RNA–Protein interactions for RNA: ENST00000544513.1

SEMA4D-224, Transcript of semaphorin 4D, humanhuman

TSL 5

Gene SEMA4D, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-224ENST00000544513 RGL3Q3MIN7 710 aa20.74■□□□□ 0.91
SEMA4D-224ENST00000544513 IFT172Q9UG01 1749 aa20.74■□□□□ 0.91
SEMA4D-224ENST00000544513 LRPPRCP42704 1394 aaKnown RBP20.73■□□□□ 0.91
SEMA4D-224ENST00000544513 ABCC11Q96J66 1382 aa20.72■□□□□ 0.91
SEMA4D-224ENST00000544513 PIK3C2GO75747 1445 aa20.72■□□□□ 0.91
SEMA4D-224ENST00000544513 QTRT2Q9H974 415 aaKnown RBP20.72■□□□□ 0.91
SEMA4D-224ENST00000544513 RBM6P78332 1123 aaKnown RBP20.7■□□□□ 0.9
SEMA4D-224ENST00000544513 ACIN1Q9UKV3 1341 aaKnown RBP20.7■□□□□ 0.9
SEMA4D-224ENST00000544513 COL22A1Q8NFW1 1626 aaPredicted RBP20.69■□□□□ 0.9
SEMA4D-224ENST00000544513 ADAMTS2O95450 1211 aa20.69■□□□□ 0.9
SEMA4D-224ENST00000544513 WAPLQ7Z5K2 1190 aa20.69■□□□□ 0.9
SEMA4D-224ENST00000544513 NGLY1Q96IV0 654 aa20.69■□□□□ 0.9
SEMA4D-224ENST00000544513 PXDNQ92626 1479 aa20.69■□□□□ 0.9
SEMA4D-224ENST00000544513 ESCO1Q5FWF5 840 aa20.68■□□□□ 0.9
SEMA4D-224ENST00000544513 TMEM132EQ6IEE7 984 aa20.68■□□□□ 0.9
SEMA4D-224ENST00000544513 STK26Q9P289 416 aa20.68■□□□□ 0.9
SEMA4D-224ENST00000544513 NPHP3Q7Z494 1330 aa20.68■□□□□ 0.9
SEMA4D-224ENST00000544513 RGS12O14924 1447 aa20.67■□□□□ 0.9
SEMA4D-224ENST00000544513 KNDC1Q76NI1 1749 aa20.67■□□□□ 0.9
SEMA4D-224ENST00000544513 FNBP4Q8N3X1 1017 aaPredicted RBP20.66■□□□□ 0.9
SEMA4D-224ENST00000544513 PLEKHH1Q9ULM0 1364 aa20.66■□□□□ 0.9
SEMA4D-224ENST00000544513 YTHDC2Q9H6S0 1430 aaKnown RBP20.66■□□□□ 0.9
SEMA4D-224ENST00000544513 MYOM2P54296 1465 aa20.66■□□□□ 0.9
SEMA4D-224ENST00000544513 NRXN1Q9ULB1 1477 aa20.66■□□□□ 0.9
SEMA4D-224ENST00000544513 SIRT1Q96EB6 747 aa20.65■□□□□ 0.9
SEMA4D-224ENST00000544513 FOXO3O43524 673 aa20.64■□□□□ 0.89
SEMA4D-224ENST00000544513 C14orf93Q9H972 538 aaKnown RBP20.64■□□□□ 0.89
SEMA4D-224ENST00000544513 USP21Q9UK80 565 aa20.62■□□□□ 0.89
SEMA4D-224ENST00000544513 FMN2Q9NZ56 1722 aa20.61■□□□□ 0.89
SEMA4D-224ENST00000544513 TRPC5Q9UL62 973 aaPredicted RBP20.6■□□□□ 0.89
SEMA4D-224ENST00000544513 ATRNO75882 1429 aa20.6■□□□□ 0.89
SEMA4D-224ENST00000544513 NUTM2FA1L443 756 aa20.59■□□□□ 0.89
SEMA4D-224ENST00000544513 XPCQ01831 940 aaPredicted RBP20.59■□□□□ 0.89
SEMA4D-224ENST00000544513 EP400Q96L91 3159 aa20.59■□□□□ 0.89
SEMA4D-224ENST00000544513 SRCAPQ6ZRS2 3230 aa20.58■□□□□ 0.88
SEMA4D-224ENST00000544513 BCL9LQ86UU0 1499 aa20.57■□□□□ 0.88
SEMA4D-224ENST00000544513 CFAP70Q5T0N1 1121 aa20.57■□□□□ 0.88
SEMA4D-224ENST00000544513 DHX57Q6P158 1386 aaKnown RBP20.56■□□□□ 0.88
SEMA4D-224ENST00000544513 RAB3GAP2Q9H2M9 1393 aa20.56■□□□□ 0.88
SEMA4D-224ENST00000544513 SPATA31A3Q5VYP0 1347 aa20.55■□□□□ 0.88
SEMA4D-224ENST00000544513 KIF1AQ12756 1690 aa20.55■□□□□ 0.88
SEMA4D-224ENST00000544513 MARF1Q9Y4F3 1742 aaKnown RBP20.55■□□□□ 0.88
SEMA4D-224ENST00000544513 DLC1Q96QB1 1528 aa20.52■□□□□ 0.87
SEMA4D-224ENST00000544513 ATAD2Q6PL18 1390 aa20.51■□□□□ 0.87
SEMA4D-224ENST00000544513 KRT28Q7Z3Y7 464 aa20.51■□□□□ 0.87
SEMA4D-224ENST00000544513 PRAM1Q96QH2 718 aa20.51■□□□□ 0.87
SEMA4D-224ENST00000544513 PHF8Q9UPP1 1060 aa20.5■□□□□ 0.87
SEMA4D-224ENST00000544513 ADGRB1O14514 1584 aa20.5■□□□□ 0.87
SEMA4D-224ENST00000544513 RGPD8O14715 1765 aaPredicted RBP20.49■□□□□ 0.87
SEMA4D-224ENST00000544513 SLIT2O94813 1529 aa20.48■□□□□ 0.87
SEMA4D-224ENST00000544513 GJD4Q96KN9 370 aaPredicted RBP20.48■□□□□ 0.87
SEMA4D-224ENST00000544513 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.47■□□□□ 0.87
SEMA4D-224ENST00000544513 TNS3Q68CZ2 1445 aa20.47■□□□□ 0.87
SEMA4D-224ENST00000544513 SBNO1A3KN83 1393 aa20.46■□□□□ 0.87
SEMA4D-224ENST00000544513 ANKARQ7Z5J8 1434 aa20.46■□□□□ 0.87
SEMA4D-224ENST00000544513 PSME1Q06323 249 aa20.46■□□□□ 0.87
SEMA4D-224ENST00000544513 SAFB2Q14151 953 aaKnown RBP eCLIP20.46■□□□□ 0.87
SEMA4D-224ENST00000544513 UNC5CLQ8IV45 518 aa20.46■□□□□ 0.87
SEMA4D-224ENST00000544513 ADGRB2O60241 1585 aa20.46■□□□□ 0.87
SEMA4D-224ENST00000544513 HRCP23327 699 aa20.45■□□□□ 0.86
SEMA4D-224ENST00000544513 USP32Q8NFA0 1604 aa20.45■□□□□ 0.86
SEMA4D-224ENST00000544513 POGKQ9P215 609 aa20.44■□□□□ 0.86
SEMA4D-224ENST00000544513 STAC3Q96MF2 364 aa20.43■□□□□ 0.86
SEMA4D-224ENST00000544513 RALGAPBQ86X10 1494 aa20.43■□□□□ 0.86
SEMA4D-224ENST00000544513 GLI3P10071 1580 aa20.42■□□□□ 0.86
SEMA4D-224ENST00000544513 CABLES1Q8TDN4 633 aa20.41■□□□□ 0.86
SEMA4D-224ENST00000544513 ARHGEF10O15013 1369 aa20.41■□□□□ 0.86
SEMA4D-224ENST00000544513 CCDC125Q86Z20 511 aa20.4■□□□□ 0.86
SEMA4D-224ENST00000544513 DCAF11Q8TEB1 546 aa20.4■□□□□ 0.86
SEMA4D-224ENST00000544513 TRAK1Q9UPV9 953 aa20.4■□□□□ 0.86
SEMA4D-224ENST00000544513 KDM2AQ9Y2K7 1162 aa20.39■□□□□ 0.85
SEMA4D-224ENST00000544513 PRR36Q9H6K5 1346 aa20.38■□□□□ 0.85
SEMA4D-224ENST00000544513 PMFBP1Q8TBY8 1022 aa20.38■□□□□ 0.85
SEMA4D-224ENST00000544513 ABCA3Q99758 1704 aa20.38■□□□□ 0.85
SEMA4D-224ENST00000544513 VPS72Q15906 364 aa20.37■□□□□ 0.85
SEMA4D-224ENST00000544513 HIRIP3Q9BW71 556 aaPredicted RBP20.37■□□□□ 0.85
SEMA4D-224ENST00000544513 TRPM3Q9HCF6 1732 aaPredicted RBP20.36■□□□□ 0.85
SEMA4D-224ENST00000544513 EIF3AQ14152 1382 aaKnown RBP20.36■□□□□ 0.85
SEMA4D-224ENST00000544513 MINK1Q8N4C8 1332 aaPredicted RBP20.36■□□□□ 0.85
SEMA4D-224ENST00000544513 TULP4Q9NRJ4 1543 aa20.36■□□□□ 0.85
SEMA4D-224ENST00000544513 NWD2Q9ULI1 1742 aa20.36■□□□□ 0.85
SEMA4D-224ENST00000544513 FAM83GA6ND36 823 aa20.35■□□□□ 0.85
SEMA4D-224ENST00000544513 WASLO00401 505 aaPredicted RBP20.35■□□□□ 0.85
SEMA4D-224ENST00000544513 ONECUT3O60422 494 aaPredicted RBP20.35■□□□□ 0.85
SEMA4D-224ENST00000544513 HAP1P54257 671 aaPredicted RBP20.35■□□□□ 0.85
SEMA4D-224ENST00000544513 LMOD2Q6P5Q4 547 aa20.34■□□□□ 0.85
SEMA4D-224ENST00000544513 PLCH1Q4KWH8 1693 aa20.34■□□□□ 0.85
SEMA4D-224ENST00000544513 ALS2Q96Q42 1657 aa20.32■□□□□ 0.84
SEMA4D-224ENST00000544513 GPRASP1Q5JY77 1395 aa20.32■□□□□ 0.84
SEMA4D-224ENST00000544513 SEPT12Q8IYM1 358 aa20.31■□□□□ 0.84
SEMA4D-224ENST00000544513 BRWD3Q6RI45 1802 aa20.31■□□□□ 0.84
SEMA4D-224ENST00000544513 PLEKHG5O94827 1062 aa20.3■□□□□ 0.84
SEMA4D-224ENST00000544513 BLMP54132 1417 aaPredicted RBP20.29■□□□□ 0.84
SEMA4D-224ENST00000544513 ARHGEF28Q8N1W1 1705 aaKnown RBP20.29■□□□□ 0.84
SEMA4D-224ENST00000544513 ZRANB1Q9UGI0 708 aa20.28■□□□□ 0.84
SEMA4D-224ENST00000544513 ATP7BP35670 1465 aa20.27■□□□□ 0.84
SEMA4D-224ENST00000544513 NGDNQ8NEJ9 315 aaKnown RBP20.27■□□□□ 0.84
SEMA4D-224ENST00000544513 NRAPQ86VF7 1730 aa20.27■□□□□ 0.83
SEMA4D-224ENST00000544513 NUDT16Q96DE0 195 aaKnown RBP20.26■□□□□ 0.83
SEMA4D-224ENST00000544513 CRYBG1Q9Y4K1 1723 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms