140TA64 210 aa8.03□□□□□ -1.12
LIMA1-206ENST00000550611 LORP23490 312 aaPredicted RBP8.03□□□□□ -1.12
LIMA1-206ENST00000550611 KRTAP4-6Q9BYQ5 205 aa8.03□□□□□ -1.12
LIMA1-206ENST00000550611 GMPRP36959 345 aa8.02□□□□□ -1.13
LIMA1-206ENST00000550611 ZSCAN1Q8NBB4 408 aa8.02□□□□□ -1.13
LIMA1-206ENST00000550611 IRF7Q92985 503 aa8.02□□□□□ -1.13
LIMA1-206ENST00000550611 CD46P15529 392 aa8.01□□□□□ -1.13
LIMA1-206ENST00000550611 KDM4AO75164 1064 aa8□□□□□ -1.13
LIMA1-206ENST00000550611 ALDH1A1P00352 501 aa8□□□□□ -1.13
LIMA1-206ENST00000550611 USP46P62068 366 aa8□□□□□ -1.13
LIMA1-206ENST00000550611 H3BM21 787 aa7.99□□□□□ -1.13
LIMA1-206ENST00000550611 CCDC24Q8N4L8 307 aa7.99□□□□□ -1.13
LIMA1-206ENST00000550611 RTN4Q9NQC3 1192 aaKnown RBP7.99□□□□□ -1.13
LIMA1-206ENST00000550611 SIAH2O43255 324 aa7.98□□□□□ -1.13
LIMA1-206ENST00000550611 TRIM46Q7Z4K8 759 aa7.98□□□□□ -1.13
LIMA1-206ENST00000550611 CAPN5O15484 640 aaPredicted RBP7.96□□□□□ -1.14
LIMA1-206ENST00000550611 BMP1P13497 986 aa7.95□□□□□ -1.14
LIMA1-206ENST00000550611 JUNDP17535 347 aa7.95□□□□□ -1.14
LIMA1-206ENST00000550611 EHBP1Q8NDI1 1231 aa7.94□□□□□ -1.14
LIMA1-206ENST00000550611 HOXA2O43364 376 aa7.93□□□□□ -1.14
LIMA1-206ENST00000550611 WASF2Q9Y6W5 498 aa7.93□□□□□ -1.14
LIMA1-206ENST00000550611 ERBB4Q15303 1308 aa7.93□□□□□ -1.14
LIMA1-206ENST00000550611 HLA-CQ95604 372 aa7.92□□□□□ -1.14
LIMA1-206ENST00000550611 VEGFBP49765 207 aa7.91□□□□□ -1.14
LIMA1-206ENST00000550611 GPIHBP1Q8IV16 184 aa7.91□□□□□ -1.14
LIMA1-206ENST00000550611 NUDT12Q9BQG2 462 aa7.91□□□□□ -1.14
LIMA1-206ENST00000550611 PTCRAQ6ISU1 281 aaPredicted RBP7.9□□□□□ -1.14
LIMA1-206ENST00000550611 RETREG3Q86VR2 466 aa7.9□□□□□ -1.14
LIMA1-206ENST00000550611 VSIG8P0DPA2 414 aa7.89□□□□□ -1.15
LIMA1-206ENST00000550611 MAP2K5Q13163 448 aa7.89□□□□□ -1.15
LIMA1-206ENST00000550611 ZFP42Q96MM3 310 aa7.89□□□□□ -1.15
LIMA1-206ENST00000550611 SH3BP2P78314 561 aa7.88□□□□□ -1.15
LIMA1-206ENST00000550611 MPNDQ8N594 471 aa7.87□□□□□ -1.15
LIMA1-206ENST00000550611 RB1CC1Q8TDY2 1594 aa7.87□□□□□ -1.15
LIMA1-206ENST00000550611 MDM2Q00987 491 aaPredicted RBP7.86□□□□□ -1.15
LIMA1-206ENST00000550611 SYMPKQ92797 1274 aaKnown RBP7.86□□□□□ -1.15
LIMA1-206ENST00000550611 IRF6O14896 467 aa7.85□□□□□ -1.15
LIMA1-206ENST00000550611 CCNYL3P0C7X3 344 aa7.85□□□□□ -1.15
LIMA1-206ENST00000550611 GUCA2AQ02747 115 aa7.85□□□□□ -1.15
LIMA1-206ENST00000550611 PLEKHG3A1L390 1219 aa7.84□□□□□ -1.15
LIMA1-206ENST00000550611 MS4A1P11836 297 aa7.84□□□□□ -1.15
LIMA1-206ENST00000550611 SUZ12Q15022 739 aaKnown RBP7.84□□□□□ -1.15
LIMA1-206ENST00000550611 MRPL14Q6P1L8 145 aaKnown RBP7.84□□□□□ -1.15
LIMA1-206ENST00000550611 SCARF1Q14162 830 aa7.83□□□□□ -1.16
LIMA1-206ENST00000550611 CECR2Q9BXF3 1484 aa7.82□□□□□ -1.16
LIMA1-206ENST00000550611 VARSP26640 1264 aaKnown RBP7.82□□□□□ -1.16
LIMA1-206ENST00000550611 KCNMA1Q12791 1236 aa7.82□□□□□ -1.16
LIMA1-206ENST00000550611 NNTQ13423 1086 aa7.82□□□□□ -1.16
LIMA1-206ENST00000550611 PTPRNQ16849 979 aa7.82□□□□□ -1.16
LIMA1-206ENST00000550611 EVA1BQ9NVM1 165 aa7.82□□□□□ -1.16
LIMA1-206ENST00000550611 TLL2Q9Y6L7 1015 aa7.82□□□□□ -1.16
LIMA1-206ENST00000550611 MINK1Q8N4C8 1332 aaPredicted RBP7.81□□□□□ -1.16
LIMA1-206ENST00000550611 NUTM1Q86Y26 1132 aa7.81□□□□□ -1.16
LIMA1-206ENST00000550611 UNC93B1Q9H1C4 597 aa7.81□□□□□ -1.16
LIMA1-206ENST00000550611 GPCPD1Q9NPB8 672 aa7.81□□□□□ -1.16
LIMA1-206ENST00000550611 FAM217BQ9NTX9 383 aaPredicted RBP7.81□□□□□ -1.16
LIMA1-206ENST00000550611 ADH1CP00326 375 aa7.8□□□□□ -1.16
LIMA1-206ENST00000550611 FDX1P10109 184 aa7.8□□□□□ -1.16
LIMA1-206ENST00000550611 TIMP2P16035 220 aa7.8□□□□□ -1.16
LIMA1-206ENST00000550611 CLCN1P35523 988 aa7.8□□□□□ -1.16
LIMA1-206ENST00000550611 KLF16Q9BXK1 252 aaPredicted RBP7.8□□□□□ -1.16
LIMA1-206ENST00000550611 GSK3AP49840 483 aa7.79□□□□□ -1.16
LIMA1-206ENST00000550611 ZNF511Q8NB15 262 aa7.79□□□□□ -1.16
LIMA1-206ENST00000550611 BAP1Q92560 729 aa7.79□□□□□ -1.16
LIMA1-206ENST00000550611 PURBQ96QR8 312 aaKnown RBP7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms