RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 KIDINS220Q9ULH0 1771 aa11.25□□□□□ -0.61
TDP1-204ENST00000545686 IGHDP01880 384 aa11.25□□□□□ -0.61
TDP1-204ENST00000545686 PMFBP1Q8TBY8 1022 aa11.25□□□□□ -0.61
TDP1-204ENST00000545686 FRAT2O75474 233 aaPredicted RBP11.25□□□□□ -0.61
TDP1-204ENST00000545686 PHF23Q9BUL5 403 aaPredicted RBP11.24□□□□□ -0.61
TDP1-204ENST00000545686 BRPF3Q9ULD4 1205 aa11.24□□□□□ -0.61
TDP1-204ENST00000545686 NSD3Q9BZ95 1437 aa11.24□□□□□ -0.61
TDP1-204ENST00000545686 CANXP27824 592 aaKnown RBP11.24□□□□□ -0.61
TDP1-204ENST00000545686 DMRT2Q9Y5R5 561 aa11.24□□□□□ -0.61
TDP1-204ENST00000545686 ADGRB1O14514 1584 aa11.23□□□□□ -0.61
TDP1-204ENST00000545686 ZNF518AQ6AHZ1 1483 aa11.23□□□□□ -0.61
TDP1-204ENST00000545686 CFAP70Q5T0N1 1121 aa11.23□□□□□ -0.61
TDP1-204ENST00000545686 WDR63Q8IWG1 891 aa11.23□□□□□ -0.61
TDP1-204ENST00000545686 AFAP1Q8N556 730 aa11.23□□□□□ -0.61
TDP1-204ENST00000545686 RUNDC1Q96C34 613 aa11.23□□□□□ -0.61
TDP1-204ENST00000545686 RTN4Q9NQC3 1192 aaKnown RBP11.23□□□□□ -0.61
TDP1-204ENST00000545686 CCDC27Q2M243 656 aa11.23□□□□□ -0.61
TDP1-204ENST00000545686 ARHGEF28Q8N1W1 1705 aaKnown RBP11.22□□□□□ -0.61
TDP1-204ENST00000545686 ADGRF5Q8IZF2 1346 aa11.22□□□□□ -0.61
TDP1-204ENST00000545686 ANKRD26Q9UPS8 1709 aa11.22□□□□□ -0.61
TDP1-204ENST00000545686 ANO8Q9HCE9 1232 aaPredicted RBP11.21□□□□□ -0.61
TDP1-204ENST00000545686 NSD2O96028 1365 aa11.21□□□□□ -0.61
TDP1-204ENST00000545686 RARSP54136 660 aaKnown RBP11.21□□□□□ -0.61
TDP1-204ENST00000545686 PANK1Q8TE04 598 aa11.21□□□□□ -0.61
TDP1-204ENST00000545686 COG6Q9Y2V7 657 aa11.21□□□□□ -0.61
TDP1-204ENST00000545686 UPF2Q9HAU5 1272 aaKnown RBP11.2□□□□□ -0.62
TDP1-204ENST00000545686 KIF3BO15066 747 aa11.2□□□□□ -0.62
TDP1-204ENST00000545686 CFAP74Q9C0B2 1584 aa11.2□□□□□ -0.62
TDP1-204ENST00000545686 NOS1P29475 1434 aa11.2□□□□□ -0.62
TDP1-204ENST00000545686 GLI2P10070 1586 aa11.19□□□□□ -0.62
TDP1-204ENST00000545686 HECW2Q9P2P5 1572 aa11.19□□□□□ -0.62
TDP1-204ENST00000545686 MORC1Q86VD1 984 aa11.19□□□□□ -0.62
TDP1-204ENST00000545686 TBC1D32Q96NH3 1257 aa11.19□□□□□ -0.62
TDP1-204ENST00000545686 PUS7Q96PZ0 661 aaKnown RBP11.19□□□□□ -0.62
TDP1-204ENST00000545686 FAM43AQ8N2R8 423 aa11.18□□□□□ -0.62
TDP1-204ENST00000545686 CT47B1P0C2W7 299 aaPredicted RBP11.18□□□□□ -0.62
TDP1-204ENST00000545686 CFAP53Q96M91 514 aa11.18□□□□□ -0.62
TDP1-204ENST00000545686 PIK3C2BO00750 1634 aa11.18□□□□□ -0.62
TDP1-204ENST00000545686 CAMSAP1Q5T5Y3 1602 aa11.18□□□□□ -0.62
TDP1-204ENST00000545686 CFAP65Q6ZU64 1925 aaKnown RBP11.17□□□□□ -0.62
TDP1-204ENST00000545686 SEC24BO95487 1268 aa11.17□□□□□ -0.62
TDP1-204ENST00000545686 TCP11L2Q8N4U5 519 aa11.17□□□□□ -0.62
TDP1-204ENST00000545686 RWDD1Q9H446 243 aaPredicted RBP11.17□□□□□ -0.62
TDP1-204ENST00000545686 MYH16Q9H6N6 1097 aa11.17□□□□□ -0.62
TDP1-204ENST00000545686 ANTXR1Q9H6X2 564 aa11.17□□□□□ -0.62
TDP1-204ENST00000545686 L1TD1Q5T7N2 865 aaKnown RBP11.16□□□□□ -0.62
TDP1-204ENST00000545686 C14orf93Q9H972 538 aaKnown RBP11.16□□□□□ -0.62
TDP1-204ENST00000545686 PCDHB15Q9Y5E8 787 aa11.16□□□□□ -0.62
TDP1-204ENST00000545686 TULP4Q9NRJ4 1543 aa11.16□□□□□ -0.62
TDP1-204ENST00000545686 RPGRIP1LQ68CZ1 1315 aa11.15□□□□□ -0.62
TDP1-204ENST00000545686 PDZRN3Q9UPQ7 1066 aa11.15□□□□□ -0.62
TDP1-204ENST00000545686 ANKRD36BQ8N2N9 1353 aa11.15□□□□□ -0.62
TDP1-204ENST00000545686 RLBP1P12271 317 aa11.15□□□□□ -0.62
TDP1-204ENST00000545686 MVPQ14764 893 aaKnown RBP11.14□□□□□ -0.63
TDP1-204ENST00000545686 CLTCQ00610 1675 aaKnown RBP11.14□□□□□ -0.63
TDP1-204ENST00000545686 NPATQ14207 1427 aa11.14□□□□□ -0.63
TDP1-204ENST00000545686 FRMPD1Q5SYB0 1578 aa11.13□□□□□ -0.63
TDP1-204ENST00000545686 ZKSCAN2Q63HK3 967 aa11.13□□□□□ -0.63
TDP1-204ENST00000545686 POGKQ9P215 609 aa11.13□□□□□ -0.63
TDP1-204ENST00000545686 SIGLEC1Q9BZZ2 1709 aa11.13□□□□□ -0.63
TDP1-204ENST00000545686 MTHFSP49914 203 aa11.12□□□□□ -0.63
TDP1-204ENST00000545686 TBC1D2Q9BYX2 928 aa11.12□□□□□ -0.63
TDP1-204ENST00000545686 SLC12A5Q9H2X9 1139 aa11.12□□□□□ -0.63
TDP1-204ENST00000545686 RRP7AQ9Y3A4 280 aaKnown RBP11.12□□□□□ -0.63
TDP1-204ENST00000545686 ABCC3O15438 1527 aa11.12□□□□□ -0.63
TDP1-204ENST00000545686 NEXMIFQ5QGS0 1516 aa11.12□□□□□ -0.63
TDP1-204ENST00000545686 COL3A1P02461 1466 aaPredicted RBP11.12□□□□□ -0.63
TDP1-204ENST00000545686 KIF20BQ96Q89 1820 aa11.12□□□□□ -0.63
TDP1-204ENST00000545686 PRKCSHP14314 528 aaPredicted RBP11.12□□□□□ -0.63
TDP1-204ENST00000545686 NEUROD2Q15784 382 aa11.12□□□□□ -0.63
TDP1-204ENST00000545686 SLKQ9H2G2 1235 aaPredicted RBP11.12□□□□□ -0.63
TDP1-204ENST00000545686 ABCC11Q96J66 1382 aa11.12□□□□□ -0.63
TDP1-204ENST00000545686 MED14O60244 1454 aa11.11□□□□□ -0.63
TDP1-204ENST00000545686 HDAC1Q13547 482 aaPredicted RBP11.11□□□□□ -0.63
TDP1-204ENST00000545686 MLH3Q9UHC1 1453 aa11.11□□□□□ -0.63
TDP1-204ENST00000545686 EVC2Q86UK5 1308 aa11.11□□□□□ -0.63
TDP1-204ENST00000545686 DZIP1LQ8IYY4 767 aaKnown RBP11.11□□□□□ -0.63
TDP1-204ENST00000545686 RSPH6AQ9H0K4 717 aa11.11□□□□□ -0.63
TDP1-204ENST00000545686 TRAK1Q9UPV9 953 aa11.11□□□□□ -0.63
TDP1-204ENST00000545686 IL16Q14005 1332 aa11.1□□□□□ -0.63
TDP1-204ENST00000545686 CDC42BPGQ6DT37 1551 aa11.1□□□□□ -0.63
TDP1-204ENST00000545686 FTSJ3Q8IY81 847 aaKnown RBP11.1□□□□□ -0.63
TDP1-204ENST00000545686 TNNQ9UQP3 1299 aa11.1□□□□□ -0.63
TDP1-204ENST00000545686 DDX19BQ9UMR2 479 aa11.09□□□□□ -0.63
TDP1-204ENST00000545686 POGZQ7Z3K3 1410 aa11.09□□□□□ -0.63
TDP1-204ENST00000545686 TNNT2P45379 298 aaPredicted RBP11.09□□□□□ -0.63
TDP1-204ENST00000545686 ASXL2Q76L83 1435 aa11.09□□□□□ -0.63
TDP1-204ENST00000545686 BCL2L13Q9BXK5 485 aa11.08□□□□□ -0.64
TDP1-204ENST00000545686 NCOA3Q9Y6Q9 1424 aa11.08□□□□□ -0.64
TDP1-204ENST00000545686 REREQ9P2R6 1566 aa11.08□□□□□ -0.64
TDP1-204ENST00000545686 CD109Q6YHK3 1445 aa11.08□□□□□ -0.64
TDP1-204ENST00000545686 CHMP5Q9NZZ3 219 aa11.08□□□□□ -0.64
TDP1-204ENST00000545686 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.08□□□□□ -0.64
TDP1-204ENST00000545686 MYO5BQ9ULV0 1848 aa11.07□□□□□ -0.64
TDP1-204ENST00000545686 ZFYVE9O95405 1425 aa11.07□□□□□ -0.64
TDP1-204ENST00000545686 U2AF1L5P0DN76 240 aaPredicted RBP11.07□□□□□ -0.64
TDP1-204ENST00000545686 U2AF1Q01081 240 aaKnown RBP eCLIP11.07□□□□□ -0.64
TDP1-204ENST00000545686 C22orf23Q9BZE7 217 aa11.07□□□□□ -0.64
TDP1-204ENST00000545686 FSD2A1L4K1 749 aa11.07□□□□□ -0.64
TDP1-204ENST00000545686 MCM4P33991 863 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 84.9 ms