RNA–Protein interactions for RNA: ENST00000544454.5

LTBR-213, Transcript of lymphotoxin beta receptor, humanhuman

TSL 5

Gene LTBR, Length 632 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-213ENST00000544454 KNDC1Q76NI1 1749 aa19.6■□□□□ 0.73
LTBR-213ENST00000544454 KIAA1210Q9ULL0 1709 aa19.6■□□□□ 0.73
LTBR-213ENST00000544454 NBPF8Q3BBV2 869 aa19.6■□□□□ 0.73
LTBR-213ENST00000544454 HSPA1LP34931 641 aa19.58■□□□□ 0.72
LTBR-213ENST00000544454 SAFB2Q14151 953 aaKnown RBP eCLIP19.57■□□□□ 0.72
LTBR-213ENST00000544454 MST1RQ04912 1400 aa19.57■□□□□ 0.72
LTBR-213ENST00000544454 BRINP3Q76B58 766 aa19.55■□□□□ 0.72
LTBR-213ENST00000544454 NALCNQ8IZF0 1738 aa19.55■□□□□ 0.72
LTBR-213ENST00000544454 ROCK2O75116 1388 aaKnown RBP19.55■□□□□ 0.72
LTBR-213ENST00000544454 C1orf167Q5SNV9 1468 aa19.53■□□□□ 0.72
LTBR-213ENST00000544454 GPRASP1Q5JY77 1395 aa19.52■□□□□ 0.72
LTBR-213ENST00000544454 CDC42BPGQ6DT37 1551 aa19.52■□□□□ 0.71
LTBR-213ENST00000544454 TRPM1Q7Z4N2 1603 aa19.51■□□□□ 0.71
LTBR-213ENST00000544454 MINK1Q8N4C8 1332 aaPredicted RBP19.51■□□□□ 0.71
LTBR-213ENST00000544454 ROBO1Q9Y6N7 1651 aa19.5■□□□□ 0.71
LTBR-213ENST00000544454 ORAI2Q96SN7 254 aa19.49■□□□□ 0.71
LTBR-213ENST00000544454 HIRIP3Q9BW71 556 aaPredicted RBP19.49■□□□□ 0.71
LTBR-213ENST00000544454 CARD11Q9BXL7 1154 aa19.49■□□□□ 0.71
LTBR-213ENST00000544454 CENPJQ9HC77 1338 aaPredicted RBP19.49■□□□□ 0.71
LTBR-213ENST00000544454 NUTM2FA1L443 756 aa19.48■□□□□ 0.71
LTBR-213ENST00000544454 WASLO00401 505 aaPredicted RBP19.48■□□□□ 0.71
LTBR-213ENST00000544454 ESCO1Q5FWF5 840 aa19.48■□□□□ 0.71
LTBR-213ENST00000544454 RALGAPBQ86X10 1494 aa19.48■□□□□ 0.71
LTBR-213ENST00000544454 ARHGEF28Q8N1W1 1705 aaKnown RBP19.45■□□□□ 0.7
LTBR-213ENST00000544454 EIF3AQ14152 1382 aaKnown RBP19.44■□□□□ 0.7
LTBR-213ENST00000544454 ADGRB2O60241 1585 aa19.44■□□□□ 0.7
LTBR-213ENST00000544454 CDK19Q9BWU1 502 aa19.43■□□□□ 0.7
LTBR-213ENST00000544454 ANKARQ7Z5J8 1434 aa19.42■□□□□ 0.7
LTBR-213ENST00000544454 AHDC1Q5TGY3 1603 aaPredicted RBP19.42■□□□□ 0.7
LTBR-213ENST00000544454 DDX17Q92841 729 aaKnown RBP19.41■□□□□ 0.7
LTBR-213ENST00000544454 PHF8Q9UPP1 1060 aa19.41■□□□□ 0.7
LTBR-213ENST00000544454 FMN2Q9NZ56 1722 aa19.4■□□□□ 0.7
LTBR-213ENST00000544454 FOXO3O43524 673 aa19.4■□□□□ 0.7
LTBR-213ENST00000544454 LRRC59Q96AG4 307 aaKnown RBP19.4■□□□□ 0.7
LTBR-213ENST00000544454 NPHP3Q7Z494 1330 aa19.4■□□□□ 0.7
LTBR-213ENST00000544454 NUDT16Q96DE0 195 aaKnown RBP19.39■□□□□ 0.69
LTBR-213ENST00000544454 SOS2Q07890 1332 aaPredicted RBP19.39■□□□□ 0.69
LTBR-213ENST00000544454 PRR36Q9H6K5 1346 aa19.38■□□□□ 0.69
LTBR-213ENST00000544454 JCADQ9P266 1359 aa19.38■□□□□ 0.69
LTBR-213ENST00000544454 TULP4Q9NRJ4 1543 aa19.37■□□□□ 0.69
LTBR-213ENST00000544454 PHLPP1O60346 1717 aa19.37■□□□□ 0.69
LTBR-213ENST00000544454 EVC2Q86UK5 1308 aa19.36■□□□□ 0.69
LTBR-213ENST00000544454 SRPK2P78362 688 aaKnown RBP19.36■□□□□ 0.69
LTBR-213ENST00000544454 CCDC61Q9Y6R9 512 aa19.36■□□□□ 0.69
LTBR-213ENST00000544454 SBNO2Q9Y2G9 1366 aa19.35■□□□□ 0.69
LTBR-213ENST00000544454 SLC24A1O60721 1099 aa19.35■□□□□ 0.69
LTBR-213ENST00000544454 COL16A1Q07092 1604 aaPredicted RBP19.35■□□□□ 0.69
LTBR-213ENST00000544454 NHSL1Q5SYE7 1610 aa19.34■□□□□ 0.69
LTBR-213ENST00000544454 PMFBP1Q8TBY8 1022 aa19.34■□□□□ 0.69
LTBR-213ENST00000544454 ST20-MTHFSA0A0A6YYL1 179 aa19.33■□□□□ 0.68
LTBR-213ENST00000544454 PSME1Q06323 249 aa19.33■□□□□ 0.68
LTBR-213ENST00000544454 KRT28Q7Z3Y7 464 aa19.33■□□□□ 0.68
LTBR-213ENST00000544454 CABP2Q9NPB3 220 aa19.33■□□□□ 0.68
LTBR-213ENST00000544454 PLEKHG3A1L390 1219 aa19.32■□□□□ 0.68
LTBR-213ENST00000544454 SPATA31A6Q5VVP1 1343 aa19.31■□□□□ 0.68
LTBR-213ENST00000544454 ATP7BP35670 1465 aa19.31■□□□□ 0.68
LTBR-213ENST00000544454 XPCQ01831 940 aaPredicted RBP19.31■□□□□ 0.68
LTBR-213ENST00000544454 NGDNQ8NEJ9 315 aaKnown RBP19.31■□□□□ 0.68
LTBR-213ENST00000544454 USP32Q8NFA0 1604 aa19.31■□□□□ 0.68
LTBR-213ENST00000544454 KIF1AQ12756 1690 aa19.3■□□□□ 0.68
LTBR-213ENST00000544454 QRICH2Q9H0J4 1663 aa19.3■□□□□ 0.68
LTBR-213ENST00000544454 PXDNQ92626 1479 aa19.3■□□□□ 0.68
LTBR-213ENST00000544454 TESK2Q96S53 571 aa19.3■□□□□ 0.68
LTBR-213ENST00000544454 USP47Q96K76 1375 aa19.3■□□□□ 0.68
LTBR-213ENST00000544454 PUS7Q96PZ0 661 aaKnown RBP19.28■□□□□ 0.68
LTBR-213ENST00000544454 SPATA31A3Q5VYP0 1347 aa19.27■□□□□ 0.68
LTBR-213ENST00000544454 PNPLA6Q8IY17 1366 aa19.27■□□□□ 0.68
LTBR-213ENST00000544454 CABP1Q9NZU7 370 aa19.26■□□□□ 0.67
LTBR-213ENST00000544454 SBNO1A3KN83 1393 aa19.26■□□□□ 0.67
LTBR-213ENST00000544454 RGPD8O14715 1765 aaPredicted RBP19.26■□□□□ 0.67
LTBR-213ENST00000544454 ACEP12821 1306 aa19.25■□□□□ 0.67
LTBR-213ENST00000544454 POLR3AO14802 1390 aaPredicted RBP19.25■□□□□ 0.67
LTBR-213ENST00000544454 PPIP5K1Q6PFW1 1433 aa19.25■□□□□ 0.67
LTBR-213ENST00000544454 ATAD2Q6PL18 1390 aa19.24■□□□□ 0.67
LTBR-213ENST00000544454 SHPRHQ149N8 1683 aa19.23■□□□□ 0.67
LTBR-213ENST00000544454 NUTM2BA6NNL0 878 aaPredicted RBP19.22■□□□□ 0.67
LTBR-213ENST00000544454 NUTM2EB1AL46 878 aaPredicted RBP19.22■□□□□ 0.67
LTBR-213ENST00000544454 EIF4G2P78344 907 aaKnown RBP eCLIP19.22■□□□□ 0.67
LTBR-213ENST00000544454 TMF1P82094 1093 aa19.22■□□□□ 0.67
LTBR-213ENST00000544454 NUTM2AQ8IVF1 878 aaPredicted RBP19.22■□□□□ 0.67
LTBR-213ENST00000544454 MED1Q15648 1581 aaPredicted RBP19.21■□□□□ 0.67
LTBR-213ENST00000544454 ZNF692Q9BU19 519 aaPredicted RBP19.21■□□□□ 0.67
LTBR-213ENST00000544454 DISP3Q9P2K9 1392 aa19.2■□□□□ 0.66
LTBR-213ENST00000544454 ITSN1Q15811 1721 aa19.2■□□□□ 0.66
LTBR-213ENST00000544454 TNS3Q68CZ2 1445 aa19.2■□□□□ 0.66
LTBR-213ENST00000544454 ARHGEF10O15013 1369 aa19.19■□□□□ 0.66
LTBR-213ENST00000544454 PAK3O75914 559 aaPredicted RBP19.19■□□□□ 0.66
LTBR-213ENST00000544454 CDCA8Q53HL2 280 aa19.19■□□□□ 0.66
LTBR-213ENST00000544454 LMOD2Q6P5Q4 547 aa19.19■□□□□ 0.66
LTBR-213ENST00000544454 BRD4O60885 1362 aaPredicted RBP19.19■□□□□ 0.66
LTBR-213ENST00000544454 TOPAZ1Q8N9V7 1692 aa19.18■□□□□ 0.66
LTBR-213ENST00000544454 MEX3CQ5U5Q3 659 aaKnown RBP19.18■□□□□ 0.66
LTBR-213ENST00000544454 PHF23Q9BUL5 403 aaPredicted RBP19.18■□□□□ 0.66
LTBR-213ENST00000544454 LRP6O75581 1613 aa19.16■□□□□ 0.66
LTBR-213ENST00000544454 HSPA5P11021 654 aaKnown RBP19.16■□□□□ 0.66
LTBR-213ENST00000544454 TMC1Q8TDI8 760 aa19.16■□□□□ 0.66
LTBR-213ENST00000544454 SLC12A5Q9H2X9 1139 aa19.15■□□□□ 0.66
LTBR-213ENST00000544454 COL22A1Q8NFW1 1626 aaPredicted RBP19.14■□□□□ 0.66
LTBR-213ENST00000544454 ADAMTS2O95450 1211 aa19.14■□□□□ 0.65
LTBR-213ENST00000544454 TERF2IPQ9NYB0 399 aa19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms