RNA–Protein interactions for RNA: ENST00000546084.5

TRAF1-203, Transcript of TNF receptor associated factor 1, humanhuman

TSL 2 BASIC

Gene TRAF1, Length 3,715 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-203ENST00000546084 PRAG1Q86YV5 1406 aa12.35□□□□□ -0.43
TRAF1-203ENST00000546084 KDM2BQ8NHM5 1336 aa12.34□□□□□ -0.43
TRAF1-203ENST00000546084 ADAMTS12P58397 1594 aa12.34□□□□□ -0.43
TRAF1-203ENST00000546084 KIAA0556O60303 1618 aa12.34□□□□□ -0.43
TRAF1-203ENST00000546084 MIS18AQ9NYP9 233 aa12.34□□□□□ -0.43
TRAF1-203ENST00000546084 RLBP1P12271 317 aa12.34□□□□□ -0.43
TRAF1-203ENST00000546084 TRHP20396 242 aaPredicted RBP12.34□□□□□ -0.43
TRAF1-203ENST00000546084 DIAPH1O60610 1272 aaKnown RBP12.34□□□□□ -0.43
TRAF1-203ENST00000546084 NSD3Q9BZ95 1437 aa12.34□□□□□ -0.43
TRAF1-203ENST00000546084 NOB1Q9ULX3 412 aaKnown RBP12.34□□□□□ -0.43
TRAF1-203ENST00000546084 NCKAP5LQ9HCH0 1330 aa12.33□□□□□ -0.44
TRAF1-203ENST00000546084 IDI1Q13907 227 aa12.33□□□□□ -0.44
TRAF1-203ENST00000546084 PMFBP1Q8TBY8 1022 aa12.33□□□□□ -0.44
TRAF1-203ENST00000546084 HSCBQ8IWL3 235 aa12.33□□□□□ -0.44
TRAF1-203ENST00000546084 ARID3AQ99856 593 aa12.33□□□□□ -0.44
TRAF1-203ENST00000546084 EIF4G3O43432 1585 aaKnown RBP12.32□□□□□ -0.44
TRAF1-203ENST00000546084 ADGRL2O95490 1459 aa12.32□□□□□ -0.44
TRAF1-203ENST00000546084 ZRANB1Q9UGI0 708 aa12.32□□□□□ -0.44
TRAF1-203ENST00000546084 ARHGEF12Q9NZN5 1544 aa12.32□□□□□ -0.44
TRAF1-203ENST00000546084 PCDHB15Q9Y5E8 787 aa12.31□□□□□ -0.44
TRAF1-203ENST00000546084 SLC26A8Q96RN1 970 aa12.3□□□□□ -0.44
TRAF1-203ENST00000546084 POLR1AO95602 1720 aaPredicted RBP12.3□□□□□ -0.44
TRAF1-203ENST00000546084 CDK19Q9BWU1 502 aa12.29□□□□□ -0.44
TRAF1-203ENST00000546084 PBRM1Q86U86 1689 aa12.29□□□□□ -0.44
TRAF1-203ENST00000546084 FAM135AQ9P2D6 1515 aa12.29□□□□□ -0.44
TRAF1-203ENST00000546084 FAM83GA6ND36 823 aa12.29□□□□□ -0.44
TRAF1-203ENST00000546084 PLCB2Q00722 1185 aa12.29□□□□□ -0.44
TRAF1-203ENST00000546084 SSH1Q8WYL5 1049 aa12.29□□□□□ -0.44
TRAF1-203ENST00000546084 CCDC9Q9Y3X0 531 aaKnown RBP12.29□□□□□ -0.44
TRAF1-203ENST00000546084 EMILIN1Q9Y6C2 1016 aa12.29□□□□□ -0.44
TRAF1-203ENST00000546084 RARSP54136 660 aaKnown RBP12.28□□□□□ -0.44
TRAF1-203ENST00000546084 NGDNQ8NEJ9 315 aaKnown RBP12.28□□□□□ -0.44
TRAF1-203ENST00000546084 IPO8O15397 1037 aaKnown RBP12.28□□□□□ -0.44
TRAF1-203ENST00000546084 NAP1L5Q96NT1 182 aaPredicted RBP12.28□□□□□ -0.44
TRAF1-203ENST00000546084 NOS1P29475 1434 aa12.28□□□□□ -0.44
TRAF1-203ENST00000546084 BLMP54132 1417 aaPredicted RBP12.28□□□□□ -0.44
TRAF1-203ENST00000546084 TMEM57Q8N5G2 664 aa12.27□□□□□ -0.44
TRAF1-203ENST00000546084 ITSN2Q9NZM3 1697 aa12.27□□□□□ -0.44
TRAF1-203ENST00000546084 COL17A1Q9UMD9 1497 aaPredicted RBP12.27□□□□□ -0.45
TRAF1-203ENST00000546084 A2MP01023 1474 aa12.27□□□□□ -0.45
TRAF1-203ENST00000546084 KLHL34Q8N239 644 aa12.26□□□□□ -0.45
TRAF1-203ENST00000546084 NME9Q86XW9 330 aa12.26□□□□□ -0.45
TRAF1-203ENST00000546084 RTF1Q92541 710 aaKnown RBP12.26□□□□□ -0.45
TRAF1-203ENST00000546084 EIF2S2P20042 333 aaKnown RBP12.26□□□□□ -0.45
TRAF1-203ENST00000546084 L1TD1Q5T7N2 865 aaKnown RBP12.26□□□□□ -0.45
TRAF1-203ENST00000546084 AEBP2Q6ZN18 517 aaPredicted RBP12.25□□□□□ -0.45
TRAF1-203ENST00000546084 AMPHP49418 695 aa12.25□□□□□ -0.45
TRAF1-203ENST00000546084 COG3Q96JB2 828 aa12.25□□□□□ -0.45
TRAF1-203ENST00000546084 C22orf23Q9BZE7 217 aa12.25□□□□□ -0.45
TRAF1-203ENST00000546084 TRIM6-TRIM34B2RNG4 842 aa12.25□□□□□ -0.45
TRAF1-203ENST00000546084 TMPOP42166 694 aaKnown RBP12.25□□□□□ -0.45
TRAF1-203ENST00000546084 ZMYM4Q5VZL5 1548 aa12.25□□□□□ -0.45
TRAF1-203ENST00000546084 OS9Q13438 667 aaPredicted RBP12.24□□□□□ -0.45
TRAF1-203ENST00000546084 PDE3AQ14432 1141 aa12.24□□□□□ -0.45
TRAF1-203ENST00000546084 KRT24Q2M2I5 525 aa12.24□□□□□ -0.45
TRAF1-203ENST00000546084 CEBPAP49715 358 aaPredicted RBP12.24□□□□□ -0.45
TRAF1-203ENST00000546084 TRIM44Q96DX7 344 aaPredicted RBP12.24□□□□□ -0.45
TRAF1-203ENST00000546084 CEP170Q5SW79 1584 aa12.24□□□□□ -0.45
TRAF1-203ENST00000546084 ADGBQ8N7X0 1667 aa12.24□□□□□ -0.45
TRAF1-203ENST00000546084 GOLGA6L3A6NEY3 463 aa12.23□□□□□ -0.45
TRAF1-203ENST00000546084 SULT6B1Q6IMI4 303 aa12.23□□□□□ -0.45
TRAF1-203ENST00000546084 NGEFQ8N5V2 710 aa12.23□□□□□ -0.45
TRAF1-203ENST00000546084 NKTRP30414 1462 aaKnown RBP12.23□□□□□ -0.45
TRAF1-203ENST00000546084 MCM10Q7L590 875 aa12.23□□□□□ -0.45
TRAF1-203ENST00000546084 RILPL2Q969X0 211 aa12.23□□□□□ -0.45
TRAF1-203ENST00000546084 RSPH6AQ9H0K4 717 aa12.23□□□□□ -0.45
TRAF1-203ENST00000546084 TRIM27P14373 513 aa12.22□□□□□ -0.45
TRAF1-203ENST00000546084 FAM43AQ8N2R8 423 aa12.22□□□□□ -0.45
TRAF1-203ENST00000546084 ANP32BQ92688 251 aaKnown RBP12.22□□□□□ -0.45
TRAF1-203ENST00000546084 GPRASP1Q5JY77 1395 aa12.22□□□□□ -0.45
TRAF1-203ENST00000546084 ZNF330Q9Y3S2 320 aaPredicted RBP12.22□□□□□ -0.45
TRAF1-203ENST00000546084 MAGI2Q86UL8 1455 aa12.21□□□□□ -0.45
TRAF1-203ENST00000546084 ZNF521Q96K83 1311 aa12.21□□□□□ -0.45
TRAF1-203ENST00000546084 DTNBO60941 627 aa12.21□□□□□ -0.45
TRAF1-203ENST00000546084 MPNDQ8N594 471 aa12.21□□□□□ -0.45
TRAF1-203ENST00000546084 DDX19BQ9UMR2 479 aa12.21□□□□□ -0.45
TRAF1-203ENST00000546084 SMARCA5O60264 1052 aaPredicted RBP12.21□□□□□ -0.46
TRAF1-203ENST00000546084 XPCQ01831 940 aaPredicted RBP12.21□□□□□ -0.46
TRAF1-203ENST00000546084 MVPQ14764 893 aaKnown RBP12.21□□□□□ -0.46
TRAF1-203ENST00000546084 BCL11BQ9C0K0 894 aaPredicted RBP12.21□□□□□ -0.46
TRAF1-203ENST00000546084 ADGRL1O94910 1474 aa12.2□□□□□ -0.46
TRAF1-203ENST00000546084 TSHZ3Q63HK5 1081 aa12.2□□□□□ -0.46
TRAF1-203ENST00000546084 SHANK2Q9UPX8 1470 aa12.2□□□□□ -0.46
TRAF1-203ENST00000546084 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.2□□□□□ -0.46
TRAF1-203ENST00000546084 ATF7IPQ6VMQ6 1270 aa12.2□□□□□ -0.46
TRAF1-203ENST00000546084 TBC1D2Q9BYX2 928 aa12.2□□□□□ -0.46
TRAF1-203ENST00000546084 TSPYL6Q8N831 410 aa12.19□□□□□ -0.46
TRAF1-203ENST00000546084 FANCAO15360 1455 aa12.19□□□□□ -0.46
TRAF1-203ENST00000546084 PLA2R1Q13018 1463 aa12.19□□□□□ -0.46
TRAF1-203ENST00000546084 PHACTR3Q96KR7 559 aa12.19□□□□□ -0.46
TRAF1-203ENST00000546084 PNNQ9H307 717 aaKnown RBP12.19□□□□□ -0.46
TRAF1-203ENST00000546084 KDM5DQ9BY66 1539 aa12.19□□□□□ -0.46
TRAF1-203ENST00000546084 TWISTNBQ3B726 338 aaPredicted RBP12.19□□□□□ -0.46
TRAF1-203ENST00000546084 F6X3S4 739 aa12.18□□□□□ -0.46
TRAF1-203ENST00000546084 FYB1O15117 783 aa12.18□□□□□ -0.46
TRAF1-203ENST00000546084 UGGT1Q9NYU2 1555 aa12.18□□□□□ -0.46
TRAF1-203ENST00000546084 RBM42Q9BTD8 480 aaKnown RBP12.18□□□□□ -0.46
TRAF1-203ENST00000546084 ZMYND15Q9H091 742 aa12.18□□□□□ -0.46
TRAF1-203ENST00000546084 ABCC10Q5T3U5 1492 aa12.17□□□□□ -0.46
TRAF1-203ENST00000546084 ATAD2Q6PL18 1390 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms