RNA–Protein interactions for RNA: ENST00000550075.5

CPSF6-205, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 4

Gene CPSF6, Length 540 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-205ENST00000550075 PRAM1Q96QH2 718 aa37.29■■■■□ 3.56
CPSF6-205ENST00000550075 POGKQ9P215 609 aa37.29■■■■□ 3.56
CPSF6-205ENST00000550075 TRAK1Q9UPV9 953 aa37.29■■■■□ 3.56
CPSF6-205ENST00000550075 PHLPP1O60346 1717 aa37.29■■■■□ 3.56
CPSF6-205ENST00000550075 C1orf167Q5SNV9 1468 aa37.26■■■■□ 3.56
CPSF6-205ENST00000550075 AHDC1Q5TGY3 1603 aaPredicted RBP37.26■■■■□ 3.56
CPSF6-205ENST00000550075 ARHGEF28Q8N1W1 1705 aaKnown RBP37.26■■■■□ 3.56
CPSF6-205ENST00000550075 BRINP3Q76B58 766 aa37.25■■■■□ 3.55
CPSF6-205ENST00000550075 TRPM1Q7Z4N2 1603 aa37.23■■■■□ 3.55
CPSF6-205ENST00000550075 FMN2Q9NZ56 1722 aa37.22■■■■□ 3.55
CPSF6-205ENST00000550075 CLSPNQ9HAW4 1339 aa37.21■■■■□ 3.55
CPSF6-205ENST00000550075 ADGRB2O60241 1585 aa37.21■■■■□ 3.55
CPSF6-205ENST00000550075 SAFB2Q14151 953 aaKnown RBP eCLIP37.2■■■■□ 3.55
CPSF6-205ENST00000550075 NHSL1Q5SYE7 1610 aa37.19■■■■□ 3.54
CPSF6-205ENST00000550075 COL16A1Q07092 1604 aaPredicted RBP37.18■■■■□ 3.54
CPSF6-205ENST00000550075 NBPF1Q3BBV0 1214 aa37.16■■■■□ 3.54
CPSF6-205ENST00000550075 ROCK2O75116 1388 aaKnown RBP37.12■■■■□ 3.53
CPSF6-205ENST00000550075 EIF3AQ14152 1382 aaKnown RBP37.1■■■■□ 3.53
CPSF6-205ENST00000550075 ORAI2Q96SN7 254 aa37.08■■■■□ 3.53
CPSF6-205ENST00000550075 MINK1Q8N4C8 1332 aaPredicted RBP37.08■■■■□ 3.53
CPSF6-205ENST00000550075 JCADQ9P266 1359 aa37.07■■■■□ 3.53
CPSF6-205ENST00000550075 KIF1AQ12756 1690 aa37.06■■■■□ 3.52
CPSF6-205ENST00000550075 NUTM2FA1L443 756 aa37.06■■■■□ 3.52
CPSF6-205ENST00000550075 MED1Q15648 1581 aaPredicted RBP37.06■■■■□ 3.52
CPSF6-205ENST00000550075 ESCO1Q5FWF5 840 aa37.06■■■■□ 3.52
CPSF6-205ENST00000550075 ANKARQ7Z5J8 1434 aa37.05■■■■□ 3.52
CPSF6-205ENST00000550075 RALGAPBQ86X10 1494 aa37.03■■■■□ 3.52
CPSF6-205ENST00000550075 NBPF8Q3BBV2 869 aa37.03■■■■□ 3.52
CPSF6-205ENST00000550075 CCER1Q8TC90 406 aaPredicted RBP37.03■■■■□ 3.52
CPSF6-205ENST00000550075 HIRIP3Q9BW71 556 aaPredicted RBP37.03■■■■□ 3.52
CPSF6-205ENST00000550075 GPRASP1Q5JY77 1395 aa37.02■■■■□ 3.52
CPSF6-205ENST00000550075 SHPRHQ149N8 1683 aa37.01■■■■□ 3.52
CPSF6-205ENST00000550075 CENPJQ9HC77 1338 aaPredicted RBP37.01■■■■□ 3.52
CPSF6-205ENST00000550075 TULP4Q9NRJ4 1543 aa37■■■■□ 3.51
CPSF6-205ENST00000550075 NPHP3Q7Z494 1330 aa37■■■■□ 3.51
CPSF6-205ENST00000550075 QRICH2Q9H0J4 1663 aa36.99■■■■□ 3.51
CPSF6-205ENST00000550075 WASLO00401 505 aaPredicted RBP36.98■■■■□ 3.51
CPSF6-205ENST00000550075 DISP3Q9P2K9 1392 aa36.98■■■■□ 3.51
CPSF6-205ENST00000550075 RGPD8O14715 1765 aaPredicted RBP36.98■■■■□ 3.51
CPSF6-205ENST00000550075 TIMELESSQ9UNS1 1208 aa36.97■■■■□ 3.51
CPSF6-205ENST00000550075 USP32Q8NFA0 1604 aa36.96■■■■□ 3.51
CPSF6-205ENST00000550075 DDX17Q92841 729 aaKnown RBP36.95■■■■□ 3.51
CPSF6-205ENST00000550075 LRRC59Q96AG4 307 aaKnown RBP36.95■■■■□ 3.51
CPSF6-205ENST00000550075 SOS2Q07890 1332 aaPredicted RBP36.92■■■■□ 3.5
CPSF6-205ENST00000550075 ITSN1Q15811 1721 aa36.92■■■■□ 3.5
CPSF6-205ENST00000550075 CARD11Q9BXL7 1154 aa36.91■■■■□ 3.5
CPSF6-205ENST00000550075 SPATA31A6Q5VVP1 1343 aa36.9■■■■□ 3.5
CPSF6-205ENST00000550075 PHF8Q9UPP1 1060 aa36.9■■■■□ 3.5
CPSF6-205ENST00000550075 PXDNQ92626 1479 aa36.88■■■■□ 3.5
CPSF6-205ENST00000550075 FOXO3O43524 673 aa36.88■■■■□ 3.49
CPSF6-205ENST00000550075 ATP7BP35670 1465 aa36.86■■■■□ 3.49
CPSF6-205ENST00000550075 PHF23Q9BUL5 403 aaPredicted RBP36.84■■■■□ 3.49
CPSF6-205ENST00000550075 CDK19Q9BWU1 502 aa36.84■■■■□ 3.49
CPSF6-205ENST00000550075 PRR36Q9H6K5 1346 aa36.84■■■■□ 3.49
CPSF6-205ENST00000550075 PNPLA6Q8IY17 1366 aa36.83■■■■□ 3.49
CPSF6-205ENST00000550075 NUDT16Q96DE0 195 aaKnown RBP36.79■■■■□ 3.48
CPSF6-205ENST00000550075 TOPAZ1Q8N9V7 1692 aa36.79■■■■□ 3.48
CPSF6-205ENST00000550075 XPCQ01831 940 aaPredicted RBP36.78■■■■□ 3.48
CPSF6-205ENST00000550075 SRPK2P78362 688 aaKnown RBP36.77■■■■□ 3.48
CPSF6-205ENST00000550075 PSME1Q06323 249 aa36.77■■■■□ 3.48
CPSF6-205ENST00000550075 PMFBP1Q8TBY8 1022 aa36.77■■■■□ 3.48
CPSF6-205ENST00000550075 KRT28Q7Z3Y7 464 aa36.76■■■■□ 3.48
CPSF6-205ENST00000550075 EVC2Q86UK5 1308 aa36.76■■■■□ 3.47
CPSF6-205ENST00000550075 SBNO2Q9Y2G9 1366 aa36.76■■■■□ 3.47
CPSF6-205ENST00000550075 COL22A1Q8NFW1 1626 aaPredicted RBP36.75■■■■□ 3.47
CPSF6-205ENST00000550075 LRP6O75581 1613 aa36.74■■■■□ 3.47
CPSF6-205ENST00000550075 MEX3CQ5U5Q3 659 aaKnown RBP36.72■■■■□ 3.47
CPSF6-205ENST00000550075 CCDC61Q9Y6R9 512 aa36.72■■■■□ 3.47
CPSF6-205ENST00000550075 NGDNQ8NEJ9 315 aaKnown RBP36.71■■■■□ 3.47
CPSF6-205ENST00000550075 TNS3Q68CZ2 1445 aa36.7■■■■□ 3.47
CPSF6-205ENST00000550075 SBNO1A3KN83 1393 aa36.7■■■■□ 3.47
CPSF6-205ENST00000550075 NUTM2BA6NNL0 878 aaPredicted RBP36.7■■■■□ 3.47
CPSF6-205ENST00000550075 NUTM2EB1AL46 878 aaPredicted RBP36.7■■■■□ 3.47
CPSF6-205ENST00000550075 NUTM2AQ8IVF1 878 aaPredicted RBP36.7■■■■□ 3.47
CPSF6-205ENST00000550075 SPATA31A3Q5VYP0 1347 aa36.69■■■■□ 3.46
CPSF6-205ENST00000550075 CABP2Q9NPB3 220 aa36.67■■■■□ 3.46
CPSF6-205ENST00000550075 TRPM3Q9HCF6 1732 aaPredicted RBP36.65■■■■□ 3.46
CPSF6-205ENST00000550075 PPIP5K1Q6PFW1 1433 aa36.64■■■■□ 3.46
CPSF6-205ENST00000550075 ARHGEF10O15013 1369 aa36.64■■■■□ 3.46
CPSF6-205ENST00000550075 POLR3AO14802 1390 aaPredicted RBP36.62■■■■□ 3.45
CPSF6-205ENST00000550075 PLEKHG3A1L390 1219 aa36.61■■■■□ 3.45
CPSF6-205ENST00000550075 ATAD2Q6PL18 1390 aa36.6■■■■□ 3.45
CPSF6-205ENST00000550075 USP47Q96K76 1375 aa36.6■■■■□ 3.45
CPSF6-205ENST00000550075 SLC24A1O60721 1099 aa36.59■■■■□ 3.45
CPSF6-205ENST00000550075 ACEP12821 1306 aa36.58■■■■□ 3.45
CPSF6-205ENST00000550075 LMOD2Q6P5Q4 547 aa36.57■■■■□ 3.44
CPSF6-205ENST00000550075 ALS2Q96Q42 1657 aa36.57■■■■□ 3.44
CPSF6-205ENST00000550075 ST20-MTHFSA0A0A6YYL1 179 aa36.54■■■■□ 3.44
CPSF6-205ENST00000550075 PAK3O75914 559 aaPredicted RBP36.51■■■■□ 3.44
CPSF6-205ENST00000550075 ADAMTS2O95450 1211 aa36.51■■■■□ 3.44
CPSF6-205ENST00000550075 MARF1Q9Y4F3 1742 aaKnown RBP36.51■■■■□ 3.43
CPSF6-205ENST00000550075 CABP1Q9NZU7 370 aa36.5■■■■□ 3.43
CPSF6-205ENST00000550075 BRD4O60885 1362 aaPredicted RBP36.5■■■■□ 3.43
CPSF6-205ENST00000550075 ABCA3Q99758 1704 aa36.49■■■■□ 3.43
CPSF6-205ENST00000550075 HAP1P54257 671 aaPredicted RBP36.49■■■■□ 3.43
CPSF6-205ENST00000550075 C8orf37Q96NL8 207 aa36.49■■■■□ 3.43
CPSF6-205ENST00000550075 RGS17Q9UGC6 210 aaPredicted RBP36.49■■■■□ 3.43
CPSF6-205ENST00000550075 ZNF772Q68DY9 489 aaPredicted RBP36.48■■■■□ 3.43
CPSF6-205ENST00000550075 TESK2Q96S53 571 aa36.47■■■■□ 3.43
CPSF6-205ENST00000550075 PUS7Q96PZ0 661 aaKnown RBP36.45■■■■□ 3.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms