RNA–Protein interactions for RNA: ENST00000547637.1

SMARCD1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, human

TSL 2

Gene SMARCD1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCD1-204	ENST00000547637	ADAMTS2	O95450	1211 aa		34.31	■■■■□ 3.08
SMARCD1-204	ENST00000547637	ADGRF5	Q8IZF2	1346 aa		34.3	■■■■□ 3.08
SMARCD1-204	ENST00000547637	ESCO1	Q5FWF5	840 aa		34.3	■■■■□ 3.08
SMARCD1-204	ENST00000547637	NPHP3	Q7Z494	1330 aa		34.29	■■■■□ 3.08
SMARCD1-204	ENST00000547637	STK26	Q9P289	416 aa		34.28	■■■■□ 3.08
SMARCD1-204	ENST00000547637	LAMC1	P11047	1609 aa		34.28	■■■■□ 3.08
SMARCD1-204	ENST00000547637	LRPPRC	P42704	1394 aa	Known RBP	34.24	■■■■□ 3.07
SMARCD1-204	ENST00000547637	SPATA31E1	Q6ZUB1	1445 aa		34.22	■■■■□ 3.07
SMARCD1-204	ENST00000547637	CDC42BPG	Q6DT37	1551 aa		34.21	■■■■□ 3.07
SMARCD1-204	ENST00000547637	USP21	Q9UK80	565 aa		34.21	■■■■□ 3.07
SMARCD1-204	ENST00000547637	ABCC11	Q96J66	1382 aa		34.21	■■■■□ 3.07
SMARCD1-204	ENST00000547637	WAPL	Q7Z5K2	1190 aa		34.2	■■■■□ 3.07
SMARCD1-204	ENST00000547637	TRPC5	Q9UL62	973 aa	Predicted RBP	34.18	■■■■□ 3.06
SMARCD1-204	ENST00000547637	TECPR2	O15040	1411 aa		34.18	■■■■□ 3.06
SMARCD1-204	ENST00000547637	FOXO3	O43524	673 aa		34.17	■■■■□ 3.06
SMARCD1-204	ENST00000547637	TMEM132E	Q6IEE7	984 aa		34.17	■■■■□ 3.06
SMARCD1-204	ENST00000547637	NUTM2F	A1L443	756 aa		34.13	■■■■□ 3.05
SMARCD1-204	ENST00000547637	FNBP4	Q8N3X1	1017 aa	Predicted RBP	34.13	■■■■□ 3.05
SMARCD1-204	ENST00000547637	IFT172	Q9UG01	1749 aa		34.13	■■■■□ 3.05
SMARCD1-204	ENST00000547637	PIK3C2G	O75747	1445 aa		34.13	■■■■□ 3.05
SMARCD1-204	ENST00000547637	SIRT1	Q96EB6	747 aa		34.12	■■■■□ 3.05
SMARCD1-204	ENST00000547637	RGS12	O14924	1447 aa		34.11	■■■■□ 3.05
SMARCD1-204	ENST00000547637	YTHDC2	Q9H6S0	1430 aa	Known RBP	34.1	■■■■□ 3.05
SMARCD1-204	ENST00000547637	COL22A1	Q8NFW1	1626 aa	Predicted RBP	34.09	■■■■□ 3.05
SMARCD1-204	ENST00000547637	C14orf93	Q9H972	538 aa	Known RBP	34.09	■■■■□ 3.05
SMARCD1-204	ENST00000547637	DHX57	Q6P158	1386 aa	Known RBP	34.09	■■■■□ 3.05
SMARCD1-204	ENST00000547637	XPC	Q01831	940 aa	Predicted RBP	34.08	■■■■□ 3.05
SMARCD1-204	ENST00000547637	KNDC1	Q76NI1	1749 aa		34.07	■■■■□ 3.05
SMARCD1-204	ENST00000547637	PXDN	Q92626	1479 aa		34.05	■■■■□ 3.04
SMARCD1-204	ENST00000547637	PLEKHH1	Q9ULM0	1364 aa		34.04	■■■■□ 3.04
SMARCD1-204	ENST00000547637	ATAD2	Q6PL18	1390 aa		34.03	■■■■□ 3.04
SMARCD1-204	ENST00000547637	MYOM2	P54296	1465 aa		34.02	■■■■□ 3.04
SMARCD1-204	ENST00000547637	PSME1	Q06323	249 aa		34.01	■■■■□ 3.03
SMARCD1-204	ENST00000547637	CFAP70	Q5T0N1	1121 aa		33.99	■■■■□ 3.03
SMARCD1-204	ENST00000547637	KRT28	Q7Z3Y7	464 aa		33.99	■■■■□ 3.03
SMARCD1-204	ENST00000547637	ATRN	O75882	1429 aa		33.98	■■■■□ 3.03
SMARCD1-204	ENST00000547637	KIF1A	Q12756	1690 aa		33.97	■■■■□ 3.03
SMARCD1-204	ENST00000547637	FMN2	Q9NZ56	1722 aa		33.97	■■■■□ 3.03
SMARCD1-204	ENST00000547637	SPATA31A3	Q5VYP0	1347 aa		33.97	■■■■□ 3.03
SMARCD1-204	ENST00000547637	HAP1	P54257	671 aa	Predicted RBP	33.96	■■■■□ 3.03
SMARCD1-204	ENST00000547637	POGK	Q9P215	609 aa		33.96	■■■■□ 3.03
SMARCD1-204	ENST00000547637	PHF8	Q9UPP1	1060 aa		33.96	■■■■□ 3.03
SMARCD1-204	ENST00000547637	NRXN1	Q9ULB1	1477 aa		33.94	■■■■□ 3.02
SMARCD1-204	ENST00000547637	MARF1	Q9Y4F3	1742 aa	Known RBP	33.93	■■■■□ 3.02
SMARCD1-204	ENST00000547637	PRAM1	Q96QH2	718 aa		33.93	■■■■□ 3.02
SMARCD1-204	ENST00000547637	GJD4	Q96KN9	370 aa	Predicted RBP	33.92	■■■■□ 3.02
SMARCD1-204	ENST00000547637	RAB3GAP2	Q9H2M9	1393 aa		33.92	■■■■□ 3.02
SMARCD1-204	ENST00000547637	BCL9L	Q86UU0	1499 aa		33.91	■■■■□ 3.02
SMARCD1-204	ENST00000547637	SAFB2	Q14151	953 aa	Known RBP eCLIP	33.91	■■■■□ 3.02
SMARCD1-204	ENST00000547637	UNC5CL	Q8IV45	518 aa		33.89	■■■■□ 3.02
SMARCD1-204	ENST00000547637	CCDC125	Q86Z20	511 aa		33.88	■■■■□ 3.01
SMARCD1-204	ENST00000547637	STAC3	Q96MF2	364 aa		33.87	■■■■□ 3.01
SMARCD1-204	ENST00000547637	LMOD2	Q6P5Q4	547 aa		33.85	■■■■□ 3.01
SMARCD1-204	ENST00000547637	TNS3	Q68CZ2	1445 aa		33.83	■■■■□ 3.01
SMARCD1-204	ENST00000547637	KDM2A	Q9Y2K7	1162 aa		33.82	■■■■□ 3
SMARCD1-204	ENST00000547637	DLC1	Q96QB1	1528 aa		33.82	■■■■□ 3
SMARCD1-204	ENST00000547637	RGPD8	O14715	1765 aa	Predicted RBP	33.82	■■■■□ 3
SMARCD1-204	ENST00000547637	SBNO1	A3KN83	1393 aa		33.82	■■■■□ 3
SMARCD1-204	ENST00000547637	ARHGEF10	O15013	1369 aa		33.82	■■■■□ 3
SMARCD1-204	ENST00000547637	DCAF11	Q8TEB1	546 aa		33.81	■■■■□ 3
SMARCD1-204	ENST00000547637	TRAK1	Q9UPV9	953 aa		33.8	■■■■□ 3
SMARCD1-204	ENST00000547637	EIF3A	Q14152	1382 aa	Known RBP	33.79	■■■■□ 3
SMARCD1-204	ENST00000547637	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	33.79	■■■■□ 3
SMARCD1-204	ENST00000547637	ANKAR	Q7Z5J8	1434 aa		33.79	■■■■□ 3
SMARCD1-204	ENST00000547637	SLIT2	O94813	1529 aa		33.78	■■■■□ 3
SMARCD1-204	ENST00000547637	PMFBP1	Q8TBY8	1022 aa		33.77	■■■■□ 3
SMARCD1-204	ENST00000547637	PLEKHG5	O94827	1062 aa		33.76	■■■□□ 2.99
SMARCD1-204	ENST00000547637	HRC	P23327	699 aa		33.76	■■■□□ 2.99
SMARCD1-204	ENST00000547637	USP32	Q8NFA0	1604 aa		33.75	■■■□□ 2.99
SMARCD1-204	ENST00000547637	CABLES1	Q8TDN4	633 aa		33.75	■■■□□ 2.99
SMARCD1-204	ENST00000547637	ZRANB1	Q9UGI0	708 aa		33.74	■■■□□ 2.99
SMARCD1-204	ENST00000547637	GPRASP1	Q5JY77	1395 aa		33.73	■■■□□ 2.99
SMARCD1-204	ENST00000547637	CCDC9	Q9Y3X0	531 aa	Known RBP	33.73	■■■□□ 2.99
SMARCD1-204	ENST00000547637	RALGAPB	Q86X10	1494 aa		33.72	■■■□□ 2.99
SMARCD1-204	ENST00000547637	HIRIP3	Q9BW71	556 aa	Predicted RBP	33.72	■■■□□ 2.99
SMARCD1-204	ENST00000547637	VPS72	Q15906	364 aa		33.71	■■■□□ 2.99
SMARCD1-204	ENST00000547637	MINK1	Q8N4C8	1332 aa	Predicted RBP	33.71	■■■□□ 2.99
SMARCD1-204	ENST00000547637	ADGRB1	O14514	1584 aa		33.68	■■■□□ 2.98
SMARCD1-204	ENST00000547637	ADGRB2	O60241	1585 aa		33.68	■■■□□ 2.98
SMARCD1-204	ENST00000547637	WASL	O00401	505 aa	Predicted RBP	33.67	■■■□□ 2.98
SMARCD1-204	ENST00000547637	SF3B2	Q13435	895 aa	Known RBP	33.66	■■■□□ 2.98
SMARCD1-204	ENST00000547637	SEPT12	Q8IYM1	358 aa		33.65	■■■□□ 2.98
SMARCD1-204	ENST00000547637	NGDN	Q8NEJ9	315 aa	Known RBP	33.65	■■■□□ 2.98
SMARCD1-204	ENST00000547637	GLI3	P10071	1580 aa		33.64	■■■□□ 2.98
SMARCD1-204	ENST00000547637	NWD2	Q9ULI1	1742 aa		33.62	■■■□□ 2.97
SMARCD1-204	ENST00000547637	FAM83G	A6ND36	823 aa		33.62	■■■□□ 2.97
SMARCD1-204	ENST00000547637	BLM	P54132	1417 aa	Predicted RBP	33.61	■■■□□ 2.97
SMARCD1-204	ENST00000547637	TULP4	Q9NRJ4	1543 aa		33.59	■■■□□ 2.97
SMARCD1-204	ENST00000547637	ONECUT3	O60422	494 aa	Predicted RBP	33.59	■■■□□ 2.97
SMARCD1-204	ENST00000547637	PAK3	O75914	559 aa	Predicted RBP	33.59	■■■□□ 2.97
SMARCD1-204	ENST00000547637		A0A0G2JS52	829 aa		33.58	■■■□□ 2.97
SMARCD1-204	ENST00000547637	MYT1	Q01538	1121 aa		33.58	■■■□□ 2.97
SMARCD1-204	ENST00000547637	PLCH1	Q4KWH8	1693 aa		33.58	■■■□□ 2.97
SMARCD1-204	ENST00000547637	KRT27	Q7Z3Y8	459 aa		33.56	■■■□□ 2.96
SMARCD1-204	ENST00000547637	PRR36	Q9H6K5	1346 aa		33.55	■■■□□ 2.96
SMARCD1-204	ENST00000547637	BTG4	Q9NY30	223 aa		33.55	■■■□□ 2.96
SMARCD1-204	ENST00000547637	ABCA3	Q99758	1704 aa		33.54	■■■□□ 2.96
SMARCD1-204	ENST00000547637	BRWD3	Q6RI45	1802 aa		33.51	■■■□□ 2.96
SMARCD1-204	ENST00000547637	TRPM3	Q9HCF6	1732 aa	Predicted RBP	33.51	■■■□□ 2.96
SMARCD1-204	ENST00000547637	NUDT16	Q96DE0	195 aa	Known RBP	33.51	■■■□□ 2.95

Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms