RNA–Protein interactions for RNA: ENST00000545584.1

CHD4-213, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 4

Gene CHD4, Length 553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-213ENST00000545584 C14orf93Q9H972 538 aaKnown RBP29.21■■■□□ 2.27
CHD4-213ENST00000545584 WAPLQ7Z5K2 1190 aa29.2■■■□□ 2.26
CHD4-213ENST00000545584 MYOM2P54296 1465 aa29.2■■■□□ 2.26
CHD4-213ENST00000545584 YTHDC2Q9H6S0 1430 aaKnown RBP29.19■■■□□ 2.26
CHD4-213ENST00000545584 CDC42BPGQ6DT37 1551 aa29.18■■■□□ 2.26
CHD4-213ENST00000545584 ZNF772Q68DY9 489 aaPredicted RBP29.18■■■□□ 2.26
CHD4-213ENST00000545584 KNDC1Q76NI1 1749 aa29.17■■■□□ 2.26
CHD4-213ENST00000545584 NRXN1Q9ULB1 1477 aa29.17■■■□□ 2.26
CHD4-213ENST00000545584 DHX57Q6P158 1386 aaKnown RBP29.16■■■□□ 2.26
CHD4-213ENST00000545584 CFAP70Q5T0N1 1121 aa29.16■■■□□ 2.26
CHD4-213ENST00000545584 ESCO1Q5FWF5 840 aa29.15■■■□□ 2.26
CHD4-213ENST00000545584 LAMC1P11047 1609 aa29.15■■■□□ 2.26
CHD4-213ENST00000545584 SIRT1Q96EB6 747 aa29.14■■■□□ 2.26
CHD4-213ENST00000545584 PNPLA6Q8IY17 1366 aa29.13■■■□□ 2.25
CHD4-213ENST00000545584 SOS2Q07890 1332 aaPredicted RBP29.13■■■□□ 2.25
CHD4-213ENST00000545584 PLEKHH1Q9ULM0 1364 aa29.13■■■□□ 2.25
CHD4-213ENST00000545584 NPHP3Q7Z494 1330 aa29.1■■■□□ 2.25
CHD4-213ENST00000545584 NUTM2FA1L443 756 aa29.08■■■□□ 2.25
CHD4-213ENST00000545584 KDM2AQ9Y2K7 1162 aa29.08■■■□□ 2.25
CHD4-213ENST00000545584 DCAF11Q8TEB1 546 aa29.07■■■□□ 2.24
CHD4-213ENST00000545584 STAC3Q96MF2 364 aa29.07■■■□□ 2.24
CHD4-213ENST00000545584 AFF2P51816 1311 aa29.04■■■□□ 2.24
CHD4-213ENST00000545584 FOXO3O43524 673 aa29.04■■■□□ 2.24
CHD4-213ENST00000545584 C8orf37Q96NL8 207 aa29.04■■■□□ 2.24
CHD4-213ENST00000545584 PRAM1Q96QH2 718 aa29.03■■■□□ 2.24
CHD4-213ENST00000545584 POGKQ9P215 609 aa29.03■■■□□ 2.24
CHD4-213ENST00000545584 FMN2Q9NZ56 1722 aa29.01■■■□□ 2.23
CHD4-213ENST00000545584 ADAMTS2O95450 1211 aa29.01■■■□□ 2.23
CHD4-213ENST00000545584 RXRBP28702 533 aa29■■■□□ 2.23
CHD4-213ENST00000545584 SAFB2Q14151 953 aaKnown RBP eCLIP29■■■□□ 2.23
CHD4-213ENST00000545584 DLC1Q96QB1 1528 aa28.99■■■□□ 2.23
CHD4-213ENST00000545584 XPCQ01831 940 aaPredicted RBP28.98■■■□□ 2.23
CHD4-213ENST00000545584 NGLY1Q96IV0 654 aa28.98■■■□□ 2.23
CHD4-213ENST00000545584 PXDNQ92626 1479 aa28.97■■■□□ 2.23
CHD4-213ENST00000545584 TRAK1Q9UPV9 953 aa28.96■■■□□ 2.23
CHD4-213ENST00000545584 ADGRB1O14514 1584 aa28.95■■■□□ 2.22
CHD4-213ENST00000545584 KIF1AQ12756 1690 aa28.95■■■□□ 2.22
CHD4-213ENST00000545584 COL22A1Q8NFW1 1626 aaPredicted RBP28.93■■■□□ 2.22
CHD4-213ENST00000545584 QTRT2Q9H974 415 aaKnown RBP28.92■■■□□ 2.22
CHD4-213ENST00000545584 PHF8Q9UPP1 1060 aa28.92■■■□□ 2.22
CHD4-213ENST00000545584 KRT28Q7Z3Y7 464 aa28.89■■■□□ 2.22
CHD4-213ENST00000545584 RBM6P78332 1123 aaKnown RBP28.88■■■□□ 2.21
CHD4-213ENST00000545584 PSME1Q06323 249 aa28.88■■■□□ 2.21
CHD4-213ENST00000545584 CDK12Q9NYV4 1490 aaPredicted RBP28.88■■■□□ 2.21
CHD4-213ENST00000545584 USP21Q9UK80 565 aa28.87■■■□□ 2.21
CHD4-213ENST00000545584 RGPD8O14715 1765 aaPredicted RBP28.87■■■□□ 2.21
CHD4-213ENST00000545584 SPATA31A3Q5VYP0 1347 aa28.86■■■□□ 2.21
CHD4-213ENST00000545584 ANKARQ7Z5J8 1434 aa28.86■■■□□ 2.21
CHD4-213ENST00000545584 ADGRB2O60241 1585 aa28.85■■■□□ 2.21
CHD4-213ENST00000545584 HIRIP3Q9BW71 556 aaPredicted RBP28.85■■■□□ 2.21
CHD4-213ENST00000545584 MINK1Q8N4C8 1332 aaPredicted RBP28.85■■■□□ 2.21
CHD4-213ENST00000545584 EIF3AQ14152 1382 aaKnown RBP28.85■■■□□ 2.21
CHD4-213ENST00000545584 FNBP4Q8N3X1 1017 aaPredicted RBP28.83■■■□□ 2.21
CHD4-213ENST00000545584 TRPC5Q9UL62 973 aaPredicted RBP28.82■■■□□ 2.2
CHD4-213ENST00000545584 WASLO00401 505 aaPredicted RBP28.79■■■□□ 2.2
CHD4-213ENST00000545584 PMFBP1Q8TBY8 1022 aa28.79■■■□□ 2.2
CHD4-213ENST00000545584 TNS3Q68CZ2 1445 aa28.78■■■□□ 2.2
CHD4-213ENST00000545584 SBNO1A3KN83 1393 aa28.77■■■□□ 2.2
CHD4-213ENST00000545584 HAP1P54257 671 aaPredicted RBP28.77■■■□□ 2.2
CHD4-213ENST00000545584 USP32Q8NFA0 1604 aa28.76■■■□□ 2.2
CHD4-213ENST00000545584 LMOD2Q6P5Q4 547 aa28.76■■■□□ 2.19
CHD4-213ENST00000545584 MARF1Q9Y4F3 1742 aaKnown RBP28.76■■■□□ 2.19
CHD4-213ENST00000545584 RGS12O14924 1447 aa28.75■■■□□ 2.19
CHD4-213ENST00000545584 TULP4Q9NRJ4 1543 aa28.74■■■□□ 2.19
CHD4-213ENST00000545584 UPF1Q92900 1129 aaKnown RBP eCLIP28.74■■■□□ 2.19
CHD4-213ENST00000545584 ARHGEF28Q8N1W1 1705 aaKnown RBP28.74■■■□□ 2.19
CHD4-213ENST00000545584 KIAA1210Q9ULL0 1709 aa28.74■■■□□ 2.19
CHD4-213ENST00000545584 ARHGEF10O15013 1369 aa28.74■■■□□ 2.19
CHD4-213ENST00000545584 GPRASP1Q5JY77 1395 aa28.73■■■□□ 2.19
CHD4-213ENST00000545584 PRR36Q9H6K5 1346 aa28.71■■■□□ 2.19
CHD4-213ENST00000545584 ATRNO75882 1429 aa28.71■■■□□ 2.19
CHD4-213ENST00000545584 PLEKHG5O94827 1062 aa28.7■■■□□ 2.18
CHD4-213ENST00000545584 NGDNQ8NEJ9 315 aaKnown RBP28.69■■■□□ 2.18
CHD4-213ENST00000545584 BCL9LQ86UU0 1499 aa28.69■■■□□ 2.18
CHD4-213ENST00000545584 CABLES1Q8TDN4 633 aa28.68■■■□□ 2.18
CHD4-213ENST00000545584 NBPF1Q3BBV0 1214 aa28.67■■■□□ 2.18
CHD4-213ENST00000545584 UNC5CLQ8IV45 518 aa28.66■■■□□ 2.18
CHD4-213ENST00000545584 NUDT16Q96DE0 195 aaKnown RBP28.66■■■□□ 2.18
CHD4-213ENST00000545584 L3MBTL2Q969R5 705 aa28.64■■■□□ 2.18
CHD4-213ENST00000545584 GJD4Q96KN9 370 aaPredicted RBP28.64■■■□□ 2.18
CHD4-213ENST00000545584 CDK19Q9BWU1 502 aa28.64■■■□□ 2.18
CHD4-213ENST00000545584 SIN3AQ96ST3 1273 aa28.63■■■□□ 2.17
CHD4-213ENST00000545584 SLIT2O94813 1529 aa28.63■■■□□ 2.17
CHD4-213ENST00000545584 ITSN1Q15811 1721 aa28.62■■■□□ 2.17
CHD4-213ENST00000545584 ATP7BP35670 1465 aa28.61■■■□□ 2.17
CHD4-213ENST00000545584 NEUROD1Q13562 356 aa28.61■■■□□ 2.17
CHD4-213ENST00000545584 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.6■■■□□ 2.17
CHD4-213ENST00000545584 TRPM3Q9HCF6 1732 aaPredicted RBP28.6■■■□□ 2.17
CHD4-213ENST00000545584 PAK3O75914 559 aaPredicted RBP28.6■■■□□ 2.17
CHD4-213ENST00000545584 ATAD2Q6PL18 1390 aa28.6■■■□□ 2.17
CHD4-213ENST00000545584 CENPJQ9HC77 1338 aaPredicted RBP28.58■■■□□ 2.17
CHD4-213ENST00000545584 CCDC61Q9Y6R9 512 aa28.57■■■□□ 2.16
CHD4-213ENST00000545584 ABCA3Q99758 1704 aa28.57■■■□□ 2.16
CHD4-213ENST00000545584 ALS2Q96Q42 1657 aa28.55■■■□□ 2.16
CHD4-213ENST00000545584 SRPK2P78362 688 aaKnown RBP28.53■■■□□ 2.16
CHD4-213ENST00000545584 CCDC9Q9Y3X0 531 aaKnown RBP28.53■■■□□ 2.16
CHD4-213ENST00000545584 RALGAPBQ86X10 1494 aa28.53■■■□□ 2.16
CHD4-213ENST00000545584 NWD2Q9ULI1 1742 aa28.52■■■□□ 2.16
CHD4-213ENST00000545584 FAM83GA6ND36 823 aa28.52■■■□□ 2.16
CHD4-213ENST00000545584 VPS72Q15906 364 aa28.52■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms