RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 PLEKHG5O94827 1062 aa7.53□□□□□ -1.2
LIMS1-214ENST00000542845 POLA2Q14181 598 aa7.53□□□□□ -1.2
LIMS1-214ENST00000542845 ORAI2Q96SN7 254 aa7.53□□□□□ -1.2
LIMS1-214ENST00000542845 NOS1P29475 1434 aa7.52□□□□□ -1.2
LIMS1-214ENST00000542845 PTPRUQ92729 1446 aa7.52□□□□□ -1.2
LIMS1-214ENST00000542845 ERBINQ96RT1 1412 aa7.52□□□□□ -1.2
LIMS1-214ENST00000542845 BRWD3Q6RI45 1802 aa7.52□□□□□ -1.2
LIMS1-214ENST00000542845 MYOM3Q5VTT5 1437 aa7.52□□□□□ -1.21
LIMS1-214ENST00000542845 ADAMTS13Q76LX8 1427 aa7.52□□□□□ -1.21
LIMS1-214ENST00000542845 A0A0G2JS52 829 aa7.51□□□□□ -1.21
LIMS1-214ENST00000542845 MYT1Q01538 1121 aa7.51□□□□□ -1.21
LIMS1-214ENST00000542845 R3HDM1Q15032 1099 aaKnown RBP7.51□□□□□ -1.21
LIMS1-214ENST00000542845 CCDC9Q9Y3X0 531 aaKnown RBP7.51□□□□□ -1.21
LIMS1-214ENST00000542845 TMEM131LA2VDJ0 1609 aa7.51□□□□□ -1.21
LIMS1-214ENST00000542845 TRPM2O94759 1503 aa7.51□□□□□ -1.21
LIMS1-214ENST00000542845 PIK3R4Q99570 1358 aa7.5□□□□□ -1.21
LIMS1-214ENST00000542845 BAG6P46379 1132 aa7.5□□□□□ -1.21
LIMS1-214ENST00000542845 XPCQ01831 940 aaPredicted RBP7.5□□□□□ -1.21
LIMS1-214ENST00000542845 SEPT12Q8IYM1 358 aa7.5□□□□□ -1.21
LIMS1-214ENST00000542845 PIP4P2Q8N4L2 257 aa7.5□□□□□ -1.21
LIMS1-214ENST00000542845 DCCP43146 1447 aa7.5□□□□□ -1.21
LIMS1-214ENST00000542845 PTCH1Q13635 1447 aa7.5□□□□□ -1.21
LIMS1-214ENST00000542845 BCL9LQ86UU0 1499 aa7.49□□□□□ -1.21
LIMS1-214ENST00000542845 LMTK2Q8IWU2 1503 aa7.49□□□□□ -1.21
LIMS1-214ENST00000542845 EN1Q05925 392 aaPredicted RBP7.49□□□□□ -1.21
LIMS1-214ENST00000542845 ZNF326Q5BKZ1 582 aaKnown RBP7.49□□□□□ -1.21
LIMS1-214ENST00000542845 KANK4Q5T7N3 995 aaPredicted RBP7.49□□□□□ -1.21
LIMS1-214ENST00000542845 EP400Q96L91 3159 aa7.49□□□□□ -1.21
LIMS1-214ENST00000542845 CROCC2H7BZ55 1655 aa7.48□□□□□ -1.21
LIMS1-214ENST00000542845 HAX1O00165 279 aa7.48□□□□□ -1.21
LIMS1-214ENST00000542845 ABCC5O15440 1437 aa7.48□□□□□ -1.21
LIMS1-214ENST00000542845 UNC5CLQ8IV45 518 aa7.48□□□□□ -1.21
LIMS1-214ENST00000542845 AKT1S1Q96B36 256 aa7.48□□□□□ -1.21
LIMS1-214ENST00000542845 MARF1Q9Y4F3 1742 aaKnown RBP7.48□□□□□ -1.21
LIMS1-214ENST00000542845 C1orf167Q5SNV9 1468 aa7.48□□□□□ -1.21
LIMS1-214ENST00000542845 SOS2Q07890 1332 aaPredicted RBP7.48□□□□□ -1.21
LIMS1-214ENST00000542845 ANKRD30AQ9BXX3 1397 aa7.47□□□□□ -1.21
LIMS1-214ENST00000542845 NALCNQ8IZF0 1738 aa7.47□□□□□ -1.21
LIMS1-214ENST00000542845 ADGRL3Q9HAR2 1447 aa7.47□□□□□ -1.21
LIMS1-214ENST00000542845 SENP3-EIF4A1A0A087X0R7 540 aa7.47□□□□□ -1.21
LIMS1-214ENST00000542845 HAP1P54257 671 aaPredicted RBP7.47□□□□□ -1.21
LIMS1-214ENST00000542845 ESCO1Q5FWF5 840 aa7.47□□□□□ -1.21
LIMS1-214ENST00000542845 IFFO2Q5TF58 517 aa7.47□□□□□ -1.21
LIMS1-214ENST00000542845 KRT27Q7Z3Y8 459 aa7.47□□□□□ -1.21
LIMS1-214ENST00000542845 RALGAPBQ86X10 1494 aa7.47□□□□□ -1.21
LIMS1-214ENST00000542845 NUTM2FA1L443 756 aa7.46□□□□□ -1.22
LIMS1-214ENST00000542845 FAM182BQ5T319 152 aa7.46□□□□□ -1.22
LIMS1-214ENST00000542845 UNC13BO14795 1591 aa7.46□□□□□ -1.22
LIMS1-214ENST00000542845 GLI3P10071 1580 aa7.46□□□□□ -1.22
LIMS1-214ENST00000542845 METP08581 1390 aa7.46□□□□□ -1.22
LIMS1-214ENST00000542845 DAPK1P53355 1430 aa7.45□□□□□ -1.22
LIMS1-214ENST00000542845 XRN1Q8IZH2 1706 aaKnown RBP7.45□□□□□ -1.22
LIMS1-214ENST00000542845 FOXO3O43524 673 aa7.45□□□□□ -1.22
LIMS1-214ENST00000542845 PPP1R1BQ9UD71 204 aaPredicted RBP7.45□□□□□ -1.22
LIMS1-214ENST00000542845 PTPN23Q9H3S7 1636 aa7.45□□□□□ -1.22
LIMS1-214ENST00000542845 EZH2Q15910 746 aaKnown RBP7.44□□□□□ -1.22
LIMS1-214ENST00000542845 FBXO3Q9UK99 471 aa7.44□□□□□ -1.22
LIMS1-214ENST00000542845 COL22A1Q8NFW1 1626 aaPredicted RBP7.44□□□□□ -1.22
LIMS1-214ENST00000542845 RPRD2Q5VT52 1461 aaKnown RBP7.43□□□□□ -1.22
LIMS1-214ENST00000542845 REM2Q8IYK8 340 aaPredicted RBP7.43□□□□□ -1.22
LIMS1-214ENST00000542845 MYOM2P54296 1465 aa7.43□□□□□ -1.22
LIMS1-214ENST00000542845 NRXN3Q9Y4C0 1643 aa7.42□□□□□ -1.22
LIMS1-214ENST00000542845 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.42□□□□□ -1.22
LIMS1-214ENST00000542845 FAM50AQ14320 339 aaKnown RBP7.42□□□□□ -1.22
LIMS1-214ENST00000542845 FAM98CQ17RN3 349 aaKnown RBP7.42□□□□□ -1.22
LIMS1-214ENST00000542845 LMOD2Q6P5Q4 547 aa7.42□□□□□ -1.22
LIMS1-214ENST00000542845 CABLES1Q8TDN4 633 aa7.42□□□□□ -1.22
LIMS1-214ENST00000542845 NPHP3Q7Z494 1330 aa7.42□□□□□ -1.22
LIMS1-214ENST00000542845 E9PCH4 1651 aa7.41□□□□□ -1.22
LIMS1-214ENST00000542845 SPHKAPQ2M3C7 1700 aa7.41□□□□□ -1.22
LIMS1-214ENST00000542845 SPDYE4A6NLX3 237 aa7.41□□□□□ -1.22
LIMS1-214ENST00000542845 VPS72Q15906 364 aa7.41□□□□□ -1.22
LIMS1-214ENST00000542845 LAMC1P11047 1609 aa7.41□□□□□ -1.22
LIMS1-214ENST00000542845 ANKRD50Q9ULJ7 1429 aa7.4□□□□□ -1.22
LIMS1-214ENST00000542845 SLIT2O94813 1529 aa7.4□□□□□ -1.22
LIMS1-214ENST00000542845 RGPD1P0DJD0 1748 aa7.4□□□□□ -1.23
LIMS1-214ENST00000542845 ONECUT3O60422 494 aaPredicted RBP7.39□□□□□ -1.23
LIMS1-214ENST00000542845 APBA3O96018 575 aa7.39□□□□□ -1.23
LIMS1-214ENST00000542845 EVX2Q03828 476 aa7.39□□□□□ -1.23
LIMS1-214ENST00000542845 KRT28Q7Z3Y7 464 aa7.39□□□□□ -1.23
LIMS1-214ENST00000542845 ZNF784Q8NCA9 323 aaPredicted RBP7.39□□□□□ -1.23
LIMS1-214ENST00000542845 CAMTA1Q9Y6Y1 1673 aa7.38□□□□□ -1.23
LIMS1-214ENST00000542845 PXDNQ92626 1479 aa7.38□□□□□ -1.23
LIMS1-214ENST00000542845 ROBO2Q9HCK4 1378 aa7.38□□□□□ -1.23
LIMS1-214ENST00000542845 TRIM37O94972 964 aa7.38□□□□□ -1.23
LIMS1-214ENST00000542845 FXR2P51116 673 aaKnown RBP eCLIP7.38□□□□□ -1.23
LIMS1-214ENST00000542845 NBPF8Q3BBV2 869 aa7.38□□□□□ -1.23
LIMS1-214ENST00000542845 NBPF14Q5TI25 921 aa7.38□□□□□ -1.23
LIMS1-214ENST00000542845 SPON1Q9HCB6 807 aa7.38□□□□□ -1.23
LIMS1-214ENST00000542845 PLCH1Q4KWH8 1693 aa7.38□□□□□ -1.23
LIMS1-214ENST00000542845 LRPPRCP42704 1394 aaKnown RBP7.37□□□□□ -1.23
LIMS1-214ENST00000542845 SPATA31A3Q5VYP0 1347 aa7.37□□□□□ -1.23
LIMS1-214ENST00000542845 FAM83GA6ND36 823 aa7.37□□□□□ -1.23
LIMS1-214ENST00000542845 C1QTNF8P60827 252 aa7.37□□□□□ -1.23
LIMS1-214ENST00000542845 CAMKK2Q96RR4 588 aa7.37□□□□□ -1.23
LIMS1-214ENST00000542845 USP32Q8NFA0 1604 aa7.37□□□□□ -1.23
LIMS1-214ENST00000542845 VPS8Q8N3P4 1428 aa7.36□□□□□ -1.23
LIMS1-214ENST00000542845 NUP155O75694 1391 aa7.36□□□□□ -1.23
LIMS1-214ENST00000542845 PITPNM1O00562 1244 aa7.36□□□□□ -1.23
LIMS1-214ENST00000542845 KCNQ2O43526 872 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms