RNA–Protein interactions for RNA: ENST00000545083.1

CHD4-212, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 3

Gene CHD4, Length 511 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-212ENST00000545083 ITGAEP38570 1179 aa14.46□□□□□ -0.09
CHD4-212ENST00000545083 PRAG1Q86YV5 1406 aa14.46□□□□□ -0.09
CHD4-212ENST00000545083 PXDNQ92626 1479 aa14.45□□□□□ -0.1
CHD4-212ENST00000545083 XPCQ01831 940 aaPredicted RBP14.45□□□□□ -0.1
CHD4-212ENST00000545083 DEFB132Q7Z7B7 95 aa14.44□□□□□ -0.1
CHD4-212ENST00000545083 NPHP3Q7Z494 1330 aa14.43□□□□□ -0.1
CHD4-212ENST00000545083 GLI3P10071 1580 aa14.43□□□□□ -0.1
CHD4-212ENST00000545083 BLMP54132 1417 aaPredicted RBP14.43□□□□□ -0.1
CHD4-212ENST00000545083 ESCO1Q5FWF5 840 aa14.43□□□□□ -0.1
CHD4-212ENST00000545083 RALGAPBQ86X10 1494 aa14.43□□□□□ -0.1
CHD4-212ENST00000545083 HFM1A2PYH4 1435 aa14.42□□□□□ -0.1
CHD4-212ENST00000545083 FOXO3O43524 673 aa14.42□□□□□ -0.1
CHD4-212ENST00000545083 MARF1Q9Y4F3 1742 aaKnown RBP14.41□□□□□ -0.1
CHD4-212ENST00000545083 SLIT2O94813 1529 aa14.41□□□□□ -0.1
CHD4-212ENST00000545083 CDC42BPGQ6DT37 1551 aa14.4□□□□□ -0.1
CHD4-212ENST00000545083 VGFO15240 615 aaPredicted RBP14.4□□□□□ -0.1
CHD4-212ENST00000545083 UNC5CLQ8IV45 518 aa14.4□□□□□ -0.1
CHD4-212ENST00000545083 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.39□□□□□ -0.11
CHD4-212ENST00000545083 NUTM2FA1L443 756 aa14.38□□□□□ -0.11
CHD4-212ENST00000545083 KIF1BO60333 1816 aa14.38□□□□□ -0.11
CHD4-212ENST00000545083 BRWD3Q6RI45 1802 aa14.37□□□□□ -0.11
CHD4-212ENST00000545083 SEPT12Q8IYM1 358 aa14.37□□□□□ -0.11
CHD4-212ENST00000545083 NAIPQ13075 1403 aa14.37□□□□□ -0.11
CHD4-212ENST00000545083 LRP5O75197 1615 aa14.37□□□□□ -0.11
CHD4-212ENST00000545083 WAPLQ7Z5K2 1190 aa14.35□□□□□ -0.11
CHD4-212ENST00000545083 SPATA31A3Q5VYP0 1347 aa14.35□□□□□ -0.11
CHD4-212ENST00000545083 LRPPRCP42704 1394 aaKnown RBP14.34□□□□□ -0.11
CHD4-212ENST00000545083 PSDA5PKW4 1024 aaPredicted RBP14.34□□□□□ -0.11
CHD4-212ENST00000545083 RPGRIP1LQ68CZ1 1315 aa14.34□□□□□ -0.11
CHD4-212ENST00000545083 USP32Q8NFA0 1604 aa14.33□□□□□ -0.11
CHD4-212ENST00000545083 SF3B2Q13435 895 aaKnown RBP14.33□□□□□ -0.12
CHD4-212ENST00000545083 VPS72Q15906 364 aa14.33□□□□□ -0.12
CHD4-212ENST00000545083 PLEKHH1Q9ULM0 1364 aa14.33□□□□□ -0.12
CHD4-212ENST00000545083 ONECUT3O60422 494 aaPredicted RBP14.32□□□□□ -0.12
CHD4-212ENST00000545083 CABLES1Q8TDN4 633 aa14.32□□□□□ -0.12
CHD4-212ENST00000545083 STK26Q9P289 416 aa14.32□□□□□ -0.12
CHD4-212ENST00000545083 PPLO60437 1756 aa14.32□□□□□ -0.12
CHD4-212ENST00000545083 HRCP23327 699 aa14.31□□□□□ -0.12
CHD4-212ENST00000545083 KRT27Q7Z3Y8 459 aa14.31□□□□□ -0.12
CHD4-212ENST00000545083 ADGRF5Q8IZF2 1346 aa14.31□□□□□ -0.12
CHD4-212ENST00000545083 TECPR2O15040 1411 aa14.31□□□□□ -0.12
CHD4-212ENST00000545083 KRT28Q7Z3Y7 464 aa14.3□□□□□ -0.12
CHD4-212ENST00000545083 PPARGC1BQ86YN6 1023 aaKnown RBP14.3□□□□□ -0.12
CHD4-212ENST00000545083 CCDC144AA2RUR9 1427 aa14.3□□□□□ -0.12
CHD4-212ENST00000545083 PLEKHG5O94827 1062 aa14.29□□□□□ -0.12
CHD4-212ENST00000545083 TNS3Q68CZ2 1445 aa14.28□□□□□ -0.12
CHD4-212ENST00000545083 TMEM132EQ6IEE7 984 aa14.28□□□□□ -0.12
CHD4-212ENST00000545083 FMN2Q9NZ56 1722 aa14.28□□□□□ -0.12
CHD4-212ENST00000545083 CCDC9Q9Y3X0 531 aaKnown RBP14.28□□□□□ -0.12
CHD4-212ENST00000545083 PLCH1Q4KWH8 1693 aa14.27□□□□□ -0.12
CHD4-212ENST00000545083 ABCC11Q96J66 1382 aa14.27□□□□□ -0.12
CHD4-212ENST00000545083 BAG6P46379 1132 aa14.27□□□□□ -0.13
CHD4-212ENST00000545083 HAP1P54257 671 aaPredicted RBP14.27□□□□□ -0.13
CHD4-212ENST00000545083 KIF1AQ12756 1690 aa14.26□□□□□ -0.13
CHD4-212ENST00000545083 RRBP1Q9P2E9 1410 aaKnown RBP14.26□□□□□ -0.13
CHD4-212ENST00000545083 NWD2Q9ULI1 1742 aa14.25□□□□□ -0.13
CHD4-212ENST00000545083 FAM83GA6ND36 823 aa14.25□□□□□ -0.13
CHD4-212ENST00000545083 EN1Q05925 392 aaPredicted RBP14.25□□□□□ -0.13
CHD4-212ENST00000545083 A0A0G2JS52 829 aa14.24□□□□□ -0.13
CHD4-212ENST00000545083 MYT1Q01538 1121 aa14.24□□□□□ -0.13
CHD4-212ENST00000545083 FAM98CQ17RN3 349 aaKnown RBP14.24□□□□□ -0.13
CHD4-212ENST00000545083 FAM182BQ5T319 152 aa14.24□□□□□ -0.13
CHD4-212ENST00000545083 SLC4A1APQ9BWU0 796 aaKnown RBP14.24□□□□□ -0.13
CHD4-212ENST00000545083 PHF8Q9UPP1 1060 aa14.24□□□□□ -0.13
CHD4-212ENST00000545083 ABCA3Q99758 1704 aa14.24□□□□□ -0.13
CHD4-212ENST00000545083 R3HDM1Q15032 1099 aaKnown RBP14.23□□□□□ -0.13
CHD4-212ENST00000545083 KNDC1Q76NI1 1749 aa14.23□□□□□ -0.13
CHD4-212ENST00000545083 SBNO1A3KN83 1393 aa14.22□□□□□ -0.13
CHD4-212ENST00000545083 RGL3Q3MIN7 710 aa14.22□□□□□ -0.13
CHD4-212ENST00000545083 LMOD2Q6P5Q4 547 aa14.22□□□□□ -0.13
CHD4-212ENST00000545083 SPATA31E1Q6ZUB1 1445 aa14.22□□□□□ -0.13
CHD4-212ENST00000545083 YTHDC2Q9H6S0 1430 aaKnown RBP14.22□□□□□ -0.13
CHD4-212ENST00000545083 NRXN1Q9ULB1 1477 aa14.21□□□□□ -0.13
CHD4-212ENST00000545083 PSME1Q06323 249 aa14.21□□□□□ -0.13
CHD4-212ENST00000545083 PIK3C2GO75747 1445 aa14.21□□□□□ -0.13
CHD4-212ENST00000545083 RGPD8O14715 1765 aaPredicted RBP14.21□□□□□ -0.13
CHD4-212ENST00000545083 NRAPQ86VF7 1730 aa14.21□□□□□ -0.14
CHD4-212ENST00000545083 BTG4Q9NY30 223 aa14.2□□□□□ -0.14
CHD4-212ENST00000545083 ARHGEF10O15013 1369 aa14.2□□□□□ -0.14
CHD4-212ENST00000545083 ANKRD30BQ9BXX2 1392 aa14.19□□□□□ -0.14
CHD4-212ENST00000545083 IFT172Q9UG01 1749 aa14.18□□□□□ -0.14
CHD4-212ENST00000545083 DISP2A7MBM2 1401 aa14.18□□□□□ -0.14
CHD4-212ENST00000545083 EZH2Q15910 746 aaKnown RBP14.18□□□□□ -0.14
CHD4-212ENST00000545083 PMFBP1Q8TBY8 1022 aa14.18□□□□□ -0.14
CHD4-212ENST00000545083 SIRT1Q96EB6 747 aa14.18□□□□□ -0.14
CHD4-212ENST00000545083 SAFB2Q14151 953 aaKnown RBP eCLIP14.17□□□□□ -0.14
CHD4-212ENST00000545083 RGPD1P0DJD0 1748 aa14.17□□□□□ -0.14
CHD4-212ENST00000545083 SPATA31A5Q5VU36 1347 aa14.16□□□□□ -0.14
CHD4-212ENST00000545083 SPATA31A7Q8IWB4 1347 aa14.16□□□□□ -0.14
CHD4-212ENST00000545083 TNS1Q9HBL0 1735 aaKnown RBP14.15□□□□□ -0.14
CHD4-212ENST00000545083 THSD7AQ9UPZ6 1657 aa14.15□□□□□ -0.14
CHD4-212ENST00000545083 CAMKK2Q96RR4 588 aa14.15□□□□□ -0.14
CHD4-212ENST00000545083 PRAM1Q96QH2 718 aa14.14□□□□□ -0.15
CHD4-212ENST00000545083 C14orf93Q9H972 538 aaKnown RBP14.14□□□□□ -0.15
CHD4-212ENST00000545083 COL14A1Q05707 1796 aaKnown RBP14.14□□□□□ -0.15
CHD4-212ENST00000545083 TRPM3Q9HCF6 1732 aaPredicted RBP14.13□□□□□ -0.15
CHD4-212ENST00000545083 CFAP70Q5T0N1 1121 aa14.13□□□□□ -0.15
CHD4-212ENST00000545083 ANKARQ7Z5J8 1434 aa14.13□□□□□ -0.15
CHD4-212ENST00000545083 TRIM37O94972 964 aa14.12□□□□□ -0.15
CHD4-212ENST00000545083 YY1P25490 414 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms