RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 NEURL4Q96JN8 1562 aa20.43■□□□□ 0.86
LDLR-204ENST00000545707 SBNO2Q9Y2G9 1366 aa20.42■□□□□ 0.86
LDLR-204ENST00000545707 NFKBIBQ15653 356 aa20.42■□□□□ 0.86
LDLR-204ENST00000545707 CLUAP1Q96AJ1 413 aa20.42■□□□□ 0.86
LDLR-204ENST00000545707 RUNDC1Q96C34 613 aa20.42■□□□□ 0.86
LDLR-204ENST00000545707 NPATQ14207 1427 aa20.42■□□□□ 0.86
LDLR-204ENST00000545707 PDE3AQ14432 1141 aa20.42■□□□□ 0.86
LDLR-204ENST00000545707 CGNL1Q0VF96 1302 aa20.4■□□□□ 0.86
LDLR-204ENST00000545707 RARSP54136 660 aaKnown RBP20.4■□□□□ 0.86
LDLR-204ENST00000545707 IFT172Q9UG01 1749 aa20.4■□□□□ 0.86
LDLR-204ENST00000545707 RLBP1P12271 317 aa20.39■□□□□ 0.86
LDLR-204ENST00000545707 NGEFQ8N5V2 710 aa20.39■□□□□ 0.86
LDLR-204ENST00000545707 SEC24BO95487 1268 aa20.39■□□□□ 0.85
LDLR-204ENST00000545707 IL27Q8NEV9 243 aa20.39■□□□□ 0.85
LDLR-204ENST00000545707 ADGRB3O60242 1522 aa20.38■□□□□ 0.85
LDLR-204ENST00000545707 CABP2Q9NPB3 220 aa20.38■□□□□ 0.85
LDLR-204ENST00000545707 ZNF518AQ6AHZ1 1483 aa20.37■□□□□ 0.85
LDLR-204ENST00000545707 MYO3AQ8NEV4 1616 aa20.36■□□□□ 0.85
LDLR-204ENST00000545707 PCDHB15Q9Y5E8 787 aa20.35■□□□□ 0.85
LDLR-204ENST00000545707 U2AF1L5P0DN76 240 aaPredicted RBP20.35■□□□□ 0.85
LDLR-204ENST00000545707 U2AF1Q01081 240 aaKnown RBP eCLIP20.35■□□□□ 0.85
LDLR-204ENST00000545707 ADGRB1O14514 1584 aa20.34■□□□□ 0.85
LDLR-204ENST00000545707 LMTK2Q8IWU2 1503 aa20.34■□□□□ 0.85
LDLR-204ENST00000545707 SHPRHQ149N8 1683 aa20.34■□□□□ 0.85
LDLR-204ENST00000545707 NPM1P06748 294 aaKnown RBP eCLIP20.34■□□□□ 0.85
LDLR-204ENST00000545707 USP19O94966 1318 aa20.34■□□□□ 0.85
LDLR-204ENST00000545707 RAPGEF3O95398 923 aa20.34■□□□□ 0.85
LDLR-204ENST00000545707 STK26Q9P289 416 aa20.34■□□□□ 0.85
LDLR-204ENST00000545707 PHF23Q9BUL5 403 aaPredicted RBP20.33■□□□□ 0.85
LDLR-204ENST00000545707 CFAP53Q96M91 514 aa20.33■□□□□ 0.84
LDLR-204ENST00000545707 RTN4Q9NQC3 1192 aaKnown RBP20.33■□□□□ 0.84
LDLR-204ENST00000545707 SETBP1Q9Y6X0 1596 aa20.32■□□□□ 0.84
LDLR-204ENST00000545707 QRICH2Q9H0J4 1663 aa20.32■□□□□ 0.84
LDLR-204ENST00000545707 CD109Q6YHK3 1445 aa20.31■□□□□ 0.84
LDLR-204ENST00000545707 FRAT2O75474 233 aaPredicted RBP20.31■□□□□ 0.84
LDLR-204ENST00000545707 WDR63Q8IWG1 891 aa20.31■□□□□ 0.84
LDLR-204ENST00000545707 FRMPD1Q5SYB0 1578 aa20.31■□□□□ 0.84
LDLR-204ENST00000545707 EVC2Q86UK5 1308 aa20.3■□□□□ 0.84
LDLR-204ENST00000545707 IQSEC2Q5JU85 1478 aa20.3■□□□□ 0.84
LDLR-204ENST00000545707 TSR2Q969E8 191 aaKnown RBP20.29■□□□□ 0.84
LDLR-204ENST00000545707 GSE1Q14687 1217 aa20.29■□□□□ 0.84
LDLR-204ENST00000545707 POGZQ7Z3K3 1410 aa20.28■□□□□ 0.84
LDLR-204ENST00000545707 GGNBP2Q9H3C7 697 aa20.28■□□□□ 0.84
LDLR-204ENST00000545707 RPGRIP1LQ68CZ1 1315 aa20.28■□□□□ 0.84
LDLR-204ENST00000545707 PPLO60437 1756 aa20.28■□□□□ 0.84
LDLR-204ENST00000545707 NINLQ9Y2I6 1382 aa20.28■□□□□ 0.84
LDLR-204ENST00000545707 U2SURPO15042 1029 aaKnown RBP20.27■□□□□ 0.84
LDLR-204ENST00000545707 VGFO15240 615 aaPredicted RBP20.27■□□□□ 0.84
LDLR-204ENST00000545707 MAPK8IP3Q9UPT6 1336 aa20.27■□□□□ 0.84
LDLR-204ENST00000545707 PDZRN3Q9UPQ7 1066 aa20.26■□□□□ 0.83
LDLR-204ENST00000545707 SRPK2P78362 688 aaKnown RBP20.26■□□□□ 0.83
LDLR-204ENST00000545707 IDI1Q13907 227 aa20.26■□□□□ 0.83
LDLR-204ENST00000545707 ZC3H13Q5T200 1668 aaKnown RBP20.25■□□□□ 0.83
LDLR-204ENST00000545707 PMFBP1Q8TBY8 1022 aa20.25■□□□□ 0.83
LDLR-204ENST00000545707 ANKRD36BQ8N2N9 1353 aa20.25■□□□□ 0.83
LDLR-204ENST00000545707 CCDC27Q2M243 656 aa20.25■□□□□ 0.83
LDLR-204ENST00000545707 TULP4Q9NRJ4 1543 aa20.25■□□□□ 0.83
LDLR-204ENST00000545707 ABCC3O15438 1527 aa20.24■□□□□ 0.83
LDLR-204ENST00000545707 MYH16Q9H6N6 1097 aa20.24■□□□□ 0.83
LDLR-204ENST00000545707 MLH3Q9UHC1 1453 aa20.23■□□□□ 0.83
LDLR-204ENST00000545707 BRPF3Q9ULD4 1205 aa20.23■□□□□ 0.83
LDLR-204ENST00000545707 GLI2P10070 1586 aa20.23■□□□□ 0.83
LDLR-204ENST00000545707 MINK1Q8N4C8 1332 aaPredicted RBP20.22■□□□□ 0.83
LDLR-204ENST00000545707 EXOSC9Q06265 439 aaKnown RBP20.22■□□□□ 0.83
LDLR-204ENST00000545707 A0A1W2PP64 1363 aa20.21■□□□□ 0.83
LDLR-204ENST00000545707 SLKQ9H2G2 1235 aaPredicted RBP20.21■□□□□ 0.83
LDLR-204ENST00000545707 SIGLEC1Q9BZZ2 1709 aa20.2■□□□□ 0.82
LDLR-204ENST00000545707 MVPQ14764 893 aaKnown RBP20.19■□□□□ 0.82
LDLR-204ENST00000545707 FTSJ3Q8IY81 847 aaKnown RBP20.19■□□□□ 0.82
LDLR-204ENST00000545707 HECW2Q9P2P5 1572 aa20.19■□□□□ 0.82
LDLR-204ENST00000545707 RWDD1Q9H446 243 aaPredicted RBP20.19■□□□□ 0.82
LDLR-204ENST00000545707 ZKSCAN2Q63HK3 967 aa20.18■□□□□ 0.82
LDLR-204ENST00000545707 DZIP1LQ8IYY4 767 aaKnown RBP20.18■□□□□ 0.82
LDLR-204ENST00000545707 SMC4Q9NTJ3 1288 aa20.18■□□□□ 0.82
LDLR-204ENST00000545707 TMPOP42166 694 aaKnown RBP20.18■□□□□ 0.82
LDLR-204ENST00000545707 PLEKHF1Q96S99 279 aa20.18■□□□□ 0.82
LDLR-204ENST00000545707 TRIM35Q9UPQ4 493 aa20.18■□□□□ 0.82
LDLR-204ENST00000545707 FYB1O15117 783 aa20.17■□□□□ 0.82
LDLR-204ENST00000545707 PRAM1Q96QH2 718 aa20.17■□□□□ 0.82
LDLR-204ENST00000545707 NEXMIFQ5QGS0 1516 aa20.16■□□□□ 0.82
LDLR-204ENST00000545707 FBLN1P23142 703 aa20.16■□□□□ 0.82
LDLR-204ENST00000545707 SSH1Q8WYL5 1049 aa20.16■□□□□ 0.82
LDLR-204ENST00000545707 PUS7Q96PZ0 661 aaKnown RBP20.16■□□□□ 0.82
LDLR-204ENST00000545707 NLRP1Q9C000 1473 aa20.16■□□□□ 0.82
LDLR-204ENST00000545707 NSD2O96028 1365 aa20.15■□□□□ 0.82
LDLR-204ENST00000545707 TRIM27P14373 513 aa20.15■□□□□ 0.82
LDLR-204ENST00000545707 USP32Q8NFA0 1604 aa20.15■□□□□ 0.82
LDLR-204ENST00000545707 ARHGEF28Q8N1W1 1705 aaKnown RBP20.15■□□□□ 0.82
LDLR-204ENST00000545707 POGKQ9P215 609 aa20.15■□□□□ 0.82
LDLR-204ENST00000545707 CAMSAP1Q5T5Y3 1602 aa20.14■□□□□ 0.82
LDLR-204ENST00000545707 AAMPQ13685 434 aa20.14■□□□□ 0.81
LDLR-204ENST00000545707 ITPRIPQ8IWB1 547 aa20.14■□□□□ 0.81
LDLR-204ENST00000545707 ABCC11Q96J66 1382 aa20.14■□□□□ 0.81
LDLR-204ENST00000545707 RIPK4P57078 832 aa20.13■□□□□ 0.81
LDLR-204ENST00000545707 BECN1Q14457 450 aa20.13■□□□□ 0.81
LDLR-204ENST00000545707 OSCARQ8IYS5 282 aa20.13■□□□□ 0.81
LDLR-204ENST00000545707 SPRYD3Q8NCJ5 442 aa20.13■□□□□ 0.81
LDLR-204ENST00000545707 NOB1Q9ULX3 412 aaKnown RBP20.13■□□□□ 0.81
LDLR-204ENST00000545707 FBXO31Q5XUX0 539 aaPredicted RBP20.12■□□□□ 0.81
LDLR-204ENST00000545707 TBC1D32Q96NH3 1257 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 202 ms