RNA–Protein interactions for RNA: ENST00000550280.1

SMARCD1-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 2

Gene SMARCD1, Length 567 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-208ENST00000550280 MYOM2P54296 1465 aa17.48■□□□□ 0.39
SMARCD1-208ENST00000550280 PXDNQ92626 1479 aa17.48■□□□□ 0.39
SMARCD1-208ENST00000550280 COL22A1Q8NFW1 1626 aaPredicted RBP17.47■□□□□ 0.39
SMARCD1-208ENST00000550280 TECPR2O15040 1411 aa17.47■□□□□ 0.39
SMARCD1-208ENST00000550280 PLEKHH1Q9ULM0 1364 aa17.46■□□□□ 0.39
SMARCD1-208ENST00000550280 NGLY1Q96IV0 654 aa17.46■□□□□ 0.39
SMARCD1-208ENST00000550280 WAPLQ7Z5K2 1190 aa17.45■□□□□ 0.38
SMARCD1-208ENST00000550280 FNBP4Q8N3X1 1017 aaPredicted RBP17.45■□□□□ 0.38
SMARCD1-208ENST00000550280 IFT172Q9UG01 1749 aa17.44■□□□□ 0.38
SMARCD1-208ENST00000550280 ATRNO75882 1429 aa17.43■□□□□ 0.38
SMARCD1-208ENST00000550280 LRPPRCP42704 1394 aaKnown RBP17.42■□□□□ 0.38
SMARCD1-208ENST00000550280 CCDC144AA2RUR9 1427 aa17.42■□□□□ 0.38
SMARCD1-208ENST00000550280 PIK3C2GO75747 1445 aa17.42■□□□□ 0.38
SMARCD1-208ENST00000550280 XPCQ01831 940 aaPredicted RBP17.42■□□□□ 0.38
SMARCD1-208ENST00000550280 RGL3Q3MIN7 710 aa17.42■□□□□ 0.38
SMARCD1-208ENST00000550280 ESCO1Q5FWF5 840 aa17.42■□□□□ 0.38
SMARCD1-208ENST00000550280 TMEM132EQ6IEE7 984 aa17.42■□□□□ 0.38
SMARCD1-208ENST00000550280 USP21Q9UK80 565 aa17.42■□□□□ 0.38
SMARCD1-208ENST00000550280 BCL9LQ86UU0 1499 aa17.42■□□□□ 0.38
SMARCD1-208ENST00000550280 STK26Q9P289 416 aa17.41■□□□□ 0.38
SMARCD1-208ENST00000550280 NPHP3Q7Z494 1330 aa17.41■□□□□ 0.38
SMARCD1-208ENST00000550280 ABCC11Q96J66 1382 aa17.4■□□□□ 0.38
SMARCD1-208ENST00000550280 NUTM2FA1L443 756 aa17.4■□□□□ 0.38
SMARCD1-208ENST00000550280 FOXO3O43524 673 aa17.4■□□□□ 0.38
SMARCD1-208ENST00000550280 MPHOSPH9Q99550 1183 aa17.4■□□□□ 0.38
SMARCD1-208ENST00000550280 ANKRD30BQ9BXX2 1392 aa17.39■□□□□ 0.37
SMARCD1-208ENST00000550280 KNDC1Q76NI1 1749 aa17.38■□□□□ 0.37
SMARCD1-208ENST00000550280 SRCAPQ6ZRS2 3230 aa17.38■□□□□ 0.37
SMARCD1-208ENST00000550280 TRPC5Q9UL62 973 aaPredicted RBP17.38■□□□□ 0.37
SMARCD1-208ENST00000550280 YTHDC2Q9H6S0 1430 aaKnown RBP17.37■□□□□ 0.37
SMARCD1-208ENST00000550280 FMN2Q9NZ56 1722 aa17.36■□□□□ 0.37
SMARCD1-208ENST00000550280 EP400Q96L91 3159 aa17.36■□□□□ 0.37
SMARCD1-208ENST00000550280 NRXN1Q9ULB1 1477 aa17.35■□□□□ 0.37
SMARCD1-208ENST00000550280 ATAD2Q6PL18 1390 aa17.34■□□□□ 0.37
SMARCD1-208ENST00000550280 MARF1Q9Y4F3 1742 aaKnown RBP17.33■□□□□ 0.37
SMARCD1-208ENST00000550280 SPATA31A3Q5VYP0 1347 aa17.33■□□□□ 0.36
SMARCD1-208ENST00000550280 SLIT2O94813 1529 aa17.32■□□□□ 0.36
SMARCD1-208ENST00000550280 C14orf93Q9H972 538 aaKnown RBP17.32■□□□□ 0.36
SMARCD1-208ENST00000550280 GLI3P10071 1580 aa17.31■□□□□ 0.36
SMARCD1-208ENST00000550280 CFAP70Q5T0N1 1121 aa17.3■□□□□ 0.36
SMARCD1-208ENST00000550280 SIRT1Q96EB6 747 aa17.3■□□□□ 0.36
SMARCD1-208ENST00000550280 GJD4Q96KN9 370 aaPredicted RBP17.3■□□□□ 0.36
SMARCD1-208ENST00000550280 KIF1AQ12756 1690 aa17.29■□□□□ 0.36
SMARCD1-208ENST00000550280 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.29■□□□□ 0.36
SMARCD1-208ENST00000550280 RALGAPBQ86X10 1494 aa17.29■□□□□ 0.36
SMARCD1-208ENST00000550280 KRT28Q7Z3Y7 464 aa17.28■□□□□ 0.36
SMARCD1-208ENST00000550280 USP32Q8NFA0 1604 aa17.28■□□□□ 0.36
SMARCD1-208ENST00000550280 RGPD8O14715 1765 aaPredicted RBP17.27■□□□□ 0.35
SMARCD1-208ENST00000550280 UNC5CLQ8IV45 518 aa17.26■□□□□ 0.35
SMARCD1-208ENST00000550280 CABLES1Q8TDN4 633 aa17.26■□□□□ 0.35
SMARCD1-208ENST00000550280 PHF8Q9UPP1 1060 aa17.26■□□□□ 0.35
SMARCD1-208ENST00000550280 TNS3Q68CZ2 1445 aa17.26■□□□□ 0.35
SMARCD1-208ENST00000550280 ADGRB1O14514 1584 aa17.25■□□□□ 0.35
SMARCD1-208ENST00000550280 PRAM1Q96QH2 718 aa17.25■□□□□ 0.35
SMARCD1-208ENST00000550280 SAFB2Q14151 953 aaKnown RBP eCLIP17.24■□□□□ 0.35
SMARCD1-208ENST00000550280 DLC1Q96QB1 1528 aa17.23■□□□□ 0.35
SMARCD1-208ENST00000550280 ABCA3Q99758 1704 aa17.23■□□□□ 0.35
SMARCD1-208ENST00000550280 DHX57Q6P158 1386 aaKnown RBP17.23■□□□□ 0.35
SMARCD1-208ENST00000550280 SBNO1A3KN83 1393 aa17.22■□□□□ 0.35
SMARCD1-208ENST00000550280 ADGRB2O60241 1585 aa17.21■□□□□ 0.35
SMARCD1-208ENST00000550280 RAB3GAP2Q9H2M9 1393 aa17.21■□□□□ 0.35
SMARCD1-208ENST00000550280 PRR36Q9H6K5 1346 aa17.2■□□□□ 0.34
SMARCD1-208ENST00000550280 PLCH1Q4KWH8 1693 aa17.2■□□□□ 0.34
SMARCD1-208ENST00000550280 BRWD3Q6RI45 1802 aa17.19■□□□□ 0.34
SMARCD1-208ENST00000550280 PLEKHG5O94827 1062 aa17.19■□□□□ 0.34
SMARCD1-208ENST00000550280 PMFBP1Q8TBY8 1022 aa17.19■□□□□ 0.34
SMARCD1-208ENST00000550280 ANKARQ7Z5J8 1434 aa17.19■□□□□ 0.34
SMARCD1-208ENST00000550280 TRPM3Q9HCF6 1732 aaPredicted RBP17.18■□□□□ 0.34
SMARCD1-208ENST00000550280 VPS72Q15906 364 aa17.18■□□□□ 0.34
SMARCD1-208ENST00000550280 CCDC125Q86Z20 511 aa17.18■□□□□ 0.34
SMARCD1-208ENST00000550280 FAM83GA6ND36 823 aa17.17■□□□□ 0.34
SMARCD1-208ENST00000550280 ONECUT3O60422 494 aaPredicted RBP17.17■□□□□ 0.34
SMARCD1-208ENST00000550280 BLMP54132 1417 aaPredicted RBP17.17■□□□□ 0.34
SMARCD1-208ENST00000550280 PSME1Q06323 249 aa17.17■□□□□ 0.34
SMARCD1-208ENST00000550280 SEPT12Q8IYM1 358 aa17.17■□□□□ 0.34
SMARCD1-208ENST00000550280 DEFB132Q7Z7B7 95 aa17.16■□□□□ 0.34
SMARCD1-208ENST00000550280 HIRIP3Q9BW71 556 aaPredicted RBP17.16■□□□□ 0.34
SMARCD1-208ENST00000550280 ZRANB1Q9UGI0 708 aa17.16■□□□□ 0.34
SMARCD1-208ENST00000550280 NWD2Q9ULI1 1742 aa17.16■□□□□ 0.34
SMARCD1-208ENST00000550280 ARHGEF10O15013 1369 aa17.15■□□□□ 0.34
SMARCD1-208ENST00000550280 TRAK1Q9UPV9 953 aa17.15■□□□□ 0.34
SMARCD1-208ENST00000550280 ALS2Q96Q42 1657 aa17.14■□□□□ 0.33
SMARCD1-208ENST00000550280 NRAPQ86VF7 1730 aa17.14■□□□□ 0.33
SMARCD1-208ENST00000550280 LMOD2Q6P5Q4 547 aa17.14■□□□□ 0.33
SMARCD1-208ENST00000550280 POGKQ9P215 609 aa17.14■□□□□ 0.33
SMARCD1-208ENST00000550280 TULP4Q9NRJ4 1543 aa17.13■□□□□ 0.33
SMARCD1-208ENST00000550280 MINK1Q8N4C8 1332 aaPredicted RBP17.13■□□□□ 0.33
SMARCD1-208ENST00000550280 HAP1P54257 671 aaPredicted RBP17.12■□□□□ 0.33
SMARCD1-208ENST00000550280 ACIN1Q9UKV3 1341 aaKnown RBP17.12■□□□□ 0.33
SMARCD1-208ENST00000550280 CRYBG1Q9Y4K1 1723 aa17.11■□□□□ 0.33
SMARCD1-208ENST00000550280 KDM2AQ9Y2K7 1162 aa17.11■□□□□ 0.33
SMARCD1-208ENST00000550280 WASLO00401 505 aaPredicted RBP17.1■□□□□ 0.33
SMARCD1-208ENST00000550280 DCAF11Q8TEB1 546 aa17.1■□□□□ 0.33
SMARCD1-208ENST00000550280 KRT27Q7Z3Y8 459 aa17.09■□□□□ 0.33
SMARCD1-208ENST00000550280 ATP7BP35670 1465 aa17.08■□□□□ 0.32
SMARCD1-208ENST00000550280 BTG4Q9NY30 223 aa17.08■□□□□ 0.32
SMARCD1-208ENST00000550280 CCDC9Q9Y3X0 531 aaKnown RBP17.08■□□□□ 0.32
SMARCD1-208ENST00000550280 FAM98CQ17RN3 349 aaKnown RBP17.07■□□□□ 0.32
SMARCD1-208ENST00000550280 COL14A1Q05707 1796 aaKnown RBP17.06■□□□□ 0.32
SMARCD1-208ENST00000550280 ARHGEF28Q8N1W1 1705 aaKnown RBP17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms