RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 KIF3BO15066 747 aa17.78■□□□□ 0.44
VPS33A-208ENST00000543633 IQSEC2Q5JU85 1478 aa17.78■□□□□ 0.44
VPS33A-208ENST00000543633 APAF1O14727 1248 aa17.77■□□□□ 0.44
VPS33A-208ENST00000543633 PPLO60437 1756 aa17.77■□□□□ 0.44
VPS33A-208ENST00000543633 YEATS2Q9ULM3 1422 aa17.77■□□□□ 0.43
VPS33A-208ENST00000543633 QRICH2Q9H0J4 1663 aa17.77■□□□□ 0.43
VPS33A-208ENST00000543633 MAPK8IP3Q9UPT6 1336 aa17.76■□□□□ 0.43
VPS33A-208ENST00000543633 SKAP1Q86WV1 359 aa17.76■□□□□ 0.43
VPS33A-208ENST00000543633 NCBP3Q53F19 620 aaKnown RBP17.76■□□□□ 0.43
VPS33A-208ENST00000543633 NFKBIBQ15653 356 aa17.75■□□□□ 0.43
VPS33A-208ENST00000543633 UGGT1Q9NYU2 1555 aa17.75■□□□□ 0.43
VPS33A-208ENST00000543633 CCDC146Q8IYE0 955 aa17.74■□□□□ 0.43
VPS33A-208ENST00000543633 CENPJQ9HC77 1338 aaPredicted RBP17.73■□□□□ 0.43
VPS33A-208ENST00000543633 SPINK5Q9NQ38 1064 aaPredicted RBP17.73■□□□□ 0.43
VPS33A-208ENST00000543633 GSE1Q14687 1217 aa17.72■□□□□ 0.43
VPS33A-208ENST00000543633 CARD14Q9BXL6 1004 aa17.72■□□□□ 0.43
VPS33A-208ENST00000543633 CFAP70Q5T0N1 1121 aa17.71■□□□□ 0.43
VPS33A-208ENST00000543633 ADGRF5Q8IZF2 1346 aa17.71■□□□□ 0.43
VPS33A-208ENST00000543633 ADGRB1O14514 1584 aa17.71■□□□□ 0.43
VPS33A-208ENST00000543633 CLUAP1Q96AJ1 413 aa17.7■□□□□ 0.42
VPS33A-208ENST00000543633 BCAR3O75815 825 aa17.69■□□□□ 0.42
VPS33A-208ENST00000543633 WWC1Q8IX03 1113 aa17.69■□□□□ 0.42
VPS33A-208ENST00000543633 NSD3Q9BZ95 1437 aa17.69■□□□□ 0.42
VPS33A-208ENST00000543633 PUS7Q96PZ0 661 aaKnown RBP17.69■□□□□ 0.42
VPS33A-208ENST00000543633 PHF23Q9BUL5 403 aaPredicted RBP17.69■□□□□ 0.42
VPS33A-208ENST00000543633 ADGRB2O60241 1585 aa17.68■□□□□ 0.42
VPS33A-208ENST00000543633 RGS3P49796 1198 aa17.68■□□□□ 0.42
VPS33A-208ENST00000543633 NSD2O96028 1365 aa17.68■□□□□ 0.42
VPS33A-208ENST00000543633 REREQ9P2R6 1566 aa17.67■□□□□ 0.42
VPS33A-208ENST00000543633 CCDC27Q2M243 656 aa17.67■□□□□ 0.42
VPS33A-208ENST00000543633 WDR63Q8IWG1 891 aa17.67■□□□□ 0.42
VPS33A-208ENST00000543633 RUNDC1Q96C34 613 aa17.67■□□□□ 0.42
VPS33A-208ENST00000543633 NOS1P29475 1434 aa17.67■□□□□ 0.42
VPS33A-208ENST00000543633 PMFBP1Q8TBY8 1022 aa17.66■□□□□ 0.42
VPS33A-208ENST00000543633 NLRP1Q9C000 1473 aa17.66■□□□□ 0.42
VPS33A-208ENST00000543633 RPGRIP1LQ68CZ1 1315 aa17.65■□□□□ 0.42
VPS33A-208ENST00000543633 IGHDP01880 384 aa17.64■□□□□ 0.41
VPS33A-208ENST00000543633 DMRT2Q9Y5R5 561 aa17.64■□□□□ 0.41
VPS33A-208ENST00000543633 ARHGEF28Q8N1W1 1705 aaKnown RBP17.64■□□□□ 0.41
VPS33A-208ENST00000543633 USP19O94966 1318 aa17.64■□□□□ 0.41
VPS33A-208ENST00000543633 GGT6Q6P531 493 aa17.64■□□□□ 0.41
VPS33A-208ENST00000543633 CANXP27824 592 aaKnown RBP17.63■□□□□ 0.41
VPS33A-208ENST00000543633 ABCC3O15438 1527 aa17.63■□□□□ 0.41
VPS33A-208ENST00000543633 ARHGEF40Q8TER5 1519 aa17.62■□□□□ 0.41
VPS33A-208ENST00000543633 MORC1Q86VD1 984 aa17.62■□□□□ 0.41
VPS33A-208ENST00000543633 IL27Q8NEV9 243 aa17.62■□□□□ 0.41
VPS33A-208ENST00000543633 PIK3C2BO00750 1634 aa17.62■□□□□ 0.41
VPS33A-208ENST00000543633 SIGLEC1Q9BZZ2 1709 aa17.62■□□□□ 0.41
VPS33A-208ENST00000543633 AGLP35573 1532 aa17.62■□□□□ 0.41
VPS33A-208ENST00000543633 RARSP54136 660 aaKnown RBP17.62■□□□□ 0.41
VPS33A-208ENST00000543633 BECN1Q14457 450 aa17.62■□□□□ 0.41
VPS33A-208ENST00000543633 C14orf93Q9H972 538 aaKnown RBP17.62■□□□□ 0.41
VPS33A-208ENST00000543633 SLC4A3P48751 1232 aa17.61■□□□□ 0.41
VPS33A-208ENST00000543633 CFAP53Q96M91 514 aa17.6■□□□□ 0.41
VPS33A-208ENST00000543633 CAMSAP1Q5T5Y3 1602 aa17.6■□□□□ 0.41
VPS33A-208ENST00000543633 NPATQ14207 1427 aa17.6■□□□□ 0.41
VPS33A-208ENST00000543633 CT47B1P0C2W7 299 aaPredicted RBP17.6■□□□□ 0.41
VPS33A-208ENST00000543633 COG6Q9Y2V7 657 aa17.59■□□□□ 0.41
VPS33A-208ENST00000543633 ANKRD36BQ8N2N9 1353 aa17.59■□□□□ 0.41
VPS33A-208ENST00000543633 ANKRD26Q9UPS8 1709 aa17.58■□□□□ 0.41
VPS33A-208ENST00000543633 TRHP20396 242 aaPredicted RBP17.58■□□□□ 0.4
VPS33A-208ENST00000543633 PANK1Q8TE04 598 aa17.58■□□□□ 0.4
VPS33A-208ENST00000543633 FRAT1Q92837 279 aaPredicted RBP17.58■□□□□ 0.4
VPS33A-208ENST00000543633 TCP11L2Q8N4U5 519 aa17.57■□□□□ 0.4
VPS33A-208ENST00000543633 TULP4Q9NRJ4 1543 aa17.57■□□□□ 0.4
VPS33A-208ENST00000543633 MYH16Q9H6N6 1097 aa17.57■□□□□ 0.4
VPS33A-208ENST00000543633 UPF2Q9HAU5 1272 aaKnown RBP17.55■□□□□ 0.4
VPS33A-208ENST00000543633 NEXMIFQ5QGS0 1516 aa17.55■□□□□ 0.4
VPS33A-208ENST00000543633 ARHGAP31Q2M1Z3 1444 aa17.54■□□□□ 0.4
VPS33A-208ENST00000543633 FRAT2O75474 233 aaPredicted RBP17.54■□□□□ 0.4
VPS33A-208ENST00000543633 RWDD1Q9H446 243 aaPredicted RBP17.54■□□□□ 0.4
VPS33A-208ENST00000543633 MED14O60244 1454 aa17.53■□□□□ 0.4
VPS33A-208ENST00000543633 EVC2Q86UK5 1308 aa17.53■□□□□ 0.4
VPS33A-208ENST00000543633 TBC1D32Q96NH3 1257 aa17.52■□□□□ 0.4
VPS33A-208ENST00000543633 CLTCQ00610 1675 aaKnown RBP17.52■□□□□ 0.4
VPS33A-208ENST00000543633 SLC12A5Q9H2X9 1139 aa17.52■□□□□ 0.39
VPS33A-208ENST00000543633 TRAK1Q9UPV9 953 aa17.52■□□□□ 0.39
VPS33A-208ENST00000543633 ZFYVE9O95405 1425 aa17.51■□□□□ 0.39
VPS33A-208ENST00000543633 MTHFSP49914 203 aa17.51■□□□□ 0.39
VPS33A-208ENST00000543633 ABCC11Q96J66 1382 aa17.51■□□□□ 0.39
VPS33A-208ENST00000543633 CFAP65Q6ZU64 1925 aaKnown RBP17.5■□□□□ 0.39
VPS33A-208ENST00000543633 COL3A1P02461 1466 aaPredicted RBP17.5■□□□□ 0.39
VPS33A-208ENST00000543633 MVPQ14764 893 aaKnown RBP17.5■□□□□ 0.39
VPS33A-208ENST00000543633 PPP6R1Q9UPN7 881 aa17.5■□□□□ 0.39
VPS33A-208ENST00000543633 PCDHB15Q9Y5E8 787 aa17.5■□□□□ 0.39
VPS33A-208ENST00000543633 RLBP1P12271 317 aa17.49■□□□□ 0.39
VPS33A-208ENST00000543633 IL16Q14005 1332 aa17.49■□□□□ 0.39
VPS33A-208ENST00000543633 BRPF3Q9ULD4 1205 aa17.48■□□□□ 0.39
VPS33A-208ENST00000543633 PDZRN3Q9UPQ7 1066 aa17.48■□□□□ 0.39
VPS33A-208ENST00000543633 SEC24BO95487 1268 aa17.48■□□□□ 0.39
VPS33A-208ENST00000543633 ZKSCAN2Q63HK3 967 aa17.48■□□□□ 0.39
VPS33A-208ENST00000543633 ANTXR1Q9H6X2 564 aa17.47■□□□□ 0.39
VPS33A-208ENST00000543633 RRP7AQ9Y3A4 280 aaKnown RBP17.47■□□□□ 0.39
VPS33A-208ENST00000543633 CDC42BPGQ6DT37 1551 aa17.46■□□□□ 0.39
VPS33A-208ENST00000543633 VGFO15240 615 aaPredicted RBP17.45■□□□□ 0.38
VPS33A-208ENST00000543633 NEUROD2Q15784 382 aa17.45■□□□□ 0.38
VPS33A-208ENST00000543633 CHGAP10645 457 aaKnown RBP17.45■□□□□ 0.38
VPS33A-208ENST00000543633 HDAC1Q13547 482 aaPredicted RBP17.45■□□□□ 0.38
VPS33A-208ENST00000543633 DZIP1LQ8IYY4 767 aaKnown RBP17.45■□□□□ 0.38
VPS33A-208ENST00000543633 PREX1Q8TCU6 1659 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms