RNA–Protein interactions for RNA: ENST00000547310.1

LGR5-204, Transcript of leucine rich repeat containing G protein-coupled receptor 5, human

TSL 3

Gene LGR5, Length 576 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LGR5-204	ENST00000547310		J3QL48	77 aa		10.86	□□□□□ -0.67
LGR5-204	ENST00000547310	MLLT3	P42568	568 aa	Predicted RBP	10.86	□□□□□ -0.67
LGR5-204	ENST00000547310	KCNMA1	Q12791	1236 aa		10.86	□□□□□ -0.67
LGR5-204	ENST00000547310	FAM160A2	Q8N612	972 aa	Predicted RBP	10.85	□□□□□ -0.67
LGR5-204	ENST00000547310	HPS1	Q92902	700 aa		10.85	□□□□□ -0.67
LGR5-204	ENST00000547310	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	10.84	□□□□□ -0.67
LGR5-204	ENST00000547310		H3BM21	787 aa		10.84	□□□□□ -0.67
LGR5-204	ENST00000547310	PTGDR	Q13258	359 aa		10.84	□□□□□ -0.67
LGR5-204	ENST00000547310	RSPH4A	Q5TD94	716 aa		10.84	□□□□□ -0.67
LGR5-204	ENST00000547310	MRGPRX2	Q96LB1	330 aa		10.83	□□□□□ -0.68
LGR5-204	ENST00000547310	SALL2	Q9Y467	1007 aa	Predicted RBP	10.83	□□□□□ -0.68
LGR5-204	ENST00000547310	TULP1	O00294	542 aa	Predicted RBP	10.81	□□□□□ -0.68
LGR5-204	ENST00000547310	MORN1	Q5T089	497 aa		10.81	□□□□□ -0.68
LGR5-204	ENST00000547310	FMNL1	O95466	1100 aa	Predicted RBP	10.8	□□□□□ -0.68
LGR5-204	ENST00000547310	GSK3A	P49840	483 aa		10.8	□□□□□ -0.68
LGR5-204	ENST00000547310	KCTD17	Q8N5Z5	321 aa		10.8	□□□□□ -0.68
LGR5-204	ENST00000547310	REPIN1	Q9BWE0	567 aa	Known RBP	10.8	□□□□□ -0.68
LGR5-204	ENST00000547310	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	10.79	□□□□□ -0.68
LGR5-204	ENST00000547310	ERBB4	Q15303	1308 aa		10.79	□□□□□ -0.68
LGR5-204	ENST00000547310	TRIM32	Q13049	653 aa		10.78	□□□□□ -0.68
LGR5-204	ENST00000547310	MSS51	Q4VC12	460 aa		10.75	□□□□□ -0.69
LGR5-204	ENST00000547310	ATP6V1A	P38606	617 aa		10.74	□□□□□ -0.69
LGR5-204	ENST00000547310	BRICD5	Q6PL45	260 aa		10.74	□□□□□ -0.69
LGR5-204	ENST00000547310	FAM161A	Q3B820	660 aa		10.73	□□□□□ -0.69
LGR5-204	ENST00000547310	VEGFB	P49765	207 aa		10.72	□□□□□ -0.69
LGR5-204	ENST00000547310	RBM26	Q5T8P6	1007 aa	Known RBP	10.72	□□□□□ -0.69
LGR5-204	ENST00000547310	PRDM9	Q9NQV7	894 aa		10.72	□□□□□ -0.69
LGR5-204	ENST00000547310	SLC27A5	Q9Y2P5	690 aa		10.72	□□□□□ -0.69
LGR5-204	ENST00000547310	OAT	P04181	439 aa		10.71	□□□□□ -0.69
LGR5-204	ENST00000547310	PXYLP1	Q8TE99	480 aa		10.71	□□□□□ -0.69
LGR5-204	ENST00000547310	TRIM46	Q7Z4K8	759 aa		10.7	□□□□□ -0.7
LGR5-204	ENST00000547310	TMEM151A	Q8N4L1	468 aa		10.7	□□□□□ -0.7
LGR5-204	ENST00000547310	FUT2	Q10981	343 aa		10.69	□□□□□ -0.7
LGR5-204	ENST00000547310	VSIG8	P0DPA2	414 aa		10.68	□□□□□ -0.7
LGR5-204	ENST00000547310	MMP16	P51512	607 aa		10.67	□□□□□ -0.7
LGR5-204	ENST00000547310	RC3H1	Q5TC82	1133 aa	Known RBP	10.67	□□□□□ -0.7
LGR5-204	ENST00000547310	FECH	P22830	423 aa		10.66	□□□□□ -0.7
LGR5-204	ENST00000547310	GPR37	O15354	613 aa		10.65	□□□□□ -0.7
LGR5-204	ENST00000547310	GDF11	O95390	407 aa		10.65	□□□□□ -0.7
LGR5-204	ENST00000547310	WNT7B	P56706	349 aa		10.65	□□□□□ -0.7
LGR5-204	ENST00000547310	GPIHBP1	Q8IV16	184 aa		10.65	□□□□□ -0.7
LGR5-204	ENST00000547310	NUTM2F	A1L443	756 aa		10.63	□□□□□ -0.71
LGR5-204	ENST00000547310	RASSF7	Q02833	373 aa		10.63	□□□□□ -0.71
LGR5-204	ENST00000547310	CAPN5	O15484	640 aa	Predicted RBP	10.62	□□□□□ -0.71
LGR5-204	ENST00000547310	FCHSD2	O94868	740 aa		10.62	□□□□□ -0.71
LGR5-204	ENST00000547310	BMP1	P13497	986 aa		10.62	□□□□□ -0.71
LGR5-204	ENST00000547310	ALDH1A1	P00352	501 aa		10.61	□□□□□ -0.71
LGR5-204	ENST00000547310	SKOR1	P84550	965 aa		10.61	□□□□□ -0.71
LGR5-204	ENST00000547310	HIC1	Q14526	733 aa		10.61	□□□□□ -0.71
LGR5-204	ENST00000547310	ZC3H15	Q8WU90	426 aa	Known RBP	10.61	□□□□□ -0.71
LGR5-204	ENST00000547310	DAXX	Q9UER7	740 aa	Predicted RBP	10.61	□□□□□ -0.71
LGR5-204	ENST00000547310	GCGR	P47871	477 aa		10.6	□□□□□ -0.71
LGR5-204	ENST00000547310	METTL3	Q86U44	580 aa	Known RBP	10.6	□□□□□ -0.71
LGR5-204	ENST00000547310	RNF19B	Q6ZMZ0	732 aa		10.59	□□□□□ -0.71
LGR5-204	ENST00000547310	RDH13	Q8NBN7	331 aa		10.59	□□□□□ -0.71
LGR5-204	ENST00000547310	ZMYND10	O75800	440 aa		10.58	□□□□□ -0.72
LGR5-204	ENST00000547310	GNPAT	O15228	680 aa		10.57	□□□□□ -0.72
LGR5-204	ENST00000547310	SIAH2	O43255	324 aa		10.57	□□□□□ -0.72
LGR5-204	ENST00000547310	ZFP42	Q96MM3	310 aa		10.57	□□□□□ -0.72
LGR5-204	ENST00000547310	RNF225	M0QZC1	329 aa	Predicted RBP	10.56	□□□□□ -0.72
LGR5-204	ENST00000547310	DXO	O77932	396 aa	Known RBP	10.55	□□□□□ -0.72
LGR5-204	ENST00000547310	IGHA1	P01876	353 aa		10.55	□□□□□ -0.72
LGR5-204	ENST00000547310		Q3C1V9	767 aa		10.55	□□□□□ -0.72
LGR5-204	ENST00000547310	GRIPAP1	Q4V328	841 aa		10.55	□□□□□ -0.72
LGR5-204	ENST00000547310	XP32	Q5T750	250 aa		10.55	□□□□□ -0.72
LGR5-204	ENST00000547310	BARGIN	Q6ZT62	677 aa		10.55	□□□□□ -0.72
LGR5-204	ENST00000547310	DDX11L8	A8MPP1	907 aa		10.52	□□□□□ -0.73
LGR5-204	ENST00000547310	WASF2	Q9Y6W5	498 aa		10.51	□□□□□ -0.73
LGR5-204	ENST00000547310	SULF1	Q8IWU6	871 aa		10.5	□□□□□ -0.73
LGR5-204	ENST00000547310	MINK1	Q8N4C8	1332 aa	Predicted RBP	10.5	□□□□□ -0.73
LGR5-204	ENST00000547310	MAP2K5	Q13163	448 aa		10.49	□□□□□ -0.73
LGR5-204	ENST00000547310	USB1	Q9BQ65	265 aa	Known RBP	10.49	□□□□□ -0.73
LGR5-204	ENST00000547310	ADAMTS8	Q9UP79	889 aa		10.49	□□□□□ -0.73
LGR5-204	ENST00000547310	TPRN	Q4KMQ1	711 aa		10.48	□□□□□ -0.73
LGR5-204	ENST00000547310	KRTAP4-8	Q9BYQ9	185 aa		10.48	□□□□□ -0.73
LGR5-204	ENST00000547310	IRF6	O14896	467 aa		10.47	□□□□□ -0.73
LGR5-204	ENST00000547310	DNMT3A	Q9Y6K1	912 aa	Predicted RBP	10.47	□□□□□ -0.73
LGR5-204	ENST00000547310	CCDC24	Q8N4L8	307 aa		10.46	□□□□□ -0.73
LGR5-204	ENST00000547310	FOXK2	Q01167	660 aa		10.45	□□□□□ -0.74
LGR5-204	ENST00000547310	SCARF1	Q14162	830 aa		10.44	□□□□□ -0.74
LGR5-204	ENST00000547310	MRPL14	Q6P1L8	145 aa	Known RBP	10.44	□□□□□ -0.74
LGR5-204	ENST00000547310	EHBP1	Q8NDI1	1231 aa		10.44	□□□□□ -0.74
LGR5-204	ENST00000547310	GPAT2	Q6NUI2	795 aa		10.43	□□□□□ -0.74
LGR5-204	ENST00000547310	KRI1	Q8N9T8	703 aa	Known RBP	10.42	□□□□□ -0.74
LGR5-204	ENST00000547310	AK7	Q96M32	723 aa		10.4	□□□□□ -0.74
LGR5-204	ENST00000547310	PPFIA3	O75145	1194 aa		10.39	□□□□□ -0.75
LGR5-204	ENST00000547310	CCDC102A	Q96A19	550 aa		10.39	□□□□□ -0.75
LGR5-204	ENST00000547310	MPND	Q8N594	471 aa		10.38	□□□□□ -0.75
LGR5-204	ENST00000547310	PURB	Q96QR8	312 aa	Known RBP	10.38	□□□□□ -0.75
LGR5-204	ENST00000547310	SLC24A3	Q9HC58	644 aa		10.38	□□□□□ -0.75
LGR5-204	ENST00000547310	SOBP	A7XYQ1	873 aa		10.37	□□□□□ -0.75
LGR5-204	ENST00000547310	PRKCSH	P14314	528 aa	Predicted RBP	10.37	□□□□□ -0.75
LGR5-204	ENST00000547310	KRT76	Q01546	638 aa		10.35	□□□□□ -0.75
LGR5-204	ENST00000547310	AMHR2	Q16671	573 aa		10.35	□□□□□ -0.75
LGR5-204	ENST00000547310	KANK3	Q6NY19	840 aa		10.35	□□□□□ -0.75
LGR5-204	ENST00000547310	TRIM66	O15016	1216 aa		10.34	□□□□□ -0.75
LGR5-204	ENST00000547310	PHOX2B	Q99453	314 aa		10.34	□□□□□ -0.75
LGR5-204	ENST00000547310	PLEKHG3	A1L390	1219 aa		10.33	□□□□□ -0.76
LGR5-204	ENST00000547310	SH3BP2	P78314	561 aa		10.33	□□□□□ -0.76
LGR5-204	ENST00000547310	PTCRA	Q6ISU1	281 aa	Predicted RBP	10.33	□□□□□ -0.76

Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms