RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-223ENST00000544669 TRAK1Q9UPV9 953 aa16.9■□□□□ 0.3
CPSF7-223ENST00000544669 FRMPD1Q5SYB0 1578 aa16.9■□□□□ 0.3
CPSF7-223ENST00000544669 NSD3Q9BZ95 1437 aa16.9■□□□□ 0.3
CPSF7-223ENST00000544669 ZC3H13Q5T200 1668 aaKnown RBP16.9■□□□□ 0.3
CPSF7-223ENST00000544669 ANKRD36BQ8N2N9 1353 aa16.88■□□□□ 0.29
CPSF7-223ENST00000544669 FAM161AQ3B820 660 aa16.88■□□□□ 0.29
CPSF7-223ENST00000544669 CT47B1P0C2W7 299 aaPredicted RBP16.87■□□□□ 0.29
CPSF7-223ENST00000544669 WWC1Q8IX03 1113 aa16.87■□□□□ 0.29
CPSF7-223ENST00000544669 CCDC146Q8IYE0 955 aa16.87■□□□□ 0.29
CPSF7-223ENST00000544669 PAK3O75914 559 aaPredicted RBP16.86■□□□□ 0.29
CPSF7-223ENST00000544669 CAMSAP1Q5T5Y3 1602 aa16.86■□□□□ 0.29
CPSF7-223ENST00000544669 PPP6R1Q9UPN7 881 aa16.86■□□□□ 0.29
CPSF7-223ENST00000544669 QRICH2Q9H0J4 1663 aa16.86■□□□□ 0.29
CPSF7-223ENST00000544669 PIK3C2BO00750 1634 aa16.86■□□□□ 0.29
CPSF7-223ENST00000544669 PNNQ9H307 717 aaKnown RBP16.85■□□□□ 0.29
CPSF7-223ENST00000544669 MYH16Q9H6N6 1097 aa16.85■□□□□ 0.29
CPSF7-223ENST00000544669 DAXXQ9UER7 740 aaPredicted RBP16.85■□□□□ 0.29
CPSF7-223ENST00000544669 C20orf194Q5TEA3 1177 aa16.84■□□□□ 0.29
CPSF7-223ENST00000544669 CANXP27824 592 aaKnown RBP16.84■□□□□ 0.29
CPSF7-223ENST00000544669 PHF23Q9BUL5 403 aaPredicted RBP16.84■□□□□ 0.29
CPSF7-223ENST00000544669 SLC12A5Q9H2X9 1139 aa16.84■□□□□ 0.29
CPSF7-223ENST00000544669 MAPK8IP3Q9UPT6 1336 aa16.83■□□□□ 0.29
CPSF7-223ENST00000544669 NPM2Q86SE8 214 aaKnown RBP16.83■□□□□ 0.28
CPSF7-223ENST00000544669 ZMYM3Q14202 1370 aa16.82■□□□□ 0.28
CPSF7-223ENST00000544669 ATAD2Q6PL18 1390 aa16.82■□□□□ 0.28
CPSF7-223ENST00000544669 PMFBP1Q8TBY8 1022 aa16.82■□□□□ 0.28
CPSF7-223ENST00000544669 TERF2IPQ9NYB0 399 aa16.82■□□□□ 0.28
CPSF7-223ENST00000544669 GLI2P10070 1586 aa16.81■□□□□ 0.28
CPSF7-223ENST00000544669 NEXMIFQ5QGS0 1516 aa16.81■□□□□ 0.28
CPSF7-223ENST00000544669 DIP2CQ9Y2E4 1556 aa16.8■□□□□ 0.28
CPSF7-223ENST00000544669 DEKP35659 375 aaKnown RBP16.8■□□□□ 0.28
CPSF7-223ENST00000544669 MTHFSP49914 203 aa16.8■□□□□ 0.28
CPSF7-223ENST00000544669 TCP11L2Q8N4U5 519 aa16.8■□□□□ 0.28
CPSF7-223ENST00000544669 MED14O60244 1454 aa16.79■□□□□ 0.28
CPSF7-223ENST00000544669 TMEM132EQ6IEE7 984 aa16.79■□□□□ 0.28
CPSF7-223ENST00000544669 CLUAP1Q96AJ1 413 aa16.79■□□□□ 0.28
CPSF7-223ENST00000544669 NBR1Q14596 966 aa16.77■□□□□ 0.28
CPSF7-223ENST00000544669 IQSEC2Q5JU85 1478 aa16.77■□□□□ 0.28
CPSF7-223ENST00000544669 SPINK5Q9NQ38 1064 aaPredicted RBP16.77■□□□□ 0.27
CPSF7-223ENST00000544669 ABCC11Q96J66 1382 aa16.77■□□□□ 0.27
CPSF7-223ENST00000544669 BCAR3O75815 825 aa16.76■□□□□ 0.27
CPSF7-223ENST00000544669 IDI1Q13907 227 aa16.76■□□□□ 0.27
CPSF7-223ENST00000544669 RAPGEF3O95398 923 aa16.75■□□□□ 0.27
CPSF7-223ENST00000544669 RARSP54136 660 aaKnown RBP16.75■□□□□ 0.27
CPSF7-223ENST00000544669 IL16Q14005 1332 aa16.75■□□□□ 0.27
CPSF7-223ENST00000544669 SHPRHQ149N8 1683 aa16.75■□□□□ 0.27
CPSF7-223ENST00000544669 ARHGEF28Q8N1W1 1705 aaKnown RBP16.74■□□□□ 0.27
CPSF7-223ENST00000544669 HDGFL2Q7Z4V5 671 aaPredicted RBP16.74■□□□□ 0.27
CPSF7-223ENST00000544669 TULP4Q9NRJ4 1543 aa16.73■□□□□ 0.27
CPSF7-223ENST00000544669 U2AF1L5P0DN76 240 aaPredicted RBP16.73■□□□□ 0.27
CPSF7-223ENST00000544669 SRPK2P78362 688 aaKnown RBP16.73■□□□□ 0.27
CPSF7-223ENST00000544669 U2AF1Q01081 240 aaKnown RBP eCLIP16.73■□□□□ 0.27
CPSF7-223ENST00000544669 BCL11AQ9H165 835 aa16.73■□□□□ 0.27
CPSF7-223ENST00000544669 RWDD1Q9H446 243 aaPredicted RBP16.73■□□□□ 0.27
CPSF7-223ENST00000544669 C8orf34Q49A92 452 aa16.72■□□□□ 0.27
CPSF7-223ENST00000544669 POGKQ9P215 609 aa16.71■□□□□ 0.27
CPSF7-223ENST00000544669 RICTORQ6R327 1708 aa16.71■□□□□ 0.27
CPSF7-223ENST00000544669 TNNT2P45379 298 aaPredicted RBP16.7■□□□□ 0.26
CPSF7-223ENST00000544669 NEFMP07197 916 aa16.69■□□□□ 0.26
CPSF7-223ENST00000544669 ZNF428Q96B54 188 aa16.69■□□□□ 0.26
CPSF7-223ENST00000544669 UPF2Q9HAU5 1272 aaKnown RBP16.69■□□□□ 0.26
CPSF7-223ENST00000544669 CABP2Q9NPB3 220 aa16.69■□□□□ 0.26
CPSF7-223ENST00000544669 SIGLEC1Q9BZZ2 1709 aa16.69■□□□□ 0.26
CPSF7-223ENST00000544669 YTHDC2Q9H6S0 1430 aaKnown RBP16.68■□□□□ 0.26
CPSF7-223ENST00000544669 ZKSCAN2Q63HK3 967 aa16.68■□□□□ 0.26
CPSF7-223ENST00000544669 REREQ9P2R6 1566 aa16.68■□□□□ 0.26
CPSF7-223ENST00000544669 RGS3P49796 1198 aa16.68■□□□□ 0.26
CPSF7-223ENST00000544669 NEUROD2Q15784 382 aa16.68■□□□□ 0.26
CPSF7-223ENST00000544669 FRAT1Q92837 279 aaPredicted RBP16.68■□□□□ 0.26
CPSF7-223ENST00000544669 CHMP4BQ9H444 224 aaKnown RBP16.68■□□□□ 0.26
CPSF7-223ENST00000544669 COG6Q9Y2V7 657 aa16.68■□□□□ 0.26
CPSF7-223ENST00000544669 TMEM131LA2VDJ0 1609 aa16.67■□□□□ 0.26
CPSF7-223ENST00000544669 ADGRB2O60241 1585 aa16.67■□□□□ 0.26
CPSF7-223ENST00000544669 BECN1Q14457 450 aa16.67■□□□□ 0.26
CPSF7-223ENST00000544669 DMRT2Q9Y5R5 561 aa16.67■□□□□ 0.26
CPSF7-223ENST00000544669 A0A1W2PP64 1363 aa16.67■□□□□ 0.26
CPSF7-223ENST00000544669 AGLP35573 1532 aa16.66■□□□□ 0.26
CPSF7-223ENST00000544669 CALD1Q05682 793 aaKnown RBP16.66■□□□□ 0.26
CPSF7-223ENST00000544669 STAG3Q9UJ98 1225 aa16.66■□□□□ 0.26
CPSF7-223ENST00000544669 PTPRMP28827 1452 aa16.66■□□□□ 0.26
CPSF7-223ENST00000544669 CLTCQ00610 1675 aaKnown RBP16.66■□□□□ 0.26
CPSF7-223ENST00000544669 PREX1Q8TCU6 1659 aa16.66■□□□□ 0.26
CPSF7-223ENST00000544669 IPO8O15397 1037 aaKnown RBP16.66■□□□□ 0.26
CPSF7-223ENST00000544669 HDGFP51858 240 aaKnown RBP16.66■□□□□ 0.26
CPSF7-223ENST00000544669 DLC1Q96QB1 1528 aa16.65■□□□□ 0.26
CPSF7-223ENST00000544669 DIAPH1O60610 1272 aaKnown RBP16.64■□□□□ 0.25
CPSF7-223ENST00000544669 FCHSD2O94868 740 aa16.64■□□□□ 0.25
CPSF7-223ENST00000544669 IGHDP01880 384 aa16.64■□□□□ 0.25
CPSF7-223ENST00000544669 FTSJ3Q8IY81 847 aaKnown RBP16.64■□□□□ 0.25
CPSF7-223ENST00000544669 PANK1Q8TE04 598 aa16.64■□□□□ 0.25
CPSF7-223ENST00000544669 TMPOP42166 694 aaKnown RBP16.63■□□□□ 0.25
CPSF7-223ENST00000544669 MVPQ14764 893 aaKnown RBP16.63■□□□□ 0.25
CPSF7-223ENST00000544669 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.63■□□□□ 0.25
CPSF7-223ENST00000544669 PRAM1Q96QH2 718 aa16.63■□□□□ 0.25
CPSF7-223ENST00000544669 RRP7AQ9Y3A4 280 aaKnown RBP16.63■□□□□ 0.25
CPSF7-223ENST00000544669 CFAP65Q6ZU64 1925 aaKnown RBP16.63■□□□□ 0.25
CPSF7-223ENST00000544669 PNPLA6Q8IY17 1366 aa16.63■□□□□ 0.25
CPSF7-223ENST00000544669 FYB1O15117 783 aa16.63■□□□□ 0.25
CPSF7-223ENST00000544669 DZIP1LQ8IYY4 767 aaKnown RBP16.63■□□□□ 0.25
CPSF7-223ENST00000544669 PLEKHF1Q96S99 279 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms